BnaA01T0038500WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0038500WE
Unique NameBnaA01T0038500WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:2417240..2419984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0038500WEBnaA01G0038500WEBrassica napus Westargenewestarv0_A01 2417240..2419984 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0038500WE.utr5p1BnaA01T0038500WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 2417240..2417420 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0038500WE.exon1BnaA01T0038500WE.exon1Brassica napus Westarexonwestarv0_A01 2417240..2417579 +
BnaA01T0038500WE.exon2BnaA01T0038500WE.exon2Brassica napus Westarexonwestarv0_A01 2417906..2417996 +
BnaA01T0038500WE.exon3BnaA01T0038500WE.exon3Brassica napus Westarexonwestarv0_A01 2418092..2418144 +
BnaA01T0038500WE.exon4BnaA01T0038500WE.exon4Brassica napus Westarexonwestarv0_A01 2418335..2418427 +
BnaA01T0038500WE.exon5BnaA01T0038500WE.exon5Brassica napus Westarexonwestarv0_A01 2418533..2418604 +
BnaA01T0038500WE.exon6BnaA01T0038500WE.exon6Brassica napus Westarexonwestarv0_A01 2418771..2418843 +
BnaA01T0038500WE.exon7BnaA01T0038500WE.exon7Brassica napus Westarexonwestarv0_A01 2418962..2419007 +
BnaA01T0038500WE.exon8BnaA01T0038500WE.exon8Brassica napus Westarexonwestarv0_A01 2419115..2419178 +
BnaA01T0038500WE.exon9BnaA01T0038500WE.exon9Brassica napus Westarexonwestarv0_A01 2419301..2419354 +
BnaA01T0038500WE.exon10BnaA01T0038500WE.exon10Brassica napus Westarexonwestarv0_A01 2419438..2419515 +
BnaA01T0038500WE.exon11BnaA01T0038500WE.exon11Brassica napus Westarexonwestarv0_A01 2419617..2419984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0038500WEcds.BnaA01T0038500WEBrassica napus WestarCDSwestarv0_A01 2417421..2417579 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0038500WE.utr3p1BnaA01T0038500WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 2419710..2419984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0038500WEBnaA01T0038500WE-PBrassica napus Westarpolypeptidewestarv0_A01 2417421..2419709 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0038500WE ID=BnaA01T0038500WE|Name=BnaA01T0038500WE|organism=Brassica napus Westar|type=mRNA|length=1332bp|location=Sequence derived from alignment at westarv0_A01:2417240..2419984+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
AAACAACTCACCCCTCTTTTCCTCGCCTCTCTCTCTCCGATTCTCAAGAG
CTGATTAGGGTTTCTCGATTTCAATCGAAAAATCGTACCTTTCTCTCGAT
TTCAGCGGATTGTCGAATCCGAAGTGTGCAATCAATCCATCCTCACCCTG
AAAAGCTAGCAGAGAAAGGAGGAGGAGGATAATGAGGGATTCGAGCGTGA
TGATGCCTGTGGAGATGGCGCGAATCTTCGCGACGGGGATGAAGAATTGG
TGGGAGGAGGTTAACGAGTCAACTCAGTGGCAAGATGGGATCTTCTTCTC
TCTCTGTGGAGCTTATGCTCTTGTCTCAGCCATCGCTCTTGTTCAATTGG
TGAGGATCCAAATGAGAGTGCCTGAATATGGCTGGACCACTCAGAAGGTG
TTTCATCTTATGAACTTTGTCGTCAATGGAGTTCGTGCGGTTCTATTTGG
ATTTCACCATCAAGTCTTTCTCGTGCATCCCAAGGCTCTTTGCTGGATAT
TATTGGATCTTCCGGGCCTCCTCTTTTTCTCGGCATACACACTGCTCGTT
CTGTTCTGGGCAGAAATATATCACCAGGCGAGAAGCTTACCAACTGATAA
GCTGCGGATAACCTATATCTCAGTCAATGTGGCTGTCTATTTGGCTCAGG
TTGTAATCTGGGTATGCATCTGGGTAAATGATAACAGCACGGTGGAGTTA
GTTGGAAAGATATTTATGGCAGTTGTGTCTTTCATCGCTGCGTTAGGCTT
CTTGCTTTACGGAGGAAGATTGTTTATTATGCTAAGAAGGTTCCCCATTG
AGTCAAAAGGGAGAAGGAAGAAGCTCCATGAGGTTGGATCTGTGACAGCC
ATATGCTTCACTTGCTTCCTCATAAGATGCATTGTGGTGGGTGTGTCAGC
ATTTGACAGGGATTTAACGCTGGATGTTCTTGATCACCCAGTTCTGAACT
TAATCTACTATATGGTGGTTGAAGTACTTCCATCGGCACTAGTCCTCTTC
ATTCTCCGTAAGCTACCTCCAAAGAGAGTATCAGCTCAGTACCATCCGAT
CCAGTAGACTCGTTTTTTTTTTTACCTGAAGCCATCACACGGTGACTCTG
ATGATGATGTTGCAAGAGATAGAGAGTAAAGAGTCAGTTAAGAAAATGTG
GTCAAGATTTGCTGGCGGATGTTTGATTGTTATGTTATGTTTGGTTGAAA
ATAATAACACAACCAATTAATTGCCAACTCTTTTTGGTTTTTTGGTAGCA
AATGGTACACTGTTCTGACCATAATAAACCGAATTGAGAGCATTGGTATC
AAAATAACAGGCCTTGGGCCGATCAAATAAGC
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protein sequence of BnaA01T0038500WE

>BnaA01T0038500WE-P ID=BnaA01T0038500WE-P|Name=BnaA01T0038500WE|organism=Brassica napus Westar|type=polypeptide|length=292bp
MRDSSVMMPVEMARIFATGMKNWWEEVNESTQWQDGIFFSLCGAYALVSA
IALVQLVRIQMRVPEYGWTTQKVFHLMNFVVNGVRAVLFGFHHQVFLVHP
KALCWILLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKLRITYISVNV
AVYLAQVVIWVCIWVNDNSTVELVGKIFMAVVSFIAALGFLLYGGRLFIM
LRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCIVVGVSAFDRDLTLDVL
DHPVLNLIYYMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ.
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mRNA from alignment at westarv0_A01:2417240..2419984+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0038500WE ID=BnaA01T0038500WE|Name=BnaA01T0038500WE|organism=Brassica napus Westar|type=mRNA|length=2745bp|location=Sequence derived from alignment at westarv0_A01:2417240..2419984+ (Brassica napus Westar)
AAACAACTCACCCCTCTTTTCCTCGCCTCTCTCTCTCCGATTCTCAAGAG
CTGATTAGGGTTTCTCGATTTCAATCGAAAAATCGTACCTTTCTCTCGAT
TTCAGCGGATTGTCGAATCCGAAGTGTGCAATCAATCCATCCTCACCCTG
AAAAGCTAGCAGAGAAAGGAGGAGGAGGATAATGAGGGATTCGAGCGTGA
TGATGCCTGTGGAGATGGCGCGAATCTTCGCGACGGGGATGAAGAATTGG
TGGGAGGAGGTTAACGAGTCAACTCAGTGGCAAGATGGGATCTTCTTCTC
TCTCTGTGGAGCTTATGCTCTTGTCTCAGCCATCGCTCTTGTACGATTCT
CTCTCTTTCTAACAAATACGTTTTATTTAAGTGTCTTGATTTGAGGGGTG
TGTCTAGGTCAAATGTGTTACGTGCTTAAACTGTATTTCCTCTTTTGTTA
AAAAGAAGATGTCTTTGAACATATAATCTAGTGGCAGTCTTTCTTTGTTA
TTGTGTTTGTTTGTTTGATTTGATGAAACATCGTTTTCTGTGTAAGTTAT
GGAACTTTTAGTAATGCTGAATGATTGAGAAAGCTCTACACTTCGTGTTC
CGGTAGATTGTGGATGTGTTGCAGTTTTTGACTTTTGTTTGAATTGTGTT
GTGTTGTGGTTGGAAGGTTCAATTGGTGAGGATCCAAATGAGAGTGCCTG
AATATGGCTGGACCACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTC
AATGGAGGTGCTGATCATCTTTGTTTTCCTGTTGACAAACGAGAGGATTG
TGTGTGTGTGTGTGTGTTATAGCTTTGATTTTATTTTTTTTTCTTTGTGC
AGTTCGTGCGGTTCTATTTGGATTTCACCATCAAGTCTTTCTCGTGCATC
CCAAGGTGAGATAGTCTGCTCGAGTGATGTTCTGGTGACACTAAAATCGT
ATGCGTTGGTTTGTTTTTTTGAGAGCAAATTCACTTTGAGATACAAATAT
GATAGCATGTTTCTGTGCATTTTATATCTCTGCTCGAGTTTGGATACTAC
ATCTTTTTAAGTATCTAACGTTGTTGTTGACTTGAGGTAATGCAGGCTCT
TTGCTGGATATTATTGGATCTTCCGGGCCTCCTCTTTTTCTCGGCATACA
CACTGCTCGTTCTGTTCTGGGCAGAAATATATCACCAGGCAAGTACCTAT
ATAGAATGTTTCTTTTTTATATGCGTGTGTAGACTCTCTGTTTAACCAAC
CAAACAAATTCTAAATATACATGTTGTTTCCACCAATGAGCAGGCGAGAA
GCTTACCAACTGATAAGCTGCGGATAACCTATATCTCAGTCAATGTGGCT
GTCTATTTGGCTCAGGTTCATGTCTAATTCCTATTGTTTTTTTTTTCTCT
CGTCCTTGTCTTGTAATTTTGTAGTTGTTCTTTGCTAGAAAGAATCTATG
TGAACCTTTCTCACTTTTGTAGAAAATTTTAGGTGAATCAAAAGACTAAT
ATGCTTGACATGTGATTGATGTCTGTATCAGGTTGTAATCTGGGTATGCA
TCTGGGTAAATGATAACAGCACGGTGGAGTTAGTTGGAAAGATATTTATG
GCAGGTTAGGTTCCTTGTCTAGTGAAGCAAACTTGCTAAACCCCTTACTG
CTCGATCTTTAAATTTTCTCTTCTCTAAACTCTGTATTAACTTTTGGGAT
TTTTTTCTTCTTTTTGTTATAGTTGTGTCTTTCATCGCTGCGTTAGGCTT
CTTGCTTTACGGAGGAAGGTATGTGTTCTTTGTTTCTTTATGTTTTTGTC
TCATAAATCAAAAATGTGTGGAAGTTCTTCAATGGCTTAAATAGGTCGTC
TTTTCGCTTGTGTTTTGTTACATAGATTGTTTATTATGCTAAGAAGGTTC
CCCATTGAGTCAAAAGGGAGAAGGAAGAAGCTCCATGAGGTAGTCATTGT
GCTTGTGCACCTTTGTTTTAGAGTTCCGTACACAAGACATATTTGCTTTC
GAATTCGCTGTGTTTCATCGAGTAGCCTTTGTGATAGAAATGGTATTCAA
TTCAATTGCAGGTTGGATCTGTGACAGCCATATGCTTCACTTGCTTCCTC
ATAAGATGCATTGTGGTAAGCTCTGAGATATAGAATCTAAAGAATGAAAT
CTATCATGAGTGTTTTTTATAATGTTTCTTTCTTGCACAACGTTTCAGGT
GGGTGTGTCAGCATTTGACAGGGATTTAACGCTGGATGTTCTTGATCACC
CAGTTCTGAACTTAATCTACTATATGGTGAGTAACACAAACCTTCATTAA
TTCTCTTGTATCTTAATACATGTATCTGTTTGCTTCACTAACTGAGAATA
AAAAAAAAAAAAAACTAAACTGCGCAGGTGGTTGAAGTACTTCCATCGGC
ACTAGTCCTCTTCATTCTCCGTAAGCTACCTCCAAAGAGAGTATCAGCTC
AGTACCATCCGATCCAGTAGACTCGTTTTTTTTTTTACCTGAAGCCATCA
CACGGTGACTCTGATGATGATGTTGCAAGAGATAGAGAGTAAAGAGTCAG
TTAAGAAAATGTGGTCAAGATTTGCTGGCGGATGTTTGATTGTTATGTTA
TGTTTGGTTGAAAATAATAACACAACCAATTAATTGCCAACTCTTTTTGG
TTTTTTGGTAGCAAATGGTACACTGTTCTGACCATAATAAACCGAATTGA
GAGCATTGGTATCAAAATAACAGGCCTTGGGCCGATCAAATAAGC
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Coding sequence (CDS) from alignment at westarv0_A01:2417240..2419984+

>BnaA01T0038500WE ID=BnaA01T0038500WE|Name=BnaA01T0038500WE|organism=Brassica napus Westar|type=CDS|length=876bp|location=Sequence derived from alignment at westarv0_A01:2417240..2419984+ (Brassica napus Westar)
ATGAGGGATTCGAGCGTGATGATGCCTGTGGAGATGGCGCGAATCTTCGC
GACGGGGATGAAGAATTGGTGGGAGGAGGTTAACGAGTCAACTCAGTGGC
AAGATGGGATCTTCTTCTCTCTCTGTGGAGCTTATGCTCTTGTCTCAGCC
ATCGCTCTTGTTCAATTGGTGAGGATCCAAATGAGAGTGCCTGAATATGG
CTGGACCACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG
TTCGTGCGGTTCTATTTGGATTTCACCATCAAGTCTTTCTCGTGCATCCC
AAGGCTCTTTGCTGGATATTATTGGATCTTCCGGGCCTCCTCTTTTTCTC
GGCATACACACTGCTCGTTCTGTTCTGGGCAGAAATATATCACCAGGCGA
GAAGCTTACCAACTGATAAGCTGCGGATAACCTATATCTCAGTCAATGTG
GCTGTCTATTTGGCTCAGGTTGTAATCTGGGTATGCATCTGGGTAAATGA
TAACAGCACGGTGGAGTTAGTTGGAAAGATATTTATGGCAGTTGTGTCTT
TCATCGCTGCGTTAGGCTTCTTGCTTTACGGAGGAAGATTGTTTATTATG
CTAAGAAGGTTCCCCATTGAGTCAAAAGGGAGAAGGAAGAAGCTCCATGA
GGTTGGATCTGTGACAGCCATATGCTTCACTTGCTTCCTCATAAGATGCA
TTGTGGTGGGTGTGTCAGCATTTGACAGGGATTTAACGCTGGATGTTCTT
GATCACCCAGTTCTGAACTTAATCTACTATATGGTGGTTGAAGTACTTCC
ATCGGCACTAGTCCTCTTCATTCTCCGTAAGCTACCTCCAAAGAGAGTAT
CAGCTCAGTACCATCCGATCCAGTAG
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