BolC9t59027H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59027H-R
Unique Name	BolC9t59027H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	159

Homology

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: VDD33704.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 287 bits (734), Expect = 3.430e-97
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKIKK 158
            MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKIKK
Sbjct:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKIKK 158

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: XP_013608440.1 (PREDICTED: lysine histidine transporter 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 287 bits (734), Expect = 1.110e-95
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKIKK 158
            MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKIKK
Sbjct:  103 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKIKK 260

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: KAG2300441.1 (hypothetical protein Bca52824_036913 [Brassica carinata])

HSP 1 Score: 247 bits (630), Expect = 1.090e-77
Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRF 153
            MYGSNVES   QITLNLPTDKLSSKVAICTTLVNPIAKF+LMVTPIIDA++SRFSR LPN+KAA LILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLG E +VLIGIIL+GIV+VITGTYQAVKDIF RF
Sbjct:  278 MYGSNVES---QITLNLPTDKLSSKVAICTTLVNPIAKFSLMVTPIIDAIRSRFSRFLPNQKAAGLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGLETLVLIGIILVGIVVVITGTYQAVKDIFGRF 427

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: XP_024012288.1 (amino acid transporter AVT1J isoform X2 [Eutrema salsugineum] >XP_024012289.1 amino acid transporter AVT1J isoform X2 [Eutrema salsugineum])

HSP 1 Score: 241 bits (614), Expect = 2.320e-76
Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKI 156
            MYGSNVES   QITLNLPTDK+SSKVAICTTLVNPIAKFALMVTPIIDAM+SRFSR LP+KK++ L+LST+LV SNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKY RLGFE +VLIGIILIGIV+VITGTYQAVKDIF R   +
Sbjct:  188 MYGSNVES---QITLNLPTDKVSSKVAICTTLVNPIAKFALMVTPIIDAMRSRFSRFLPHKKSSGLVLSTMLVVSNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYGRLGFETMVLIGIILIGIVVVITGTYQAVKDIFGRLRLV 340

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: KAG5376813.1 (hypothetical protein IGI04_041409 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 241 bits (614), Expect = 2.800e-75
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRF 153
            MYGSNVES   QITLNLPT KL SKVAICTTLVNPIAKFALMVTPI+DAM+SRFS  LPNKKAA LILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKY+RLGFE +VLIGII IGIV+VITGTYQAVKDIF RF
Sbjct:  278 MYGSNVES---QITLNLPTGKLISKVAICTTLVNPIAKFALMVTPIMDAMRSRFSWFLPNKKAAGLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYRRLGFETLVLIGIIQIGIVVVITGTYQAVKDIFGRF 427

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: XP_006400041.1 (amino acid transporter AVT1J isoform X1 [Eutrema salsugineum] >ESQ41494.1 hypothetical protein EUTSA_v10013613mg [Eutrema salsugineum])

HSP 1 Score: 241 bits (614), Expect = 3.030e-75
Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRFEKI 156
            MYGSNVES   QITLNLPTDK+SSKVAICTTLVNPIAKFALMVTPIIDAM+SRFSR LP+KK++ L+LST+LV SNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKY RLGFE +VLIGIILIGIV+VITGTYQAVKDIF R   +
Sbjct:  278 MYGSNVES---QITLNLPTDKVSSKVAICTTLVNPIAKFALMVTPIIDAMRSRFSRFLPHKKSSGLVLSTMLVVSNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYGRLGFETMVLIGIILIGIVVVITGTYQAVKDIFGRLRLV 430

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BLAST of BolC9t59027H-R vs. GenBank_protein
Match: NP_001031886.1 (Transmembrane amino acid transporter family protein [Arabidopsis thaliana] >AED92135.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana])

HSP 1 Score: 237 bits (604), Expect = 3.350e-75
Identity = 132/153 (86.27%), Postives = 142/153 (92.81%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRF 153
            MYGS+VES   QITLNLPTDKLSSKVAI TTLVNPIAKFALMVTPIIDAM+SRFSR+LPNK+A+  +LST+LV SNVIVALLLPFFGDLMSLVGAFLSA+ASVILPCLCYLKISGKYQRLGFE +VLIGI L GIV+VITGTYQAVKDIF RF
Sbjct:  164 MYGSDVES---QITLNLPTDKLSSKVAIWTTLVNPIAKFALMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNVIVALLLPFFGDLMSLVGAFLSASASVILPCLCYLKISGKYQRLGFETLVLIGITLTGIVVVITGTYQAVKDIFGRF 313

[Close]

BLAST of BolC9t59027H-R vs. GenBank_protein
Match: NP_001332358.1 (Transmembrane amino acid transporter family protein [Arabidopsis thaliana] >ANM70774.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana] >OAO90574.1 hypothetical protein AXX17_AT5G14740 [Arabidopsis thaliana])

HSP 1 Score: 237 bits (604), Expect = 6.910e-75
Identity = 132/153 (86.27%), Postives = 142/153 (92.81%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRF 153
            MYGS+VES   QITLNLPTDKLSSKVAI TTLVNPIAKFALMVTPIIDAM+SRFSR+LPNK+A+  +LST+LV SNVIVALLLPFFGDLMSLVGAFLSA+ASVILPCLCYLKISGKYQRLGFE +VLIGI L GIV+VITGTYQAVKDIF RF
Sbjct:  188 MYGSDVES---QITLNLPTDKLSSKVAIWTTLVNPIAKFALMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNVIVALLLPFFGDLMSLVGAFLSASASVILPCLCYLKISGKYQRLGFETLVLIGITLTGIVVVITGTYQAVKDIFGRF 337

[Close]

BLAST of BolC9t59027H-R vs. GenBank_protein
Match: NP_197028.1 (Transmembrane amino acid transporter family protein [Arabidopsis thaliana] >Q9LXF8.1 RecName: Full=Amino acid transporter AVT1J; Short=AtAvt1J [Arabidopsis thaliana] >AED92134.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana] >CAA0402726.1 unnamed protein product [Arabidopsis thaliana] >CAB89334.1 putative protein [Arabidopsis thaliana] >CAD5331747.1 unnamed protein product [Arabidopsis thaliana] >VYS66893.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 237 bits (604), Expect = 8.010e-74
Identity = 132/153 (86.27%), Postives = 142/153 (92.81%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRF 153
            MYGS+VES   QITLNLPTDKLSSKVAI TTLVNPIAKFALMVTPIIDAM+SRFSR+LPNK+A+  +LST+LV SNVIVALLLPFFGDLMSLVGAFLSA+ASVILPCLCYLKISGKYQRLGFE +VLIGI L GIV+VITGTYQAVKDIF RF
Sbjct:  274 MYGSDVES---QITLNLPTDKLSSKVAIWTTLVNPIAKFALMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNVIVALLLPFFGDLMSLVGAFLSASASVILPCLCYLKISGKYQRLGFETLVLIGITLTGIVVVITGTYQAVKDIFGRF 423

[Close]

BLAST of BolC9t59027H-R vs. GenBank_protein
Match: CAA7031331.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 236 bits (603), Expect = 1.260e-73
Identity = 131/153 (85.62%), Postives = 141/153 (92.16%), Query Frame = 0

Query:    1 MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAMKSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIFDRF 153
            MYGSN++S   QITL+LPTDK SSKVAICTTLVNPIAKFALMVTPIIDAM+SRFSR LPNK+ + L L T LVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKY+RLGFE +VLIGIILIGIV+VITGTY+AVKDIF RF
Sbjct:  278 MYGSNLDS---QITLSLPTDKFSSKVAICTTLVNPIAKFALMVTPIIDAMRSRFSRFLPNKRTSGLFLGTTLVASNVIVALLLPFFGDLMSLVGAFLSATASVILPCLCYLKISGKYRRLGFETLVLIGIILIGIVVVITGTYKAVKDIFGRF 427

The following BLAST results are available for this feature:

BLAST of BolC9t59027H-R vs. GenBank_protein

BLAST of BolC9t59027H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD33704.1	3.430e-97	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_013608440.1	1.110e-95	100.00	PREDICTED: lysine histidine transporter 2-like [Br...	[more]
KAG2300441.1	1.090e-77	90.20	hypothetical protein Bca52824_036913 [Brassica car...	[more]
XP_024012288.1	2.320e-76	85.90	amino acid transporter AVT1J isoform X2 [Eutrema s...	[more]
KAG5376813.1	2.800e-75	89.54	hypothetical protein IGI04_041409 [Brassica rapa s...	[more]
XP_006400041.1	3.030e-75	85.90	amino acid transporter AVT1J isoform X1 [Eutrema s...	[more]
NP_001031886.1	3.350e-75	86.27	Transmembrane amino acid transporter family protei...	[more]
NP_001332358.1	6.910e-75	86.27	Transmembrane amino acid transporter family protei...	[more]
NP_197028.1	8.010e-74	86.27	Transmembrane amino acid transporter family protei...	[more]
CAA7031331.1	1.260e-73	85.62	unnamed protein product [Microthlaspi erraticum]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005774	vacuolar membrane

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 1..146 e-value: 9.5E-18 score: 64.1
None	No IPR available	PANTHER	PTHR48017:SF105	AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..150
None	No IPR available	PANTHER	PTHR48017	OS05G0424000 PROTEIN-RELATED	coord: 1..150
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..24
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 147..158
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 125..146
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 114..124
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 47..65
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 92..113
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 87..91
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 66..86
None	No IPR available	TMHMM	TMhelix		coord: 63..85
None	No IPR available	TMHMM	TMhelix		coord: 124..146
None	No IPR available	TMHMM	TMhelix		coord: 89..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:56494394..56494870 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59027H-R	BolC9t59027H-R	Brassica oleracea HDEM	mRNA	C9 56494394..56494870 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59027H-R-P ID=BolC9t59027H-R-P|Name=BolC9t59027H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=159bp
MYGSNVESHSTQITLNLPTDKLSSKVAICTTLVNPIAKFALMVTPIIDAM
KSRFSRILPNKKAARLILSTVLVASNVIVALLLPFFGDLMSLVGAFLSAT
ASVILPCLCYLKISGKYQRLGFEMVVLIGIILIGIVLVITGTYQAVKDIF
DRFEKIKK.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

Vocabulary: **Biological Process**
Term	Definition
GO:0006865	amino acid transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005886	plasma membrane
GO:0005774	vacuolar membrane

Orthology

View orthology data for BolC9t59027H-R-P