BolC9t58220H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58220H-R
Unique Name	BolC9t58220H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	93

Homology

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: VDD32897.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 165 bits (418), Expect = 4.120e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYGNGV 92
            MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYGNGV
Sbjct:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYGNGV 92

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: VDD60211.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 137 bits (346), Expect = 6.420e-39
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSY-GNGV 92
            MAEALAIRSAVMYAAS N+KSLMI SDSL+LVKLLKERGS+PA FGILFDIY FSSSFDVVSFS+VPRLSN LADS+AKSALSLLNS   NGV
Sbjct:   93 MAEALAIRSAVMYAASLNIKSLMILSDSLTLVKLLKERGSLPALFGILFDIYHFSSSFDVVSFSFVPRLSNGLADSVAKSALSLLNSTPSNGV 185

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: RID72173.1 (hypothetical protein BRARA_C04078, partial [Brassica rapa])

HSP 1 Score: 132 bits (333), Expect = 1.560e-37
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLN 86
            MAE LAIRSAVM+AAS N+KSLMI SDS SLVKLLKERGSVPA FGILFDIY FSS FDV+SFSYVPRLSNV+ADS+AKSALSLLN
Sbjct:   47 MAECLAIRSAVMHAASLNIKSLMILSDSQSLVKLLKERGSVPALFGILFDIYHFSSLFDVISFSYVPRLSNVMADSVAKSALSLLN 132

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: RIA04264.1 (hypothetical protein BRARA_K01512 [Brassica rapa])

HSP 1 Score: 132 bits (333), Expect = 1.560e-37
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYG-NGV 92
            MAEALAIRSAVMYAAS N+KSLMI SDS SLVKLLKERGSVPA FGILFDIY FS  FD +SFS+VPRLSNV+ADS+AKSALSLLNS   NGV
Sbjct:   47 MAEALAIRSAVMYAASLNIKSLMILSDSQSLVKLLKERGSVPALFGILFDIYHFSLLFDFISFSFVPRLSNVMADSVAKSALSLLNSSSSNGV 139

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: VDD06305.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 131 bits (329), Expect = 1.590e-37
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYG-NGV 92
            MAEALAIRSAVMYAAS N+KSLMI SDS SLVKLLKERGSVPA FGILFDIY FS  F+ +SFS+VPRLSNV+ADS+AKSALSLLNS   NGV
Sbjct:    1 MAEALAIRSAVMYAASLNIKSLMILSDSQSLVKLLKERGSVPALFGILFDIYHFSLLFEFISFSFVPRLSNVMADSVAKSALSLLNSSSSNGV 93

[Close]

BLAST of BolC9t58220H-R vs. GenBank_protein
Match: KAF3535455.1 (hypothetical protein F2Q69_00024530 [Brassica cretica])

HSP 1 Score: 129 bits (324), Expect = 3.540e-36
Identity = 75/93 (80.65%), Postives = 81/93 (87.10%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLN-SYGNGV 92
            MAE LAIRSAVMYAAS N+KSLMI SDS SLVKLLK+RGSVPA FGILFDIY FSS FDV+ FSYVP LSNV+ADS+AKSALSLLN +  NGV
Sbjct:   46 MAECLAIRSAVMYAASLNIKSLMILSDSQSLVKLLKDRGSVPALFGILFDIYHFSSLFDVIFFSYVPCLSNVMADSVAKSALSLLNLTSSNGV 138

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: CDY50953.1 (BnaA05g36040D [Brassica napus])

HSP 1 Score: 130 bits (326), Expect = 6.710e-36
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLN 86
            MAE LAIRSAVMYAA  N+KSLMI SDS SLVKLLKERGSVPA FGILFDIY FSS FDV+SFSYVPR SNV+ADS+AKSALSLLN
Sbjct:   92 MAECLAIRSAVMYAALLNIKSLMILSDSQSLVKLLKERGSVPALFGILFDIYHFSSLFDVISFSYVPRSSNVMADSVAKSALSLLN 177

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: XP_018487634.1 (PREDICTED: uncharacterized protein LOC108858167 [Raphanus sativus] >XP_018487635.1 PREDICTED: uncharacterized protein LOC108858168 [Raphanus sativus])

HSP 1 Score: 130 bits (326), Expect = 6.710e-36
Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNS 87
            MAEALAIR AVMYAASSNVK LMIRSDSLSLVK+++++GS PA FGI+FD+Y FSSSFDV+SFSYVPRLSNV AD+LAKS L+LLNS
Sbjct:   92 MAEALAIRWAVMYAASSNVKCLMIRSDSLSLVKMMRDKGSTPALFGIVFDVYHFSSSFDVISFSYVPRLSNVEADTLAKSVLTLLNS 178

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BLAST of BolC9t58220H-R vs. GenBank_protein
Match: KAF2596611.1 (hypothetical protein F2Q68_00011656 [Brassica cretica])

HSP 1 Score: 130 bits (327), Expect = 8.500e-36
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLN-SYGNGV 92
            MAE LAIRSAVMYAAS N+KSLMI SDS SLVKLLKERGSVPA FGILFDIY FSS FDV+ FSYVP LSNV+ADS+AKSALSLLN +  NGV
Sbjct:  113 MAECLAIRSAVMYAASLNIKSLMILSDSQSLVKLLKERGSVPALFGILFDIYHFSSLFDVIFFSYVPCLSNVMADSVAKSALSLLNLTSSNGV 205

[Close]

BLAST of BolC9t58220H-R vs. GenBank_protein
Match: VDD16415.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 127 bits (318), Expect = 3.070e-35
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 0

Query:    1 MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFDIYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYGNGV 92
            MAEALAIRSAVMYAASSNVK LMI SDSLSLVKLLK + SVPA FGILFDIY FSS+F+ VSF +VPRLSNV AD++AKSAL+ LNS  NGV
Sbjct:   49 MAEALAIRSAVMYAASSNVKVLMILSDSLSLVKLLKGKSSVPALFGILFDIYHFSSTFESVSFRFVPRLSNVEADTVAKSALTFLNSSVNGV 140

The following BLAST results are available for this feature:

BLAST of BolC9t58220H-R vs. GenBank_protein

BLAST of BolC9t58220H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD32897.1	4.120e-51	100.00	unnamed protein product [Brassica oleracea]	[more]
VDD60211.1	6.420e-39	86.02	unnamed protein product [Brassica oleracea]	[more]
RID72173.1	1.560e-37	86.05	hypothetical protein BRARA_C04078, partial [Brassi...	[more]
RIA04264.1	1.560e-37	82.80	hypothetical protein BRARA_K01512 [Brassica rapa]	[more]
VDD06305.1	1.590e-37	81.72	unnamed protein product [Brassica rapa]	[more]
KAF3535455.1	3.540e-36	80.65	hypothetical protein F2Q69_00024530 [Brassica cret...	[more]
CDY50953.1	6.710e-36	84.88	BnaA05g36040D [Brassica napus]	[more]
XP_018487634.1	6.710e-36	80.46	PREDICTED: uncharacterized protein LOC108858167 [R...	[more]
KAF2596611.1	8.500e-36	81.72	hypothetical protein F2Q68_00011656 [Brassica cret...	[more]
VDD16415.1	3.070e-35	79.35	unnamed protein product, partial [Brassica rapa]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..85 e-value: 1.9E-10 score: 42.8
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 1..81 e-value: 2.6E-11 score: 43.5
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 1..83 score: 9.844358
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR47074:SF30	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..79
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 1..79 e-value: 1.41006E-10 score: 51.546
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:50613894..50614172 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58220H-R	BolC9t58220H-R	Brassica oleracea HDEM	mRNA	C9 50613894..50614172 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58220H-R-P ID=BolC9t58220H-R-P|Name=BolC9t58220H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=93bp
MAEALAIRSAVMYAASSNVKSLMIRSDSLSLVKLLKERGSVPAFFGILFD
IYQFSSSFDVVSFSYVPRLSNVLADSLAKSALSLLNSYGNGV.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR044730	RNase_H-like_dom_plant
IPR002156	RNaseH_domain
IPR036397	RNaseH_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic

Vocabulary: **Molecular Function**
Term	Definition
GO:0004523	RNA-DNA hybrid ribonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolC9t58220H-R-P