BolC9t58262H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58262H-R
Unique NameBolC9t58262H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length113
Homology
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: VDD32939.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 210 bits (534), Expect = 3.550e-68
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI
Sbjct:    1 KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CAF2112599.1 (unnamed protein product, partial [Brassica napus] >VDD57680.1 unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 187 bits (476), Expect = 2.660e-59
Identity = 101/112 (90.18%), Postives = 103/112 (91.96%), Query Frame = 0
Query:    1 KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            K+ P AA     VTTAEP KQPNQQGKN+NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHI KFLPSFSGTPHI
Sbjct:    3 KAYPSAAWIPILVTTAEPHKQPNQQGKNVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIFKFLPSFSGTPHI 114          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CDY26950.1 (BnaC09g36330D [Brassica napus])

HSP 1 Score: 168 bits (426), Expect = 7.650e-52
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0
Query:   25 QGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            QGKN+NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI
Sbjct:   15 QGKNVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 102          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CAF2061188.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 163 bits (413), Expect = 1.250e-49
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0
Query:   25 QGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            Q K++NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI
Sbjct:   32 QEKSVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 119          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CAF1773656.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 142 bits (359), Expect = 1.010e-41
Identity = 84/112 (75.00%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            K+ P AA     VTTAEPQKQPNQQGKN+NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK                   FLPSFSGTPHI
Sbjct:    3 KAYPSAAWIPILVTTAEPQKQPNQQGKNVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK-------------------FLPSFSGTPHI 95          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CDY44505.1 (BnaC01g10440D [Brassica napus])

HSP 1 Score: 142 bits (359), Expect = 1.040e-41
Identity = 84/112 (75.00%), Postives = 86/112 (76.79%), Query Frame = 0
Query:    1 KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            K+ P AA     VTTAEPQKQPNQQGKN+NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK                   FLPSFSGTPHI
Sbjct:    4 KAYPSAAWIPILVTTAEPQKQPNQQGKNVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK-------------------FLPSFSGTPHI 96          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CAF2069491.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 141 bits (355), Expect = 4.220e-41
Identity = 83/112 (74.11%), Postives = 85/112 (75.89%), Query Frame = 0
Query:    1 KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            K+ P AA     VTTAEPQKQPNQQGKN+NQQNVNQRRSPDD EREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK                   FLPSFSGTPHI
Sbjct:    4 KAYPSAAWIPILVTTAEPQKQPNQQGKNVNQQNVNQRRSPDDVEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK-------------------FLPSFSGTPHI 96          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: VDD63006.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 5.840e-33
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0
Query:   25 QGKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIV 93
            Q K++NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHV V
Sbjct:   32 QEKSVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVAV 100          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: KAG2258544.1 (hypothetical protein Bca52824_077838 [Brassica carinata])

HSP 1 Score: 107 bits (266), Expect = 5.690e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0
Query:   26 GKNINQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK 82
            GKN+NQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK
Sbjct:   30 GKNVNQQNVNQRRSPDDAEREAREMVLSQILFSHSLERKCLEDVILRAAQMEQIVEK 86          
BLAST of BolC9t58262H-R vs. GenBank_protein
Match: CAF1715535.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-19
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   65 CLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHIIKFLPSFSGTPHI 112
            CLEDV LRAAQMEQIVEKVRIQSPF VIVHH  HIIKF+PSFSG PHI
Sbjct:    3 CLEDVFLRAAQMEQIVEKVRIQSPFQVIVHHSLHIIKFIPSFSGAPHI 50          
The following BLAST results are available for this feature:
BLAST of BolC9t58262H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 14
Match NameE-valueIdentityDescription
VDD32939.13.550e-68100.00unnamed protein product, partial [Brassica olerace... [more]
CAF2112599.12.660e-5990.18unnamed protein product, partial [Brassica napus] ... [more]
CDY26950.17.650e-5298.86BnaC09g36330D [Brassica napus][more]
CAF2061188.11.250e-4996.59unnamed protein product [Brassica napus][more]
CAF1773656.11.010e-4175.00unnamed protein product, partial [Brassica napus][more]
CDY44505.11.040e-4175.00BnaC01g10440D [Brassica napus][more]
CAF2069491.14.220e-4174.11unnamed protein product [Brassica napus][more]
VDD63006.15.840e-3394.20unnamed protein product [Brassica oleracea][more]
KAG2258544.15.690e-2798.25hypothetical protein Bca52824_077838 [Brassica car... [more]
CAF1715535.11.420e-1987.50unnamed protein product, partial [Brassica napus][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:50962769..50970903 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58262H-RBolC9t58262H-RBrassica oleracea HDEMmRNAC9 50962769..50970903 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58262H-R-P ID=BolC9t58262H-R-P|Name=BolC9t58262H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=113bp
KSVPLAAGSRSRVTTAEPQKQPNQQGKNINQQNVNQRRSPDDAEREAREM
VLSQILFSHSLERKCLEDVILRAAQMEQIVEKVRIQSPFHVIVHHFFHII
KFLPSFSGTPHI.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding