BolC9t58014H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58014H-R
Unique NameBolC9t58014H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length75
Homology
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BLAST of BolC9t58014H-R vs. GenBank_protein
Match: VDD32691.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 147 bits (371), Expect = 1.690e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVDSPEGNTTTRHRTPEPRNISQDQTC 74
            MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVDSPEGNTTTRHRTPEPRNISQDQTC
Sbjct:    1 MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVDSPEGNTTTRHRTPEPRNISQDQTC 74
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BLAST of BolC9t58014H-R vs. GenBank_protein
Match: KAG2274712.1 (hypothetical protein Bca52824_057267 [Brassica carinata])

HSP 1 Score: 140 bits (353), Expect = 3.220e-41
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0 
Query:    1 MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVDSPEGNTTTRHRTPEPRNISQDQT 73
            MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVDSPEGNTTTRHRTPEP NISQDQT
Sbjct:    1 MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVDSPEGNTTTRHRTPEPINISQDQT 73
[Close]
BLAST of BolC9t58014H-R vs. GenBank_protein
Match: CAF2153223.1 (unnamed protein product [Brassica napus] >CDY18103.1 BnaA01g23640D [Brassica napus] >VDC76765.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 61.2 bits (147), Expect = 7.180e-10
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:    1 MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPH 46
            MKQKE VST+PSRADIT N I IY +KMR    RTLK DS HT+ H
Sbjct:    1 MKQKEIVSTDPSRADITTNTIEIYKLKMRFDDARTLKADSFHTTDH 46
The following BLAST results are available for this feature:
BLAST of BolC9t58014H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 3
Match NameE-valueIdentityDescription
VDD32691.11.690e-44100.00unnamed protein product [Brassica oleracea][more]
KAG2274712.13.220e-4198.63hypothetical protein Bca52824_057267 [Brassica car... [more]
CAF2153223.17.180e-1067.39unnamed protein product [Brassica napus] >CDY18103... [more]
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InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:48977638..48977862 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58014H-RBolC9t58014H-RBrassica oleracea HDEMmRNAC9 48977638..48977862 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58014H-R-P ID=BolC9t58014H-R-P|Name=BolC9t58014H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=75bp
MKQKERVSTEPSRADITMNEIGIYTMKMRSGGVRTLKVDSVHTSPHRLVD
SPEGNTTTRHRTPEPRNISQDQTC.
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