BnaA01T0065900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0065900WE
Unique NameBnaA01T0065900WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:4524363..4524789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0065900WEBnaA01G0065900WEBrassica napus Westargenewestarv0_A01 4524363..4524789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0065900WEBnaA01T0065900WE-PBrassica napus Westarpolypeptidewestarv0_A01 4524363..4524789 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0065900WE.exon2BnaA01T0065900WE.exon2Brassica napus Westarexonwestarv0_A01 4524363..4524478 -
BnaA01T0065900WE.exon1BnaA01T0065900WE.exon1Brassica napus Westarexonwestarv0_A01 4524696..4524789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0065900WEcds.BnaA01T0065900WEBrassica napus WestarCDSwestarv0_A01 4524696..4524789 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0065900WE ID=BnaA01T0065900WE|Name=BnaA01T0065900WE|organism=Brassica napus Westar|type=mRNA|length=210bp|location=Sequence derived from alignment at westarv0_A01:4524363..4524789- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCCATCGATTCAGTCGTCGATCCTCTAAGAGACTTTGCGAAGGA
CAGCATTCGTCTCGTTAAACGTTGTCACAAACCAGATCGCAAAGAATTCA
CGAAAGTGGCGGTCCGTACAGCTATTGGGTTTGTGGTGATGGGATTCGTG
GGATTCTTTGTGAAGCTCATCTTTATTCCCATCAACAACATCATCGTCGG
TGCTACCTAA
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protein sequence of BnaA01T0065900WE

>BnaA01T0065900WE-P ID=BnaA01T0065900WE-P|Name=BnaA01T0065900WE|organism=Brassica napus Westar|type=polypeptide|length=70bp
MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFV
GFFVKLIFIPINNIIVGAT.
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mRNA from alignment at westarv0_A01:4524363..4524789-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0065900WE ID=BnaA01T0065900WE|Name=BnaA01T0065900WE|organism=Brassica napus Westar|type=mRNA|length=427bp|location=Sequence derived from alignment at westarv0_A01:4524363..4524789- (Brassica napus Westar)
ATGGATGCCATCGATTCAGTCGTCGATCCTCTAAGAGACTTTGCGAAGGA
CAGCATTCGTCTCGTTAAACGTTGTCACAAACCAGATCGCAAAGGTAATT
GAACGAGCTCGGTCTTTCCGTGTCTTTTAGATAGTTATGCATGAGCGATC
TCTGTGTGTTTTAATCATCTGATGTAGTGGATCTATCGTTATTTTATTGC
GGATTGGAAGATCTGTATGTTGAATGGAGAGAGAGAGAGAGAGATCCGTG
TTGTTGTTGTCCGTTATGGAGAAGATTAGTCTGATTCTGTGTGTTTCTTT
TTGGTTGTAAGAATTCACGAAAGTGGCGGTCCGTACAGCTATTGGGTTTG
TGGTGATGGGATTCGTGGGATTCTTTGTGAAGCTCATCTTTATTCCCATC
AACAACATCATCGTCGGTGCTACCTAA
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Coding sequence (CDS) from alignment at westarv0_A01:4524363..4524789-

>BnaA01T0065900WE ID=BnaA01T0065900WE|Name=BnaA01T0065900WE|organism=Brassica napus Westar|type=CDS|length=210bp|location=Sequence derived from alignment at westarv0_A01:4524363..4524789- (Brassica napus Westar)
ATGGATGCCATCGATTCAGTCGTCGATCCTCTAAGAGACTTTGCGAAGGA
CAGCATTCGTCTCGTTAAACGTTGTCACAAACCAGATCGCAAAGAATTCA
CGAAAGTGGCGGTCCGTACAGCTATTGGGTTTGTGGTGATGGGATTCGTG
GGATTCTTTGTGAAGCTCATCTTTATTCCCATCAACAACATCATCGTCGG
TGCTACCTAA
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