BolSC49t61187H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolSC49t61187H-R
Unique Name	BolSC49t61187H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	43

Homology

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BLAST of BolSC49t61187H-R vs. GenBank_protein
Match: VDD65959.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 78.2 bits (191), Expect = 5.880e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query:    1 MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV 42
            MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV
Sbjct:    1 MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV 42

The following BLAST results are available for this feature:

BLAST of BolSC49t61187H-R vs. GenBank_protein

BLAST of BolSC49t61187H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
VDD65959.1	5.880e-18	100.00	unnamed protein product [Brassica oleracea]	[more]

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 26..42
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Boleracea_scaffold_49	contig	Boleracea_scaffold_49:102638..102766 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolSC49t61187H-R	BolSC49t61187H-R	Brassica oleracea HDEM	mRNA	Boleracea_scaffold_49 102638..102766 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolSC49t61187H-R-P ID=BolSC49t61187H-R-P|Name=BolSC49t61187H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=43bp
MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolSC49t61187H-R-P