BolC9t58681H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58681H-R
Unique NameBolC9t58681H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length184
Homology
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: VDD33358.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 364 bits (934), Expect = 7.230e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST 183
            MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST 183          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAG2273593.1 (hypothetical protein Bca52824_056148 [Brassica carinata] >VDD33353.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 358 bits (919), Expect = 1.400e-124
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST 183
            MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMF RLENPLRH PSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFPRLENPLRHLPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST 183          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAG2273595.1 (hypothetical protein Bca52824_056150 [Brassica carinata])

HSP 1 Score: 349 bits (896), Expect = 2.110e-118
Identity = 175/180 (97.22%), Postives = 176/180 (97.78%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLT F RLENPLRHPPSIPLQVQLQASASYVCKSGVRG PHLTRVLDLEAC+GLSCLGSPCVSSIITVAGLP PLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTTFPRLENPLRHPPSIPLQVQLQASASYVCKSGVRGVPHLTRVLDLEACRGLSCLGSPCVSSIITVAGLPTPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: CAF2071754.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 337 bits (864), Expect = 7.350e-115
Identity = 171/180 (95.00%), Postives = 172/180 (95.56%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            MSSISCFSGGSRLPFPLGSTAQ RQHRTSAGPVPSGVRSMRLPFLLT F RLENPLRHPP IPLQVQLQASASYVCKSGVRGAPHLTRVLDLEAC+GLSCLGSPCVSSIITVAGLP PLAPLSSSTPPPC LNIASS LGHQSSQFIRFFDRRGTSPFG EMDHFHFAVGLTSPTKLQGP
Sbjct:   70 MSSISCFSGGSRLPFPLGSTAQCRQHRTSAGPVPSGVRSMRLPFLLTTFPRLENPLRHPPPIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACRGLSCLGSPCVSSIITVAGLPTPLAPLSSSTPPPCLLNIASSWLGHQSSQFIRFFDRRGTSPFGLEMDHFHFAVGLTSPTKLQGP 249          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAF2542849.1 (hypothetical protein F2Q68_00029942 [Brassica cretica] >KAF2584538.1 hypothetical protein F2Q70_00034968 [Brassica cretica])

HSP 1 Score: 328 bits (840), Expect = 4.660e-111
Identity = 166/178 (93.26%), Postives = 169/178 (94.94%), Query Frame = 0
Query:    3 SISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            SISCFSGG RLPFPLGSTAQRRQH TSAGPVPSGVRSMRLPFLLT F RLENPLRHPPSIPLQVQLQASAS VCKSGVRGAP+LTRVLDLEAC+GLSCLGSPCVSSIITVAGLP PLAPLSSSTPPPCRLNIASSLLGH SSQFIRFFDRR TSPFG EMDHFHFAVGLTSPT+LQGP
Sbjct:    5 SISCFSGGFRLPFPLGSTAQRRQHHTSAGPVPSGVRSMRLPFLLTTFPRLENPLRHPPSIPLQVQLQASASNVCKSGVRGAPYLTRVLDLEACRGLSCLGSPCVSSIITVAGLPTPLAPLSSSTPPPCRLNIASSLLGHHSSQFIRFFDRRRTSPFGLEMDHFHFAVGLTSPTRLQGP 182          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAF3529476.1 (hypothetical protein DY000_02038053 [Brassica cretica])

HSP 1 Score: 325 bits (834), Expect = 8.600e-110
Identity = 165/178 (92.70%), Postives = 169/178 (94.94%), Query Frame = 0
Query:    3 SISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            SISCFSGG RLPFPLGSTAQRRQH TSAGPVPSGVRSMRLPFLLT F RLENPLR+PPSIPLQVQLQASAS VCKSGVRGAP+LTRVLDLEAC+GLSCLGSPCVSSIITVAGLP PLAPLSSSTPPPCRLNIASSLLGH SSQFIRFFDRR TSPFG EMDHFHFAVGLTSPT+LQGP
Sbjct:    5 SISCFSGGFRLPFPLGSTAQRRQHHTSAGPVPSGVRSMRLPFLLTTFPRLENPLRYPPSIPLQVQLQASASNVCKSGVRGAPYLTRVLDLEACRGLSCLGSPCVSSIITVAGLPTPLAPLSSSTPPPCRLNIASSLLGHHSSQFIRFFDRRRTSPFGLEMDHFHFAVGLTSPTRLQGP 182          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAG2256276.1 (hypothetical protein Bca52824_075570 [Brassica carinata])

HSP 1 Score: 325 bits (832), Expect = 1.220e-108
Identity = 165/180 (91.67%), Postives = 169/180 (93.89%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            MSSISCFSGGSRLPFPLGSTAQRRQH TSAGPVPSGVRSMRLPFLLT F RLENPLRHPPSIPLQ+QLQASASYVCKS VRGAPHLTRVLDLE+C+GLSCLGSP VSSIITVAGLP PLAPLSSSTPPPCRLNI SSLLGHQSSQ IRFFDRR TS FG EMDHFHFAVGLTSPT+LQGP
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRQHHTSAGPVPSGVRSMRLPFLLTTFPRLENPLRHPPSIPLQIQLQASASYVCKSSVRGAPHLTRVLDLESCRGLSCLGSPYVSSIITVAGLPTPLAPLSSSTPPPCRLNITSSLLGHQSSQLIRFFDRRRTSFFGLEMDHFHFAVGLTSPTRLQGP 180          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: CDY08875.1 (BnaC08g11050D [Brassica napus])

HSP 1 Score: 322 bits (825), Expect = 1.410e-107
Identity = 165/180 (91.67%), Postives = 168/180 (93.33%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            MSSISCFSGGSRLPFPLGSTAQRRQH TSAGPVPSGVRSMRLPFLLT F RLEN LRHPPSIP QVQLQASASYVCKSGVRGAPHLTRVLDLE+C+GLSCLGSPCVSSIITVAGLP PLAPLSSSTPPP RLNIASSLLGH SSQ IRFFDRR TS FG EMDHFHFAVGLTSPT+LQGP
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRQHHTSAGPVPSGVRSMRLPFLLTTFPRLENRLRHPPSIPFQVQLQASASYVCKSGVRGAPHLTRVLDLESCRGLSCLGSPCVSSIITVAGLPTPLAPLSSSTPPPYRLNIASSLLGHHSSQLIRFFDRRRTSFFGLEMDHFHFAVGLTSPTRLQGP 180          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAF3570206.1 (hypothetical protein F2Q69_00060224 [Brassica cretica])

HSP 1 Score: 321 bits (823), Expect = 2.490e-107
Identity = 165/180 (91.67%), Postives = 167/180 (92.78%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            MSSISCFSGGSRLPFPLGSTAQRRQH TSAGPVPSGVRSMRL FLLT F RLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEAC+GLSCLGSPCVSSIITVAGLP PLAPLSSSTP    LNIASSLLGH SSQ IRFFDRR TSPFG EMDHFHFAVGLTSPT+LQGP
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRQHHTSAGPVPSGVRSMRLSFLLTTFPRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACRGLSCLGSPCVSSIITVAGLPTPLAPLSSSTPXXXXLNIASSLLGHHSSQLIRFFDRRRTSPFGLEMDHFHFAVGLTSPTRLQGP 180          
BLAST of BolC9t58681H-R vs. GenBank_protein
Match: KAG2253837.1 (hypothetical protein Bca52824_083973 [Brassica carinata])

HSP 1 Score: 316 bits (810), Expect = 3.130e-105
Identity = 164/188 (87.23%), Postives = 167/188 (88.83%), Query Frame = 0
Query:    1 MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFSRLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSCLGSPCVSSIITV--------AGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFFDRRGTSPFGPEMDHFHFAVGLTSPTKLQGP 180
            MSSISCFSGGSRLPFPLGSTAQRR H TSA PVPSGVRSMRL FLLT F  LENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTR+LDLEAC+GLSCLGSPCVSSIITV          LP PLAPLSSSTPPPCRLNIASSLLGH SSQFIRFFDRR TSPFG EMDHFHFAVGLTSPT+LQGP
Sbjct:    1 MSSISCFSGGSRLPFPLGSTAQRRHHHTSASPVPSGVRSMRLHFLLTTFPWLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRILDLEACRGLSCLGSPCVSSIITVNWCVLKRVISLPTPLAPLSSSTPPPCRLNIASSLLGHHSSQFIRFFDRRRTSPFGLEMDHFHFAVGLTSPTRLQGP 188          
The following BLAST results are available for this feature:
BLAST of BolC9t58681H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD33358.17.230e-127100.00unnamed protein product [Brassica oleracea][more]
KAG2273593.11.400e-12498.91hypothetical protein Bca52824_056148 [Brassica car... [more]
KAG2273595.12.110e-11897.22hypothetical protein Bca52824_056150 [Brassica car... [more]
CAF2071754.17.350e-11595.00unnamed protein product, partial [Brassica napus][more]
KAF2542849.14.660e-11193.26hypothetical protein F2Q68_00029942 [Brassica cret... [more]
KAF3529476.18.600e-11092.70hypothetical protein DY000_02038053 [Brassica cret... [more]
KAG2256276.11.220e-10891.67hypothetical protein Bca52824_075570 [Brassica car... [more]
CDY08875.11.410e-10791.67BnaC08g11050D [Brassica napus][more]
KAF3570206.12.490e-10791.67hypothetical protein F2Q69_00060224 [Brassica cret... [more]
KAG2253837.13.130e-10587.23hypothetical protein Bca52824_083973 [Brassica car... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:54239481..54240032 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58681H-RBolC9t58681H-RBrassica oleracea HDEMmRNAC9 54239481..54240032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58681H-R-P ID=BolC9t58681H-R-P|Name=BolC9t58681H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=184bp
MSSISCFSGGSRLPFPLGSTAQRRQHRTSAGPVPSGVRSMRLPFLLTMFS
RLENPLRHPPSIPLQVQLQASASYVCKSGVRGAPHLTRVLDLEACQGLSC
LGSPCVSSIITVAGLPKPLAPLSSSTPPPCRLNIASSLLGHQSSQFIRFF
DRRGTSPFGPEMDHFHFAVGLTSPTKLQGPIST.
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