BolC9t58163H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58163H-R
Unique NameBolC9t58163H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length51
Homology
BLAST of BolC9t58163H-R vs. GenBank_protein
Match: CAF1700550.1 (unnamed protein product [Brassica napus] >CDY14450.1 BnaC03g21450D [Brassica napus] >VDC89601.1 unnamed protein product [Brassica oleracea] >VDD32840.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 86.3 bits (212), Expect = 6.140e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0
Query:    1 MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50
            MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK
Sbjct:    1 MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50          
BLAST of BolC9t58163H-R vs. GenBank_protein
Match: CAF2142555.1 (unnamed protein product [Brassica napus] >CAF2142561.1 unnamed protein product [Brassica napus])

HSP 1 Score: 84.3 bits (207), Expect = 3.560e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    1 MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50
            MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEA EKAQMMVELEGSKLK
Sbjct:    1 MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEACEKAQMMVELEGSKLK 50          
BLAST of BolC9t58163H-R vs. GenBank_protein
Match: KAF3495475.1 (hypothetical protein DY000_02053049 [Brassica cretica])

HSP 1 Score: 64.3 bits (155), Expect = 3.550e-12
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:   11 RSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50
            RSAEATVLAIPKMEKAKSRATMEA EKAQMMVELEGS+LK
Sbjct:   17 RSAEATVLAIPKMEKAKSRATMEAREKAQMMVELEGSELK 56          
BLAST of BolC9t58163H-R vs. GenBank_protein
Match: KAF3502956.1 (hypothetical protein F2Q69_00039514 [Brassica cretica])

HSP 1 Score: 67.8 bits (164), Expect = 9.090e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:   11 RSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50
            RSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK
Sbjct:  234 RSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 273          
BLAST of BolC9t58163H-R vs. GenBank_protein
Match: KAF2583425.1 (hypothetical protein F2Q68_00001625, partial [Brassica cretica])

HSP 1 Score: 63.5 bits (153), Expect = 2.410e-10
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0
Query:   12 SAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50
            SAEATVLAIPKMEKAKSR TMEASEKAQMMVELEGSKLK
Sbjct:  198 SAEATVLAIPKMEKAKSRDTMEASEKAQMMVELEGSKLK 236          
BLAST of BolC9t58163H-R vs. GenBank_protein
Match: KAG5388519.1 (hypothetical protein IGI04_030060 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 56.2 bits (134), Expect = 5.300e-9
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0
Query:   10 LRSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK 50
            LRSAEA VLA PKMEKAK RATME+S KAQMM ELEGSK K
Sbjct:   13 LRSAEAAVLAFPKMEKAKCRATMESSVKAQMMAELEGSKQK 53          
The following BLAST results are available for this feature:
BLAST of BolC9t58163H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 6
Match NameE-valueIdentityDescription
CAF1700550.16.140e-21100.00unnamed protein product [Brassica napus] >CDY14450... [more]
CAF2142555.13.560e-2098.00unnamed protein product [Brassica napus] >CAF21425... [more]
KAF3495475.13.550e-1295.00hypothetical protein DY000_02053049 [Brassica cret... [more]
KAF3502956.19.090e-12100.00hypothetical protein F2Q69_00039514 [Brassica cret... [more]
KAF2583425.12.410e-1097.44hypothetical protein F2Q68_00001625, partial [Bras... [more]
KAG5388519.15.300e-982.93hypothetical protein IGI04_030060 [Brassica rapa s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:50202789..50203840 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58163H-RBolC9t58163H-RBrassica oleracea HDEMmRNAC9 50202789..50203840 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58163H-R-P ID=BolC9t58163H-R-P|Name=BolC9t58163H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=51bp
MGFTCSSSKLRSAEATVLAIPKMEKAKSRATMEASEKAQMMVELEGSKLK
.
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