BolC9t58233H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58233H-R
Unique NameBolC9t58233H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length73
Homology
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF2594168.1 (hypothetical protein F2Q70_00044306 [Brassica cretica] >CAF1773144.1 unnamed protein product [Brassica napus] >VDD32910.1 unnamed protein product [Brassica oleracea] >KAF2608159.1 hypothetical protein F2Q68_00045264 [Brassica cretica] >KAF3519209.1 hypothetical protein DY000_02062025 [Brassica cretica])

HSP 1 Score: 148 bits (374), Expect = 5.130e-45
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF
Sbjct:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF2539159.1 (hypothetical protein F2Q68_00022198 [Brassica cretica])

HSP 1 Score: 145 bits (365), Expect = 1.210e-43
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            M KVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCL FLSGVRTFIFFTAAIF
Sbjct:    1 MTKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLRFLSGVRTFIFFTAAIF 72          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: VDD51909.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 144 bits (364), Expect = 1.720e-43
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKS SYLIRLGHLDSSPWHPATSLATSHV FVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF
Sbjct:    1 MAKVKSDSYLIRLGHLDSSPWHPATSLATSHVFFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF3519206.1 (hypothetical protein DY000_02062026 [Brassica cretica])

HSP 1 Score: 140 bits (352), Expect = 1.170e-41
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAA IDL+WSN DYLPPLSCLSFLSGVRTFIFFTAAIF
Sbjct:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAALIDLQWSNCDYLPPLSCLSFLSGVRTFIFFTAAIF 72          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF3523569.1 (hypothetical protein F2Q69_00049811 [Brassica cretica])

HSP 1 Score: 136 bits (342), Expect = 3.930e-40
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAA IDL+WSN DYL PLSCLSFLSGVRTFIFFTAAIF
Sbjct:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAALIDLQWSNCDYLLPLSCLSFLSGVRTFIFFTAAIF 72          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF3519207.1 (hypothetical protein DY000_02062027 [Brassica cretica])

HSP 1 Score: 133 bits (334), Expect = 6.920e-39
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRT 63
            MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRT
Sbjct:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRT 63          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF2571551.1 (hypothetical protein F2Q70_00005646 [Brassica cretica] >KAF3567256.1 hypothetical protein DY000_02018173 [Brassica cretica])

HSP 1 Score: 105 bits (261), Expect = 6.380e-28
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYL 49
            MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYL
Sbjct:    1 MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYL 49          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: CAF1857378.1 (unnamed protein product [Brassica napus] >CDY33696.1 BnaC04g29550D [Brassica napus] >VDD10922.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 99.8 bits (247), Expect = 1.260e-25
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWH--PATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKSAS+ + +    S+P H  PATSLATS VIFVAAPIDLRWSNRDYL PLSCL FLSGVR FIF TAAIF
Sbjct:    1 MAKVKSASHTLFVS-ATSTPRHGTPATSLATSPVIFVAAPIDLRWSNRDYLIPLSCLRFLSGVRAFIFLTAAIF 73          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: CAF2069381.1 (unnamed protein product [Brassica napus] >CAF2154169.1 unnamed protein product [Brassica napus])

HSP 1 Score: 97.8 bits (242), Expect = 7.120e-25
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWH-PATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKSAS  + +    S+P H  ATS ATS VIFVAAPIDLRWSNR+YLPPLSCLSFL GVR FIFFTAAIF
Sbjct:    1 MAKVKSASLTLFVS-ATSTPRHGTATSPATSPVIFVAAPIDLRWSNREYLPPLSCLSFLCGVRAFIFFTAAIF 72          
BLAST of BolC9t58233H-R vs. GenBank_protein
Match: KAF3552924.1 (hypothetical protein F2Q69_00015897 [Brassica cretica])

HSP 1 Score: 96.7 bits (239), Expect = 2.100e-24
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0
Query:    1 MAKVKSASYLIRLGHLDSSPWH--PATSLATSHVIFVAAPIDLRWSNRDYLPPLSCLSFLSGVRTFIFFTAAIF 72
            MAKVKSAS+ + +    S+P H  PATSLATS VI VAAPIDLRWSNRDYL PLSCL FLSGVR FIF TAAIF
Sbjct:    1 MAKVKSASHTLFVS-ATSAPRHGTPATSLATSPVISVAAPIDLRWSNRDYLIPLSCLRFLSGVRAFIFLTAAIF 73          
The following BLAST results are available for this feature:
BLAST of BolC9t58233H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 12
Match NameE-valueIdentityDescription
KAF2594168.15.130e-45100.00hypothetical protein F2Q70_00044306 [Brassica cret... [more]
KAF2539159.11.210e-4397.22hypothetical protein F2Q68_00022198 [Brassica cret... [more]
VDD51909.11.720e-4397.22unnamed protein product [Brassica oleracea][more]
KAF3519206.11.170e-4195.83hypothetical protein DY000_02062026 [Brassica cret... [more]
KAF3523569.13.930e-4094.44hypothetical protein F2Q69_00049811 [Brassica cret... [more]
KAF3519207.16.920e-39100.00hypothetical protein DY000_02062027 [Brassica cret... [more]
KAF2571551.16.380e-28100.00hypothetical protein F2Q70_00005646 [Brassica cret... [more]
CAF1857378.11.260e-2575.68unnamed protein product [Brassica napus] >CDY33696... [more]
CAF2069381.17.120e-2575.34unnamed protein product [Brassica napus] >CAF21541... [more]
KAF3552924.12.100e-2474.32hypothetical protein F2Q69_00015897 [Brassica cret... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 72..72
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..47
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:50764410..50764628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58233H-RBolC9t58233H-RBrassica oleracea HDEMmRNAC9 50764410..50764628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58233H-R-P ID=BolC9t58233H-R-P|Name=BolC9t58233H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=73bp
MAKVKSASYLIRLGHLDSSPWHPATSLATSHVIFVAAPIDLRWSNRDYLP
PLSCLSFLSGVRTFIFFTAAIF.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane