BolC9t58065H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58065H-R
Unique Name	BolC9t58065H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	195

Homology

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: VDD32742.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 388 bits (996), Expect = 6.350e-136
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVEIDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPEGPWAMVLIWASAVFLLPISYLGFGG 195
            IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVEIDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPEGPWAMVLIWASAVFLLPISYLGFGG
Sbjct:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVEIDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPEGPWAMVLIWASAVFLLPISYLGFGG 195

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: CDY71314.1 (BnaCnng72340D, partial [Brassica napus])

HSP 1 Score: 340 bits (873), Expect = 4.920e-117
Identity = 177/203 (87.19%), Postives = 182/203 (89.66%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPE-------GPWAMVLIWASAVFLLPISYLGFGG 195
            IHHRRSCRGVGWRLSQFY+RRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVS GSRRACLGFPVVHRRKRSRSTIELSD KTRRRRSPMARRLCRLG+P +  DGGKRRWLCEDG TKLRRATRGGRMNQILTRVLLCLLPARPE       GPWAM+LIW SAVF +     GF G
Sbjct:    1 IHHRRSCRGVGWRLSQFYRRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSSGSRRACLGFPVVHRRKRSRSTIELSDGKTRRRRSPMARRLCRLGVPAKSCDGGKRRWLCEDGATKLRRATRGGRMNQILTRVLLCLLPARPEQARRSVCGPWAMLLIWDSAVFFVAHLIFGFWG 203

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: CAF1911117.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 339 bits (870), Expect = 1.410e-116
Identity = 176/203 (86.70%), Postives = 182/203 (89.66%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPE-------GPWAMVLIWASAVFLLPISYLGFGG 195
            IHHRRSCRGVGWRLSQFY+RRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVS GSRRACLGFPVVHRRKRSR+TIELSD KTRRRRSPMARRLCRLG+P +  DGGKRRWLCEDG TKLRRATRGGRMNQILTRVLLCLLPARPE       GPWAM+LIW SAVF +     GF G
Sbjct:    1 IHHRRSCRGVGWRLSQFYRRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSSGSRRACLGFPVVHRRKRSRTTIELSDGKTRRRRSPMARRLCRLGVPAKSCDGGKRRWLCEDGATKLRRATRGGRMNQILTRVLLCLLPARPEQARRSVCGPWAMLLIWDSAVFFVAHLIFGFWG 203

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: VDC77217.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 333 bits (854), Expect = 4.150e-114
Identity = 176/204 (86.27%), Postives = 182/204 (89.22%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPE-------GPWAMVLIWASAVFL-LPISYLGFGG 195
            IHHRRSCRGVGWRLSQFY+RRSSFREEEAQSAP SPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEV+GGSRRACL FPVVHRRKRSRSTIELSD KTRRRRSPMARRLCRLG+P +  DGGKRRWLCEDG TKLRR TRGGRM+QILTRVLL LL ARPE       GPW M LIWASAVF  +PISYLGF G
Sbjct:    1 IHHRRSCRGVGWRLSQFYRRRSSFREEEAQSAPFSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVNGGSRRACLEFPVVHRRKRSRSTIELSDGKTRRRRSPMARRLCRLGVPAKSCDGGKRRWLCEDGATKLRRVTRGGRMSQILTRVLLRLLSARPEQARCSVCGPWTMFLIWASAVFFFMPISYLGFVG 204

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: VDD15223.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 332 bits (851), Expect = 1.110e-113
Identity = 174/203 (85.71%), Postives = 178/203 (87.68%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPE-------GPWAMVLIWASAVFLLPISYLGFGG 195
            IHHRRSCRGVGWRLSQFYQRRSSFREEEAQS PSSPAFGH GWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSD KTRRRRSPMARRLCRLG+P +  DGGKRRW   DG TKLRRATRGGRMNQILTR+LLCLL ARPE       GPWAMVLIWASAVF +     GF G
Sbjct:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSTPSSPAFGHRGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDGKTRRRRSPMARRLCRLGVPAKSCDGGKRRWKASDGATKLRRATRGGRMNQILTRILLCLLSARPEQARRSVCGPWAMVLIWASAVFFVAHLIFGFWG 203

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: KAF3531128.1 (hypothetical protein DY000_02038172 [Brassica cretica])

HSP 1 Score: 335 bits (859), Expect = 1.570e-113
Identity = 178/210 (84.76%), Postives = 184/210 (87.62%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQR-------LRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGGKRRWLCEDGTTKLRRATRGGRMNQILTRVLLCLLPARPE-------GPWAMVLIWASAVFLLPISYLGFGG 195
            IHHRRS RGVGWRLSQFY+RRSSFREEEAQSAPSSPAFGHGGW+L KLRAAVVESQ        LRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSD KTRRR+SPMARRLCRLG+P +  DGGKRRWLCEDG TKLRRATR GRMNQILTRVLLCLLPARPE       GPWAM LIWAS +FLLPISYLGF G
Sbjct:   26 IHHRRSRRGVGWRLSQFYRRRSSFREEEAQSAPSSPAFGHGGWKLPKLRAAVVESQIGTRRSQWLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDGKTRRRKSPMARRLCRLGVPAKSCDGGKRRWLCEDGATKLRRATRSGRMNQILTRVLLCLLPARPEQARRSVCGPWAMFLIWASVLFLLPISYLGFVG 235

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: CAF2072248.1 (unnamed protein product [Brassica napus] >CDY29292.1 BnaC01g19440D [Brassica napus])

HSP 1 Score: 238 bits (608), Expect = 2.180e-77
Identity = 125/135 (92.59%), Postives = 128/135 (94.81%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGGKRR 134
            IHHRRSCR V WRLSQFY+RRSSFREEEAQSAPSSPAFG GGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSD KTRRRRSPMARRLCRLG+P +  DGGKRR
Sbjct:   14 IHHRRSCRVVRWRLSQFYRRRSSFREEEAQSAPSSPAFGQGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDGKTRRRRSPMARRLCRLGVPAKSCDGGKRR 148

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: CAF2056507.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 201 bits (510), Expect = 1.180e-62
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 0

Query:    1 IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSD 105
            IHHRRSCRGVGWR SQFY+RRSSFREEEAQSAPSS AFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSD
Sbjct:    1 IHHRRSCRGVGWRFSQFYRRRSSFREEEAQSAPSSSAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSD 105

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BLAST of BolC9t58065H-R vs. GenBank_protein
Match: KAF3597562.1 (hypothetical protein DY000_02025464 [Brassica cretica])

HSP 1 Score: 191 bits (484), Expect = 2.710e-57
Identity = 112/182 (61.54%), Postives = 116/182 (63.74%), Query Frame = 0

Query:    9 GVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARR-------------------------------------LCRLGIPVE-IDGGKRRWLCEDGTTKLRRATRGGR 152
            G    LSQFY+RRS+FREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQ                   EVSGGSRRACLGFPVVHRRKRSRSTIELSD KTRRRRSPMARR                                      CRLG+P +  DGGKRRWLCEDG TKLRRATRGGR
Sbjct:   80 GSALELSQFYRRRSNFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQ-------------------EVSGGSRRACLGFPVVHRRKRSRSTIELSDGKTRRRRSPMARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSPMARRFCRLGVPAKSCDGGKRRWLCEDGATKLRRATRGGR 242

[Close]

BLAST of BolC9t58065H-R vs. GenBank_protein
Match: KAF3587258.1 (hypothetical protein F2Q69_00026982 [Brassica cretica])

HSP 1 Score: 182 bits (463), Expect = 9.170e-56
Identity = 100/123 (81.30%), Postives = 104/123 (84.55%), Query Frame = 0

Query:   10 VGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRAAVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRSTIELSDEKTRRRRSPMARRLCRLGIPVE-IDGG 131
             GWRLSQFY+RRSSFREEEAQSAPSSP FGHG  R    +     SQRLRSQEEEDLRRRLRLFEEEVSGGSRRACL FPVVHRRKRSRSTIELSD KTRRRRSPMARRLCRL +P +  DGG
Sbjct:    4 TGWRLSQFYRRRSSFREEEAQSAPSSPVFGHGRLRWVVGQIWTRGSQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLRFPVVHRRKRSRSTIELSDGKTRRRRSPMARRLCRLVVPAKSCDGG 126

The following BLAST results are available for this feature:

BLAST of BolC9t58065H-R vs. GenBank_protein

BLAST of BolC9t58065H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD32742.1	6.350e-136	100.00	unnamed protein product, partial [Brassica olerace...	[more]
CDY71314.1	4.920e-117	87.19	BnaCnng72340D, partial [Brassica napus]	[more]
CAF1911117.1	1.410e-116	86.70	unnamed protein product, partial [Brassica napus]	[more]
VDC77217.1	4.150e-114	86.27	unnamed protein product, partial [Brassica rapa]	[more]
VDD15223.1	1.110e-113	85.71	unnamed protein product, partial [Brassica olerace...	[more]
KAF3531128.1	1.570e-113	84.76	hypothetical protein DY000_02038172 [Brassica cret...	[more]
CAF2072248.1	2.180e-77	92.59	unnamed protein product [Brassica napus] >CDY29292...	[more]
CAF2056507.1	1.180e-62	97.14	unnamed protein product, partial [Brassica napus]	[more]
KAF3597562.1	2.710e-57	61.54	hypothetical protein DY000_02025464 [Brassica cret...	[more]
KAF3587258.1	9.170e-56	81.30	hypothetical protein F2Q69_00026982 [Brassica cret...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 194..195
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 173..193
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..172
None	No IPR available	TMHMM	TMhelix		coord: 171..193

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:49374409..49375073 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58065H-R	BolC9t58065H-R	Brassica oleracea HDEM	mRNA	C9 49374409..49375073 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58065H-R-P ID=BolC9t58065H-R-P|Name=BolC9t58065H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=195bp
IHHRRSCRGVGWRLSQFYQRRSSFREEEAQSAPSSPAFGHGGWRLTKLRA
AVVESQRLRSQEEEDLRRRLRLFEEEVSGGSRRACLGFPVVHRRKRSRST
IELSDEKTRRRRSPMARRLCRLGIPVEIDGGKRRWLCEDGTTKLRRATRG
GRMNQILTRVLLCLLPARPEGPWAMVLIWASAVFLLPISYLGFGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolC9t58065H-R-P