BolC9t59063H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59063H-R
Unique Name	BolC9t59063H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	116

Homology

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: CAF1791382.1 (unnamed protein product [Brassica napus] >CDY48207.1 BnaCnng15980D [Brassica napus] >VDC91737.1 unnamed protein product [Brassica oleracea] >VDD33740.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 254 bits (648), Expect = 1.790e-85
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW
Sbjct:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: CAF1702611.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 252 bits (643), Expect = 1.040e-84
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0

Query:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQ PLILW
Sbjct:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQAPLILW 115

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: CAF1715467.1 (unnamed protein product [Brassica napus] >CDY21956.1 BnaC09g00620D [Brassica napus] >CDY51309.1 BnaCnng20540D [Brassica napus])

HSP 1 Score: 250 bits (638), Expect = 6.020e-84
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0

Query:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNL HLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW
Sbjct:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLLHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: VDD27873.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 246 bits (628), Expect = 2.020e-82
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0

Query:    1 MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            MGKMK LVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNL HLMRSCNDVFTKPRQGGISPYELHYLVCKQVM HCPTHFYSFIIASSSQTPLILW
Sbjct:    1 MGKMKYLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLLHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMFHCPTHFYSFIIASSSQTPLILW 115

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: VDC95961.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 244 bits (622), Expect = 1.510e-81
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0

Query:    4 MKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            MK LVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLA+ICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW
Sbjct:    1 MKCLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAKICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 112

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: CAF1920837.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 227 bits (579), Expect = 8.130e-75
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0

Query:   12 CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLI W
Sbjct:   21 CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLIFW 124

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: CAF1715606.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 224 bits (572), Expect = 2.170e-73
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0

Query:   12 CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCN PHLMRSCN VFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW
Sbjct:   46 CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNFPHLMRSCNGVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 149

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: CAF1707833.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 210 bits (534), Expect = 1.070e-67
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0

Query:   19 FVYYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            FVYYYFIAGDWIVESYNQSALNICLA+ICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW
Sbjct:   46 FVYYYFIAGDWIVESYNQSALNICLAKICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 142

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BLAST of BolC9t59063H-R vs. GenBank_protein
Match: VDD27971.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 204 bits (519), Expect = 5.320e-66
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0

Query:   21 YYYFIAGDWIVESYNQSALNICLAEICFPIFRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 115
            YYYFIAGDWIVESYN+SALNICLAEICFPIFRVSRDCNLPHLMRSCN VFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW
Sbjct:    6 YYYFIAGDWIVESYNESALNICLAEICFPIFRVSRDCNLPHLMRSCNGVFTKPRQGGISPYELHYLVCKQVMLHCPTHFYSFIIASSSQTPLILW 100

[Close]

BLAST of BolC9t59063H-R vs. GenBank_protein
Match: KAG5394127.1 (hypothetical protein IGI04_024090 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 77.0 bits (188), Expect = 4.520e-16
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0

Query:   12 CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEI 46
            CRVWNYAFVYYYFIAGDWIVESYNQSALNICLA I
Sbjct:   18 CRVWNYAFVYYYFIAGDWIVESYNQSALNICLAGI 52

The following BLAST results are available for this feature:

BLAST of BolC9t59063H-R vs. GenBank_protein

BLAST of BolC9t59063H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 12


Match Name	E-value	Identity	Description
CAF1791382.1	1.790e-85	100.00	unnamed protein product [Brassica napus] >CDY48207...	[more]
CAF1702611.1	1.040e-84	99.13	unnamed protein product [Brassica napus]	[more]
CAF1715467.1	6.020e-84	99.13	unnamed protein product [Brassica napus] >CDY21956...	[more]
VDD27873.1	2.020e-82	97.39	unnamed protein product [Brassica oleracea]	[more]
VDC95961.1	1.510e-81	98.21	unnamed protein product [Brassica oleracea]	[more]
CAF1920837.1	8.130e-75	99.04	unnamed protein product [Brassica napus]	[more]
CAF1715606.1	2.170e-73	98.08	unnamed protein product, partial [Brassica napus]	[more]
CAF1707833.1	1.070e-67	98.97	unnamed protein product, partial [Brassica napus]	[more]
VDD27971.1	5.320e-66	97.89	unnamed protein product [Brassica oleracea]	[more]
KAG5394127.1	4.520e-16	97.14	hypothetical protein IGI04_024090 [Brassica rapa s...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:56787452..56788293 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59063H-R	BolC9t59063H-R	Brassica oleracea HDEM	mRNA	C9 56787452..56788293 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59063H-R-P ID=BolC9t59063H-R-P|Name=BolC9t59063H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=116bp
MGKMKSLVCDHCRVWNYAFVYYYFIAGDWIVESYNQSALNICLAEICFPI
FRVSRDCNLPHLMRSCNDVFTKPRQGGISPYELHYLVCKQVMLHCPTHFY
SFIIASSSQTPLILW.

Orthology

View orthology data for BolC9t59063H-R-P