BolC9t59087H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59087H-R
Unique NameBolC9t59087H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length53
Homology
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BLAST of BolC9t59087H-R vs. GenBank_protein
Match: VDD33764.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 108 bits (270), Expect = 9.750e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 
Query:    1 MVSPRATATAVYTQSLGELVPSLHGFRDFILFGVKTGKKKSEKAIRRYWCRR 52
            MVSPRATATAVYTQSLGELVPSLHGFRDFILFGVKTGKKKSEKAIRRYWCRR
Sbjct:    1 MVSPRATATAVYTQSLGELVPSLHGFRDFILFGVKTGKKKSEKAIRRYWCRR 52
[Close]
BLAST of BolC9t59087H-R vs. GenBank_protein
Match: CDY39610.1 (BnaC05g11390D [Brassica napus])

HSP 1 Score: 72.4 bits (176), Expect = 3.640e-13
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0 
Query:    5 RATATAVYTQSLGELVPSLHGFRDFILFGVKTGKK--KSEKAI 45
            RATATAVYTQSLGELVPSLHGFRDFI FGVKTGKK  + +KAI
Sbjct:   35 RATATAVYTQSLGELVPSLHGFRDFISFGVKTGKKIREGDKAI 77
The following BLAST results are available for this feature:
BLAST of BolC9t59087H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 2
Match NameE-valueIdentityDescription
VDD33764.19.750e-30100.00unnamed protein product [Brassica oleracea][more]
CDY39610.13.640e-1386.05BnaC05g11390D [Brassica napus][more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:56946673..56946929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59087H-RBolC9t59087H-RBrassica oleracea HDEMmRNAC9 56946673..56946929 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59087H-R-P ID=BolC9t59087H-R-P|Name=BolC9t59087H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=53bp
MVSPRATATAVYTQSLGELVPSLHGFRDFILFGVKTGKKKSEKAIRRYWC
RR.
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