BolC9t59062H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59062H-R
Unique Name	BolC9t59062H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	206

Homology

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BLAST of BolC9t59062H-R vs. GenBank_protein
Match: VDD33739.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 209 bits (531), Expect = 8.030e-65
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0

Query:    1 MKNPRSLYHRLRRTNPHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQHSRQNVCMRACVTVLLPLQVRTPWHVR 205
            MKNPRSLYHRLRRTNPHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQHSRQNVCMRACVTVLLPLQVRTPWHVR
Sbjct:    1 MKNPRSLYHRLRRTNPHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQHSRQNVCMRACVTVLLPLQVRTPWHVR 205

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BLAST of BolC9t59062H-R vs. GenBank_protein
Match: XP_009121624.1 (gibberellin-regulated protein 14 isoform X1 [Brassica rapa] >XP_013666012.1 gibberellin-regulated protein 14-like [Brassica napus])

HSP 1 Score: 109 bits (272), Expect = 2.450e-25
Identity = 148/164 (90.24%), Postives = 149/164 (90.85%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQH 179
            P PPLVKPPTLPTTPIKPPTTTP  XXXXXXXXXX   VKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT   XXXXXXXXXXXXXXXX XX   XXXXXXXXXXXXXXXXPVRTR+DCV LCGTRCGQH
Sbjct:   39 PSPPLVKPPTLPTTPIKPPTTTPPVXXXXXXXXXXXXXVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTXXXXXXXXXXXXXXXXSXXVNAXXXXXXXXXXXXXXXXPVRTRLDCVPLCGTRCGQH 202

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BLAST of BolC9t59062H-R vs. GenBank_protein
Match: RID42074.1 (hypothetical protein BRARA_J01990 [Brassica rapa])

HSP 1 Score: 109 bits (272), Expect = 4.980e-25
Identity = 148/164 (90.24%), Postives = 149/164 (90.85%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQH 179
            P PPLVKPPTLPTTPIKPPTTTP  XXXXXXXXXX   VKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT   XXXXXXXXXXXXXXXX XX   XXXXXXXXXXXXXXXXPVRTR+DCV LCGTRCGQH
Sbjct:   73 PSPPLVKPPTLPTTPIKPPTTTPPVXXXXXXXXXXXXXVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTXXXXXXXXXXXXXXXXSXXVNAXXXXXXXXXXXXXXXXPVRTRLDCVPLCGTRCGQH 236

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: KAG5376832.1 (hypothetical protein IGI04_041428 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 109 bits (272), Expect = 1.410e-23
Identity = 148/164 (90.24%), Postives = 149/164 (90.85%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQH 179
            P PPLVKPPTLPTTPIKPPTTTP  XXXXXXXXXX   VKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT   XXXXXXXXXXXXXXXX XX   XXXXXXXXXXXXXXXXPVRTR+DCV LCGTRCGQH
Sbjct:   39 PSPPLVKPPTLPTTPIKPPTTTPPVXXXXXXXXXXXXXVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTXXXXXXXXXXXXXXXXSXXVNAXXXXXXXXXXXXXXXXPVRTRLDCVPLCGTRCGQH 202

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: XP_013609513.1 (PREDICTED: gibberellin-regulated protein 14 isoform X2 [Brassica oleracea var. oleracea])

HSP 1 Score: 103 bits (257), Expect = 3.130e-23
Identity = 146/159 (91.82%), Postives = 146/159 (91.82%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGT 174
            P PPLVKPPTLPTTPIKPPTTTP    XXXXXXX KLPVKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VRTRIDCVSLCGT
Sbjct:   28 PSPPLVKPPTLPTTPIKPPTTTPPVKSXXXXXXXTKLPVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTRIDCVSLCGT 186

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: XP_013609512.1 (PREDICTED: gibberellin-regulated protein 14 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 103 bits (257), Expect = 3.960e-23
Identity = 149/159 (93.71%), Postives = 149/159 (93.71%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGT 174
            P PPLVKPPTLPTTPIKPPTTTP  XXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VRTRIDCVSLCGT
Sbjct:   39 PSPPLVKPPTLPTTPIKPPTTTPPVXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTRIDCVSLCGT 197

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: XP_013713986.1 (gibberellin-regulated protein 14-like [Brassica napus])

HSP 1 Score: 97.4 bits (241), Expect = 8.760e-21
Identity = 146/160 (91.25%), Postives = 147/160 (91.88%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTR 175
            P PPLVKPPTLPTTPIKPPTTTP  XXXXXXXXXX   VKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VRTR+DCVSLCGTR
Sbjct:   39 PSPPLVKPPTLPTTPIKPPTTTPPVXXXXXXXXXXXXXVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTRLDCVSLCGTR 198

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: KAF3503640.1 (hypothetical protein F2Q69_00044832 [Brassica cretica])

HSP 1 Score: 94.0 bits (232), Expect = 2.970e-19
Identity = 57/63 (90.48%), Postives = 57/63 (90.48%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPT 78
            P PPLVKPPTLPTTPIKPPTTTP    XXXXXXX KLPVKSYPPQVKPPTSPLVKPPTYKPPT
Sbjct:   28 PSPPLVKPPTLPTTPIKPPTTTPPVKSXXXXXXXTKLPVKSYPPQVKPPTSPLVKPPTYKPPT 90

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: XP_009121625.1 (gibberellin-regulated protein 14 isoform X2 [Brassica rapa])

HSP 1 Score: 92.0 bits (227), Expect = 7.810e-19
Identity = 135/153 (88.24%), Postives = 136/153 (88.89%), Query Frame = 0

Query:   27 PTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTRCGQH 179
            PTTPIKPPTTTP    XXX XXXX   VKSYPPQVKPPTSPLVKPPTYKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT   XXXXXXXXXXXXXXXX XX   XXXXXXXXXXXXXXXXPVRTR+DCV LCGTRCGQH
Sbjct:   39 PTTPIKPPTTTPPVKSXXXPXXXXXXXVKSYPPQVKPPTSPLVKPPTYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTXXXXXXXXXXXXXXXXSXXVNAXXXXXXXXXXXXXXXXPVRTRLDCVPLCGTRCGQH 191

[Close]

BLAST of BolC9t59062H-R vs. GenBank_protein
Match: CDY31392.1 (BnaA07g03270D [Brassica napus])

HSP 1 Score: 92.0 bits (227), Expect = 9.620e-19
Identity = 141/160 (88.12%), Postives = 142/160 (88.75%), Query Frame = 0

Query:   16 PHPPLVKPPTLPTTPIKPPTTTPXXXXXXXXXXXXKLPVKSYPPQVKPPTSPLVKPPTYKPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRTRIDCVSLCGTR 175
            P PPLVKPPTLPTTPIKPPTTTP  XXXXXXXXXX   VKSYPPQVKPPTSPLVKP  YKPPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPT     XXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXX VRTR+DCVSLCGTR
Sbjct:   39 PSPPLVKPPTLPTTPIKPPTTTPPVXXXXXXXXXXXXXVKSYPPQVKPPTSPLVKPXXYKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVKPTPTTPVXXXXXXXXXXXXXXXXXVNAXXXXXXXXXXXXXXXXXVRTRLDCVSLCGTR 198

The following BLAST results are available for this feature:

BLAST of BolC9t59062H-R vs. GenBank_protein

BLAST of BolC9t59062H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 17


Match Name	E-value	Identity	Description
VDD33739.1	8.030e-65	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_009121624.1	2.450e-25	90.24	gibberellin-regulated protein 14 isoform X1 [Brass...	[more]
RID42074.1	4.980e-25	90.24	hypothetical protein BRARA_J01990 [Brassica rapa]	[more]
KAG5376832.1	1.410e-23	90.24	hypothetical protein IGI04_041428 [Brassica rapa s...	[more]
XP_013609513.1	3.130e-23	91.82	PREDICTED: gibberellin-regulated protein 14 isofor...	[more]
XP_013609512.1	3.960e-23	93.71	PREDICTED: gibberellin-regulated protein 14 isofor...	[more]
XP_013713986.1	8.760e-21	91.25	gibberellin-regulated protein 14-like [Brassica na...	[more]
KAF3503640.1	2.970e-19	90.48	hypothetical protein F2Q69_00044832 [Brassica cret...	[more]
XP_009121625.1	7.810e-19	88.24	gibberellin-regulated protein 14 isoform X2 [Brass...	[more]
CDY31392.1	9.620e-19	88.13	BnaA07g03270D [Brassica napus]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005634	nucleus
molecular_function	GO:0052689	carboxylic ester hydrolase activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 31..47 score: 34.12 coord: 17..29 score: 36.92 coord: 67..88 score: 58.18 coord: 52..64 score: 38.46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:56776152..56777031 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59062H-R	BolC9t59062H-R	Brassica oleracea HDEM	mRNA	C9 56776152..56777031 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59062H-R-P ID=BolC9t59062H-R-P|Name=BolC9t59062H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=206bp
MKNPRSLYHRLRRTNPHPPLVKPPTLPTTPIKPPTTTPPVKSPATPVTPT
KLPVKSYPPQVKPPTSPLVKPPTYKPPTPTVKPPTKPPVQPPTYKPPTPL
VKPPSIPPVKPPTAPVKPTPTTPVTTPPPVKPPANPIPSPPVNAPPVKPP
TPPAKPPTPPPVRTRIDCVSLCGTRCGQHSRQNVCMRACVTVLLPLQVRT
PWHVR.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Biological Process**
Term	Definition
GO:0009740	gibberellic acid mediated signaling pathway
GO:0006952	defense response
GO:0006629	lipid metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0052689	carboxylic ester hydrolase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005576	extracellular region

Orthology

View orthology data for BolC9t59062H-R-P