BolC1t00315H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00315H-R
Unique Name	BolC1t00315H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:1726209..1727974+
coding sequence from alignment at C1:1726209..1727974+

spliced messenger RNA

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1068bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TCTCTCGCCGGAGATTCCCGATCAAATGCTCGTCGTCTGAGCCGGAAGAT
GGTGTGGATTCGGTATCTATTAACAGTTCGACGTACAGCTGGTTCACCGG
ACTCGGCGGTATCGGGATGTTAGACACCGCGTATTTAACCTACCTGAAAC
TGACCGGATCCGATGCCTTTTGCCCCGTTGGTGGTGGTACTTGCGGCGAT
GTCTTGAACAGCGATTACGCCGTTGTTTTTGGTGTTCCTCTGCCAGTGAT
TGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGCTTGCGG
AAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTTGCGTTA
TTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCTGTATAT
ACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAGTGTCTG
TTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGATGTGAAGATG
CAAGAGATACAGCAAGTTGTAGGATTGCAGATATGCTTGGCACTCATAGT
AGTTGCCTCCTTGACTGCTTCATATAGTACTGCTCAACCAATCCCTTCAA
GCTCAGGTGACATTGAACTGCCATATTATTCAACAGAGATCACTACATCA
TCGAGTCCCTATGCTATTGCTCTAGCAAAACATCTAAACTCCGTTGGAGC
TAAAATGTATGGAGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGA
TGTTTGGAAGAGAAGCTGCAAAGCTACTGAATTACGTGGAATGTTTTCCC
GAAGGGTACAAGAAAGGAACTAAGATATACAAGGCATGTTCAGATGTTGG
GATCGAAGGTTTCCCGACATGGATGATAAATGGTCAAGTATTAAGCGGAG
AAGTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAG
GCCAAACCACTTCAGTAA

protein sequence of BolC1t00315H-R

>BolC1t00315H-R-P ID=BolC1t00315H-R-P|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=356bp
MMARFIPVSSCQFRFGLRELPPSSLALNPRRFEVSRRRFPIKCSSSEPED
GVDSVSINSSTYSWFTGLGGIGMLDTAYLTYLKLTGSDAFCPVGGGTCGD
VLNSDYAVVFGVPLPVIGFVMYGLVTALSAQLAEGNLPFGVSKTNGRFAL
FAATTTMASASAYFLYILSTKLSGSSCLYCLVSVFLSFTLFFLALKDVKM
QEIQQVVGLQICLALIVVASLTASYSTAQPIPSSSGDIELPYYSTEITTS
SSPYAIALAKHLNSVGAKMYGAFWCSHCLEQKEMFGREAAKLLNYVECFP
EGYKKGTKIYKACSDVGIEGFPTWMINGQVLSGEVELAELAEMSGFSLDQ
AKPLQ.

mRNA from alignment at C1:1726209..1727974+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1766bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TAAATCTCGTTTCATTTTCGTGTGTGATGGTAGTGTGATTGGTTAATTGA
AGTCAGATGTTCTTAATCAGGTCTCTCGCCGGAGATTCCCGATCAAATGC
TCGTCGTCTGAGCCGGAAGATGGTGTGGATTCGGTATCTATTAACAGTTC
GACGTACAGCTGGTTCACCGGACTCGGCGGTATCGGGATGTTAGACACCG
CGTATTTAACCTACCTGAAACTGACCGGATCCGATGCCTTTTGCCCCGTT
GGTGGTGGTACTTGCGGCGATGTCTTGAACAGCGATTACGCCGTTGTTTT
TGGTAACTATACATCGCTTTAGTGGTGATTAATGTATAGTCCTGAGTCTA
GACTAACCTGGAAACATGTTTGTAGCTTAGTGCAAGATTTGTGTGTGTAG
ATCTGTTGAAGTAGGTATTTTGATTAGATCCTGATTGAATAACTCAAATC
TTGAATCTGTGCTATGAGCTGTGTCAATGAATATCATGCTCCATGTTGAA
AGCTGAACTCAGTGACTGTTCTTTTGCATTTTCCCAGGTGTTCCTCTGCC
AGTGATTGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGC
TTGCGGAAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTT
GCGTTATTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCT
GTATATACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAG
TGTCTGTTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGTATCC
CTTTATATCCATTTCTCTTACATTTTGGGTAAGTTGTCAAGATGAGTTCT
TAAGTTAGGTGCATGTGGTAGGATGTGAAGATGCAAGAGATACAGCAAGT
TGTAGGATTGCAGATATGCTTGGCACTCATAGTAGTTGCCTCCTTGACTG
CTTCATATAGTACTGCTCAACCAATCCCTTCAAGGTAATCTTGGTTCTTT
GGAGTCCGATGGCATGTTTTAATCCTTTCTGACAAGTAATGAAAAATAGC
TGTCCGAGGATGAATGAGTCAAATGAAGTGGTTTATCTTAACCCCAATAT
ACGTCTTTTGTTTTCACTCCTTGCAGCTCAGGTGACATTGAACTGCCATA
TTATTCAACAGAGATCACTACATCATCGAGTCCCTATGCTATTGCTCTAG
CAAAACATCTAAACTCCGTTGGAGCTAAAATGTATGGAGCATTCTGGTGT
TCTCACTGCTTAGAGCAAAAAGAGGTAGGTACTACTAGGTATTTAATTCA
TTATTGGTTTACGAGTAATCAGTTTCACGGATTTATCTTGTAACTATGTA
AGTTTTCCTCTATCTATAGATGTTTGGAAGAGAAGCTGCAAAGCTACTGA
ATTACGTGGAATGTTTTCCCGAAGGGTACAAGAAAGGAACTAAGATATAC
AAGGCATGTTCAGATGTTGGGATCGAAGGTTTCCCGACATGGATGATAAA
TGGTCAAGTGAGTGTAAATCCTCTGAATCCTTGGCACAAATTTTCATCAT
ATGTCAGTTACTATTTCACCTCTTTTATTGTTTAGGTATTAAGCGGAGAA
GTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAGGC
CAAACCACTTCAGTAA

Coding sequence (CDS) from alignment at C1:1726209..1727974+

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=CDS|length=1068bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TCTCTCGCCGGAGATTCCCGATCAAATGCTCGTCGTCTGAGCCGGAAGAT
GGTGTGGATTCGGTATCTATTAACAGTTCGACGTACAGCTGGTTCACCGG
ACTCGGCGGTATCGGGATGTTAGACACCGCGTATTTAACCTACCTGAAAC
TGACCGGATCCGATGCCTTTTGCCCCGTTGGTGGTGGTACTTGCGGCGAT
GTCTTGAACAGCGATTACGCCGTTGTTTTTGGTGTTCCTCTGCCAGTGAT
TGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGCTTGCGG
AAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTTGCGTTA
TTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCTGTATAT
ACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAGTGTCTG
TTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGATGTGAAGATG
CAAGAGATACAGCAAGTTGTAGGATTGCAGATATGCTTGGCACTCATAGT
AGTTGCCTCCTTGACTGCTTCATATAGTACTGCTCAACCAATCCCTTCAA
GCTCAGGTGACATTGAACTGCCATATTATTCAACAGAGATCACTACATCA
TCGAGTCCCTATGCTATTGCTCTAGCAAAACATCTAAACTCCGTTGGAGC
TAAAATGTATGGAGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGA
TGTTTGGAAGAGAAGCTGCAAAGCTACTGAATTACGTGGAATGTTTTCCC
GAAGGGTACAAGAAAGGAACTAAGATATACAAGGCATGTTCAGATGTTGG
GATCGAAGGTTTCCCGACATGGATGATAAATGGTCAAGTATTAAGCGGAG
AAGTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAG
GCCAAACCACTTCAGTAA