BolC9t59123H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59123H-R
Unique NameBolC9t59123H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length75
Homology
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: CAF1784720.1 (unnamed protein product [Brassica napus] >CDY57902.1 BnaC09g54470D [Brassica napus] >VDD33800.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 134 bits (337), Expect = 2.620e-39
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF
Sbjct:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: KAG2273958.1 (hypothetical protein Bca52824_056513 [Brassica carinata])

HSP 1 Score: 132 bits (333), Expect = 1.070e-38
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVV ALSFVF
Sbjct:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVVALSFVF 74          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: KAF2538717.1 (hypothetical protein F2Q68_00022780 [Brassica cretica] >KAF2574751.1 hypothetical protein F2Q70_00006160 [Brassica cretica] >KAF3500260.1 hypothetical protein F2Q69_00044877 [Brassica cretica] >KAF3565982.1 hypothetical protein DY000_02019018 [Brassica cretica] >RID42111.1 hypothetical protein BRARA_J02024 [Brassica rapa])

HSP 1 Score: 131 bits (330), Expect = 3.070e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATA+V ALSFVF
Sbjct:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATALVGALSFVF 74          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: VDD19625.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 130 bits (326), Expect = 1.250e-37
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MAARSS IRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATA+V ALSFVF
Sbjct:    1 MAARSSFIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATALVGALSFVF 74          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: KAF8106274.1 (hypothetical protein N665_0145s0084 [Sinapis alba])

HSP 1 Score: 125 bits (313), Expect = 1.210e-35
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MAARSSLIRFAFVCIVLAVLVM+AESHNGVNHGPAKSPSSHDP+AHAP+PSAATFSAYPQLIATA+V ALS VF
Sbjct:    1 MAARSSLIRFAFVCIVLAVLVMSAESHNGVNHGPAKSPSSHDPEAHAPSPSAATFSAYPQLIATALVGALSLVF 74          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: CAF2347418.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 121 bits (303), Expect = 3.720e-34
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVV 67
            MAARSS IRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATA+V
Sbjct:    1 MAARSSFIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATALV 67          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: CAE6101038.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 116 bits (290), Expect = 4.120e-32
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHD--PKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MA RSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAK+PS+H+  P AHAP+PSAATFSAYPQLIATA+V A+SFVF
Sbjct:    1 MAPRSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKAPSAHEHGPGAHAPSPSAATFSAYPQLIATALVGAMSFVF 76          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: XP_019084644.1 (PREDICTED: uncharacterized protein LOC109126040 [Camelina sativa])

HSP 1 Score: 114 bits (285), Expect = 2.750e-31
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHD-------PKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MA RSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAK+PS+H        PKAHAP+PSAATFSAYPQL+ATA+V ALSF+F
Sbjct:    1 MAPRSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKAPSAHGHGPAASPPKAHAPSPSAATFSAYPQLMATALVGALSFLF 81          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: XP_024012554.1 (uncharacterized protein LOC18017194 [Eutrema salsugineum])

HSP 1 Score: 105 bits (262), Expect = 8.130e-28
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSS----HDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MAARS LIRFAFVCIVLAVLVMTAESHNG +HGP K+       H P+AHAPAPSAATFSAYPQLIATA+V ALSFVF
Sbjct:    1 MAARSPLIRFAFVCIVLAVLVMTAESHNGHHHGPTKAXXXXXXPHGPEAHAPAPSAATFSAYPQLIATALVGALSFVF 78          
BLAST of BolC9t59123H-R vs. GenBank_protein
Match: XP_020879514.1 (uncharacterized protein LOC110227894 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 105 bits (261), Expect = 3.410e-27
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0
Query:    1 MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAPSAATFSAYPQLIATAVVAALSFVF 74
            MA RSSLIRFAFVCIVLAV+VMTAESHNG +HGPA +P    PKAHAP+PSAATFSAYPQL+ATA+  ALSFVF
Sbjct:   45 MAPRSSLIRFAFVCIVLAVMVMTAESHNGTHHGPAMAPM--PPKAHAPSPSAATFSAYPQLVATALFGALSFVF 116          
The following BLAST results are available for this feature:
BLAST of BolC9t59123H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CAF1784720.12.620e-39100.00unnamed protein product [Brassica napus] >CDY57902... [more]
KAG2273958.11.070e-3898.65hypothetical protein Bca52824_056513 [Brassica car... [more]
KAF2538717.13.070e-3897.30hypothetical protein F2Q68_00022780 [Brassica cret... [more]
VDD19625.11.250e-3795.95unnamed protein product [Brassica rapa][more]
KAF8106274.11.210e-3591.89hypothetical protein N665_0145s0084 [Sinapis alba][more]
CAF2347418.13.720e-3497.01unnamed protein product [Brassica napus][more]
CAE6101038.14.120e-3285.53unnamed protein product [Arabidopsis arenosa][more]
XP_019084644.12.750e-3180.25PREDICTED: uncharacterized protein LOC109126040 [C... [more]
XP_024012554.18.130e-2879.49uncharacterized protein LOC18017194 [Eutrema salsu... [more]
XP_020879514.13.410e-2779.73uncharacterized protein LOC110227894 [Arabidopsis ... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..74
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..35
score: 0.532
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.878
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:57202251..57202475 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59123H-RBolC9t59123H-RBrassica oleracea HDEMmRNAC9 57202251..57202475 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59123H-R-P ID=BolC9t59123H-R-P|Name=BolC9t59123H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=75bp
MAARSSLIRFAFVCIVLAVLVMTAESHNGVNHGPAKSPSSHDPKAHAPAP
SAATFSAYPQLIATAVVAALSFVF.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane