BnaA01T0067800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0067800WE
Unique NameBnaA01T0067800WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:4601835..4602976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0067800WEBnaA01G0067800WEBrassica napus Westargenewestarv0_A01 4601835..4602976 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0067800WE.utr5p1BnaA01T0067800WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 4601835..4601887 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0067800WE.exon1BnaA01T0067800WE.exon1Brassica napus Westarexonwestarv0_A01 4601835..4602282 +
BnaA01T0067800WE.exon2BnaA01T0067800WE.exon2Brassica napus Westarexonwestarv0_A01 4602569..4602976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0067800WEcds.BnaA01T0067800WEBrassica napus WestarCDSwestarv0_A01 4601888..4602282 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0067800WE.utr3p1BnaA01T0067800WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 4602738..4602976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0067800WEBnaA01T0067800WE-PBrassica napus Westarpolypeptidewestarv0_A01 4601888..4602737 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0067800WE ID=BnaA01T0067800WE|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=mRNA|length=856bp|location=Sequence derived from alignment at westarv0_A01:4601835..4602976+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
AAATACATACACATCCTTTTCTCTTCGATCTCTCTCAATTCACAAGAAGC
AAAATGACGGATACAGCTAGAACCCATCACGATATCACAAGTCGAGATCA
GTATCCCCGAGACCGAGACCAGTATTCTATGATCGGTCGAGACCGAGACA
AGTATTCCATGATTGGCCGAGACCGAGACCAGTACAACATGTATGGTCGA
GACTACTCCAAGTCTAGACAGATTGCTAAGGCTGTTACCGCAGTCACGGC
CGGTGGGTCCCTTCTTGTCCTCTCCAGTCTCACCCTTGTCGGAACTGTCA
TTGCTCTGACTGTTGCGACTCCTCTGCTTGTTATCTTTAGTCCAATCCTT
GTCCCTGCTCTCATCACCGTTGCATTGCTCATCACCGGCTTTCTCTCCTC
TGGTGGCTTTGGCATTGCAGCTATAACCGTCTTCTCTTGGATCTACAAGT
ATGCAACGGGAGAGCACCCACAAGGGTCAGATAAACTGGACAGTGCAAGG
ATGAAGCTGGGAGGCAAAGTTCAGGATATGAAGGACAGAGCTCAGTACTA
TGGACAACAGCAAACAGGTGGGGAACACGACCGTGACCGTACCCGTGGAA
CCCAGCACACTACCTAAATTACGCCATGACTATTTTCATAGTCCAATAAG
GCTGATGTCGGGAGTCCAGTTTATGAGCAATAAGGTGTTTAGAATTTGAT
CAATGTTTATAATAAAAGGGGGAAGATGATATCACAGTCTTTTTTTCTTT
TTGGCTTTTGTTAAATTTGTGTGTTTCTATTTGTAAACCTTCTGTATATG
TTGTACTTCTTTCCCTTTTTAAGTGGTATCGTCTATATGGTAAAACGTTA
TGTTTG
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protein sequence of BnaA01T0067800WE

>BnaA01T0067800WE-P ID=BnaA01T0067800WE-P|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=polypeptide|length=188bp
MTDTARTHHDITSRDQYPRDRDQYSMIGRDRDKYSMIGRDRDQYNMYGRD
YSKSRQIAKAVTAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILV
PALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARM
KLGGKVQDMKDRAQYYGQQQTGGEHDRDRTRGTQHTT.
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mRNA from alignment at westarv0_A01:4601835..4602976+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0067800WE ID=BnaA01T0067800WE|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=mRNA|length=1142bp|location=Sequence derived from alignment at westarv0_A01:4601835..4602976+ (Brassica napus Westar)
AAATACATACACATCCTTTTCTCTTCGATCTCTCTCAATTCACAAGAAGC
AAAATGACGGATACAGCTAGAACCCATCACGATATCACAAGTCGAGATCA
GTATCCCCGAGACCGAGACCAGTATTCTATGATCGGTCGAGACCGAGACA
AGTATTCCATGATTGGCCGAGACCGAGACCAGTACAACATGTATGGTCGA
GACTACTCCAAGTCTAGACAGATTGCTAAGGCTGTTACCGCAGTCACGGC
CGGTGGGTCCCTTCTTGTCCTCTCCAGTCTCACCCTTGTCGGAACTGTCA
TTGCTCTGACTGTTGCGACTCCTCTGCTTGTTATCTTTAGTCCAATCCTT
GTCCCTGCTCTCATCACCGTTGCATTGCTCATCACCGGCTTTCTCTCCTC
TGGTGGCTTTGGCATTGCAGCTATAACCGTCTTCTCTTGGATCTACAAGT
AAGTGGACATTTAAACATATATTTCAAGTTGTACAATATGTTTTAAGAAG
CGGTAATTTATTAAATAAAACATAATGGTTGAATATAGCGACATGCCTTG
TGAGGGGAAAAAAAGTACAAACCATAAAATTATACATAACCGACAAGTGG
ATTTTTAGATATTACATTAAAATGCCGTTTTACATCATCATTTTGGCTAG
CTATACACAAGACTTGACTTAGCTAGCTTGATACGTACGTGTAGTATATG
ATGCATGCACGTGTGTGTGAATTGTGATGAATAGGTATGCAACGGGAGAG
CACCCACAAGGGTCAGATAAACTGGACAGTGCAAGGATGAAGCTGGGAGG
CAAAGTTCAGGATATGAAGGACAGAGCTCAGTACTATGGACAACAGCAAA
CAGGTGGGGAACACGACCGTGACCGTACCCGTGGAACCCAGCACACTACC
TAAATTACGCCATGACTATTTTCATAGTCCAATAAGGCTGATGTCGGGAG
TCCAGTTTATGAGCAATAAGGTGTTTAGAATTTGATCAATGTTTATAATA
AAAGGGGGAAGATGATATCACAGTCTTTTTTTCTTTTTGGCTTTTGTTAA
ATTTGTGTGTTTCTATTTGTAAACCTTCTGTATATGTTGTACTTCTTTCC
CTTTTTAAGTGGTATCGTCTATATGGTAAAACGTTATGTTTG
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Coding sequence (CDS) from alignment at westarv0_A01:4601835..4602976+

>BnaA01T0067800WE ID=BnaA01T0067800WE|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=CDS|length=564bp|location=Sequence derived from alignment at westarv0_A01:4601835..4602976+ (Brassica napus Westar)
ATGACGGATACAGCTAGAACCCATCACGATATCACAAGTCGAGATCAGTA
TCCCCGAGACCGAGACCAGTATTCTATGATCGGTCGAGACCGAGACAAGT
ATTCCATGATTGGCCGAGACCGAGACCAGTACAACATGTATGGTCGAGAC
TACTCCAAGTCTAGACAGATTGCTAAGGCTGTTACCGCAGTCACGGCCGG
TGGGTCCCTTCTTGTCCTCTCCAGTCTCACCCTTGTCGGAACTGTCATTG
CTCTGACTGTTGCGACTCCTCTGCTTGTTATCTTTAGTCCAATCCTTGTC
CCTGCTCTCATCACCGTTGCATTGCTCATCACCGGCTTTCTCTCCTCTGG
TGGCTTTGGCATTGCAGCTATAACCGTCTTCTCTTGGATCTACAAGTATG
CAACGGGAGAGCACCCACAAGGGTCAGATAAACTGGACAGTGCAAGGATG
AAGCTGGGAGGCAAAGTTCAGGATATGAAGGACAGAGCTCAGTACTATGG
ACAACAGCAAACAGGTGGGGAACACGACCGTGACCGTACCCGTGGAACCC
AGCACACTACCTAA
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