BolC9t58876H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58876H-R
Unique Name	BolC9t58876H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	182

Homology

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: VDD33553.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 364 bits (934), Expect = 6.210e-127
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query:    1 DQFATYRTWPCSYLSLAYWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLRRETLLLIP 181
            DQFATYRTWPCSYLSLAYWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLRRETLLLIP
Sbjct:    1 DQFATYRTWPCSYLSLAYWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLRRETLLLIP 181

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: CDY68229.1 (BnaUnng02800D [Brassica napus])

HSP 1 Score: 273 bits (697), Expect = 1.520e-90
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPP-RARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLRRE 175
            YWHLWKN+NRLVFE KSCT QEL+LKAL DARNWEEATQ EKRT PP R RP+ SP+L GLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALA+NILSDSKSL NL+NSS  TALLQSVLFDIRVLSC+LDSITFSFV R E
Sbjct:   19 YWHLWKNRNRLVFEGKSCTVQELILKALTDARNWEEATQMEKRTSPPLRVRPALSPMLPGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAINILSDSKSLVNLLNSSTSTALLQSVLFDIRVLSCRLDSITFSFVPRLE 177

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: VDC84836.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 260 bits (664), Expect = 1.420e-81
Identity = 138/174 (79.31%), Postives = 144/174 (82.76%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPP-RARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAV---------------NILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLRRE 175
            YWHLWKN+NRLVFE KSCT QEL+LKAL DARNWEEATQ EKRT PP R RP+ SP+L GLRCYTDGAWDPVSGHSGQGWAFID TGATIRHQSCNRLHVAAPIVAEALAV               NILSDSKSL NL+NSS  TALLQSVLFDIRVLSC+LDSITFSFV R E
Sbjct:  303 YWHLWKNRNRLVFEGKSCTVQELILKALTDARNWEEATQMEKRTSPPLRVRPALSPMLPGLRCYTDGAWDPVSGHSGQGWAFIDSTGATIRHQSCNRLHVAAPIVAEALAVKAALIDAVSNDFSQINILSDSKSLVNLLNSSTSTALLQSVLFDIRVLSCRLDSITFSFVPRLE 476

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: VDD61051.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 233 bits (595), Expect = 1.210e-75
Identity = 122/146 (83.56%), Postives = 128/146 (87.67%), Query Frame = 0

Query:   28 LVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLR 173
            + F+DKSCTEQELVLKALKDARNWEEAT+  K    P       P LTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVA+PIVAEALAVNILSDSKSL NL+NSSA TALLQSVLFDIRVLSC+LDSITFSFV R
Sbjct:    1 IAFKDKSCTEQELVLKALKDARNWEEATRDGKSAALPSQDVLLIPPLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVASPIVAEALAVNILSDSKSLVNLLNSSASTALLQSVLFDIRVLSCRLDSITFSFVPR 146

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: VDD34100.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 196 bits (497), Expect = 3.220e-60
Identity = 103/163 (63.19%), Postives = 120/163 (73.62%), Query Frame = 0

Query:   16 LAYWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRT-----CPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLR 173
            L YWHLWK +N L+FED+ CTE ELVLK LKDAR WEEA+QT K +     C    RPS S    GL C+TDGAWDP SG+SGQGW F DP+   ++H S NR HVAAPIVAEALA+NI SDSKSL NL+NSS+ T LLQSVLFDIR LS + +S++F F  R
Sbjct:   11 LLYWHLWKARNMLIFEDRPCTEAELVLKVLKDARAWEEASQTNKLSVTRLPCQALVRPSPS----GLHCFTDGAWDPNSGNSGQGWVFFDPSVVELKHHSSNRRHVAAPIVAEALALNIFSDSKSLINLLNSSSSTVLLQSVLFDIRALSARFESVSFYFTPR 169

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: CDY71581.1 (BnaCnng73520D [Brassica napus])

HSP 1 Score: 194 bits (494), Expect = 9.870e-59
Identity = 99/159 (62.26%), Postives = 119/159 (74.84%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPL---LTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLR 173
            YWHLWK +N L+FEDKS TE ELVLK LKDARNWEEA +  K  CP    P  + +     GL C+TDGAWDP+SGHSG GW F  P+G  ++H S NR HVAAPIVAEAL +N+ SDSKSL +L+NSS+ T LLQS++FDIRVL C+ +SI+FSFV R
Sbjct:   90 YWHLWKARNMLIFEDKSWTEAELVLKVLKDARNWEEAYRGTK--CPHTHTPRKATVPQSARGLSCFTDGAWDPISGHSGHGWVFSTPSGVELKHHSSNRRHVAAPIVAEALELNVFSDSKSLIHLLNSSSSTVLLQSIMFDIRVLCCRFESISFSFVPR 246

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: KAF2542128.1 (hypothetical protein F2Q68_00031038 [Brassica cretica])

HSP 1 Score: 187 bits (474), Expect = 3.650e-56
Identity = 103/174 (59.20%), Postives = 120/174 (68.97%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLL-TGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVN---------------ILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLRRE 175
            YWHLWKN+NRL+F+DK  TE EL+L+ LKD R WEEA+QTEK       R    PL  TGLRC+TDGAWDP S +SGQGW F D  G  +RH S NRLHVAAPIVAEALAV                +LSDSKSL NL+NSS+ T LL SVLFDIRVLSC+ DSI++  + R +
Sbjct:   40 YWHLWKNRNRLLFKDKYYTESELLLRVLKDVRCWEEASQTEKSGRLTNTRSPPPPLPPTGLRCFTDGAWDPASRNSGQGWVFTDLAGVEVRHHSGNRLHVAAPIVAEALAVKAALLDAVNHDFSQVIVLSDSKSLVNLLNSSSSTVLLHSVLFDIRVLSCRFDSISYFHIPRLQ 213

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: VDD60473.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 184 bits (468), Expect = 8.340e-55
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPL---LTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLR 173
            YWHLWK +N L+FEDKS TE ELVLK LKDARNWEEA +  K  CP    P  + +     GL C+TDGAWDP+ GHSG GW F  P+G  ++H S NR HVAAPIVAEALA+N+ SD KSL +L+NSS+ T LLQS++FDIRVL  + + I+FSFV R
Sbjct:   90 YWHLWKARNILIFEDKSWTEAELVLKVLKDARNWEEAYRGTK--CPHTHTPRKATVPQSARGLSCFTDGAWDPIFGHSGHGWVFSTPSGVELKHHSSNRRHVAAPIVAEALALNVFSDLKSLIHLLNSSSSTVLLQSIMFDIRVLCFRFEFISFSFVPR 246

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: CDY23622.1 (BnaC05g39720D [Brassica napus])

HSP 1 Score: 173 bits (439), Expect = 1.390e-51
Identity = 94/156 (60.26%), Postives = 109/156 (69.87%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLR 173
            YWHLWKN+NRLVFE KSCTE ELV KALKDAR+WEEA+Q++  +  P AR    PL  G                 Q W F+DP+G  + H S NRLHVAAPIVAEALAVN+ SD KSL NL+NSS+ T LLQSVL DIRVLSC+ D I+FS+V R
Sbjct:   19 YWHLWKNRNRLVFEGKSCTETELVTKALKDARSWEEASQSDNTSHSPHARSFPPPLRIG-----------------QVWTFVDPSGVKVHHHSTNRLHVAAPIVAEALAVNVFSDLKSLVNLLNSSSSTVLLQSVLLDIRVLSCRFDYISFSYVPR 157

[Close]

BLAST of BolC9t58876H-R vs. GenBank_protein
Match: VDD46545.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 169 bits (429), Expect = 4.280e-50
Identity = 92/156 (58.97%), Postives = 107/156 (68.59%), Query Frame = 0

Query:   18 YWHLWKNQNRLVFEDKSCTEQELVLKALKDARNWEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFIDPTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQSVLFDIRVLSCKLDSITFSFVLR 173
            YWHLWKN+NRLVFE KSCTE ELV KALKDAR+WEEA+Q++  +  P AR    P   G                   W F+DP+G  + H S NRLHVAAPIVAEALAVN+ SD KSL NL+NSS+ T LLQSVL DIRVLSC+ D I+FS+V R
Sbjct:   19 YWHLWKNRNRLVFEGKSCTETELVTKALKDARSWEEASQSDNTSHSPHARSFPPPPPNG-------------------WTFVDPSGVKVHHHSTNRLHVAAPIVAEALAVNVFSDLKSLVNLLNSSSSTVLLQSVLLDIRVLSCRFDYISFSYVPR 155

The following BLAST results are available for this feature:

BLAST of BolC9t58876H-R vs. GenBank_protein

BLAST of BolC9t58876H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD33553.1	6.210e-127	100.00	unnamed protein product, partial [Brassica olerace...	[more]
CDY68229.1	1.520e-90	86.79	BnaUnng02800D [Brassica napus]	[more]
VDC84836.1	1.420e-81	79.31	unnamed protein product, partial [Brassica rapa]	[more]
VDD61051.1	1.210e-75	83.56	unnamed protein product, partial [Brassica olerace...	[more]
VDD34100.1	3.220e-60	63.19	unnamed protein product [Brassica oleracea]	[more]
CDY71581.1	9.870e-59	62.26	BnaCnng73520D [Brassica napus]	[more]
KAF2542128.1	3.650e-56	59.20	hypothetical protein F2Q68_00031038 [Brassica cret...	[more]
VDD60473.1	8.340e-55	60.38	unnamed protein product [Brassica oleracea]	[more]
CDY23622.1	1.390e-51	60.26	BnaC05g39720D [Brassica napus]	[more]
VDD46545.1	4.280e-50	58.97	unnamed protein product [Brassica oleracea]	[more]

Pages

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47074:SF30	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 15..173
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 15..173
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 79..173 e-value: 1.46119E-8 score: 48.8496
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 70..171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:55608076..55608666 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58876H-R	BolC9t58876H-R	Brassica oleracea HDEM	mRNA	C9 55608076..55608666 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58876H-R-P ID=BolC9t58876H-R-P|Name=BolC9t58876H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=182bp
DQFATYRTWPCSYLSLAYWHLWKNQNRLVFEDKSCTEQELVLKALKDARN
WEEATQTEKRTCPPRARPSHSPLLTGLRCYTDGAWDPVSGHSGQGWAFID
PTGATIRHQSCNRLHVAAPIVAEALAVNILSDSKSLFNLINSSALTALLQ
SVLFDIRVLSCKLDSITFSFVLRRETLLLIP.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR044730	RNase_H-like_dom_plant

Vocabulary: **Biological Process**
Term	Definition
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic

Vocabulary: **Molecular Function**
Term	Definition
GO:0004523	RNA-DNA hybrid ribonuclease activity
GO:0003676	nucleic acid binding

Orthology

View orthology data for BolC9t58876H-R-P