BolC9t58272H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58272H-R
Unique Name	BolC9t58272H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	145

Homology

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: VDD32949.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 284 bits (726), Expect = 2.140e-96
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF
Sbjct:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: CAF1773870.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 279 bits (713), Expect = 7.550e-94
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNR +SFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF
Sbjct:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRRQSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: CDY21005.1 (BnaA08g25200D [Brassica napus])

HSP 1 Score: 266 bits (681), Expect = 2.120e-89
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQ VCSRMVFL NRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEK+KY+ SLNQPQSRNPNHGCLIESLSIS+LL SLSFF
Sbjct:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQHVCSRMVFLCNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKSKYKTSLNQPQSRNPNHGCLIESLSISKLLPSLSFF 145

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: CDY70172.1 (BnaAnng32810D [Brassica napus])

HSP 1 Score: 253 bits (645), Expect = 5.900e-84
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESE RFRLIGLELLMIDEQ VCSRMVFL N   SFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEK+KY+ SLNQPQSRNPNHGCLIESLSIS+LL SLSFF
Sbjct:    1 MLLNFDDVSAGLSESEFRFRLIGLELLMIDEQHVCSRMVFLCN---SFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKSKYKTSLNQPQSRNPNHGCLIESLSISKLLPSLSFF 142

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: VDD28723.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 249 bits (636), Expect = 1.640e-82
Identity = 133/148 (89.86%), Postives = 136/148 (91.89%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYR---SFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFD+VSAGLSESEV FRLIGLELLMIDE PVCS MVFL N+YR   SFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSAS KESVVQEKAK E SLNQPQSRNPNH CLIESLSIS+LL SLSFF
Sbjct:    1 MLLNFDNVSAGLSESEVCFRLIGLELLMIDEHPVCSHMVFLCNKYRRRHSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASRKESVVQEKAKDETSLNQPQSRNPNHSCLIESLSISKLLPSLSFF 148

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: CAF2256965.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 223 bits (567), Expect = 5.020e-72
Identity = 117/145 (80.69%), Postives = 124/145 (85.52%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESE RFRLIGLELLMIDEQPVCSRM+FL NRY+ F   T      W L+     + SRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQ+KAKY+ SLNQPQSRNPNHGCLIESLSIS+LL SLSFF
Sbjct:    1 MLLNFDDVSAGLSESEFRFRLIGLELLMIDEQPVCSRMIFLCNRYQLFSNETNHKCDKWCLSFCSSTYKSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQDKAKYKASLNQPQSRNPNHGCLIESLSISKLLPSLSFF 145

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: CAF2029817.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 219 bits (559), Expect = 8.300e-71
Identity = 117/145 (80.69%), Postives = 123/145 (84.83%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESE RFRLIGLELLMIDEQ VCSRMVFL NRY+ F   T      W L+     + SRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEK+KY+ SLNQPQSRNPNHGCLIESLSIS+LL SLSFF
Sbjct:    1 MLLNFDDVSAGLSESEFRFRLIGLELLMIDEQHVCSRMVFLCNRYQLFSNETNHKCDKWCLSFCSSTYKSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKSKYKTSLNQPQSRNPNHGCLIESLSISKLLPSLSFF 145

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: CAF1717101.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 185 bits (469), Expect = 1.400e-57
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVV 106
            MLLNFD+VSAGLSESEV FRLIGLELLMIDE PVCS MVFL N+  SFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSAS KE V 
Sbjct:    1 MLLNFDNVSAGLSESEVCFRLIGLELLMIDEHPVCSHMVFLCNKRHSFLTTTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASRKEIVT 106

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BLAST of BolC9t58272H-R vs. GenBank_protein
Match: KAG2269352.1 (hypothetical protein Bca52824_063907 [Brassica carinata])

HSP 1 Score: 154 bits (390), Expect = 7.170e-44
Identity = 109/241 (45.23%), Postives = 117/241 (48.55%), Query Frame = 0

Query:    1 MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPV--------------CSRMVFLYNRYRS--------------------------------------------------------------------FLTTTVRVMAT--------------WVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            MLLNFDDVSAGLSESEV FRLIG+ELLMIDEQ                C  +  L N + +                                                                     L TTV                   W L+     + SRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYE  LNQPQSRNPNHGCLI SL+IS+LL SLSFF
Sbjct:    1 MLLNFDDVSAGLSESEVHFRLIGMELLMIDEQGFISSNWVVRYQGNLNCGTIYRLMNFFATKANTSIYRVVDHNLTIRFTHSSVLSELQDNQLYKVINPQSLNEHAVLDGVDGGWQHSKVQESLAAPAALLVTTVNTKHIGELYSNETNHKCDKWCLSFCSTTYKSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYETFLNQPQSRNPNHGCLIGSLTISKLLPSLSFF 241

[Close]

BLAST of BolC9t58272H-R vs. GenBank_protein
Match: KAF2570103.1 (hypothetical protein F2Q70_00000751 [Brassica cretica])

HSP 1 Score: 148 bits (374), Expect = 4.390e-41
Identity = 79/91 (86.81%), Postives = 79/91 (86.81%), Query Frame = 0

Query:   55 VMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF 145
            VMATWVLTMRCQLHNSRSST GAVNVCNTAIGGTCSTWSLAEPSASSKESVVQ KAK E SLNQPQSRNPNH CLIESLSIS       FF
Sbjct:  187 VMATWVLTMRCQLHNSRSSTLGAVNVCNTAIGGTCSTWSLAEPSASSKESVVQGKAKDETSLNQPQSRNPNHSCLIESLSISNCYLLYLFF 277

The following BLAST results are available for this feature:

BLAST of BolC9t58272H-R vs. GenBank_protein

BLAST of BolC9t58272H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD32949.1	2.140e-96	100.00	unnamed protein product, partial [Brassica olerace...	[more]
CAF1773870.1	7.550e-94	98.62	unnamed protein product [Brassica napus]	[more]
CDY21005.1	2.120e-89	95.17	BnaA08g25200D [Brassica napus]	[more]
CDY70172.1	5.900e-84	92.41	BnaAnng32810D [Brassica napus]	[more]
VDD28723.1	1.640e-82	89.86	unnamed protein product, partial [Brassica olerace...	[more]
CAF2256965.1	5.020e-72	80.69	unnamed protein product [Brassica napus]	[more]
CAF2029817.1	8.300e-71	80.69	unnamed protein product [Brassica napus]	[more]
CAF1717101.1	1.400e-57	89.62	unnamed protein product [Brassica napus]	[more]
KAG2269352.1	7.170e-44	45.23	hypothetical protein Bca52824_063907 [Brassica car...	[more]
KAF2570103.1	4.390e-41	86.81	hypothetical protein F2Q70_00000751 [Brassica cret...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:51114099..51116351 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58272H-R	BolC9t58272H-R	Brassica oleracea HDEM	mRNA	C9 51114099..51116351 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58272H-R-P ID=BolC9t58272H-R-P|Name=BolC9t58272H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=145bp
MLLNFDDVSAGLSESEVRFRLIGLELLMIDEQPVCSRMVFLYNRYRSFLT
TTVRVMATWVLTMRCQLHNSRSSTPGAVNVCNTAIGGTCSTWSLAEPSAS
SKESVVQEKAKYEMSLNQPQSRNPNHGCLIESLSISELLHSLSFF

Orthology

View orthology data for BolC9t58272H-R-P