BnaA01T0033900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0033900WE
Unique NameBnaA01T0033900WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:2154371..2156258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0033900WEBnaA01G0033900WEBrassica napus Westargenewestarv0_A01 2154371..2156258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0033900WEBnaA01T0033900WE-PBrassica napus Westarpolypeptidewestarv0_A01 2154371..2156258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0033900WE.exon3BnaA01T0033900WE.exon3Brassica napus Westarexonwestarv0_A01 2154371..2154654 -
BnaA01T0033900WE.exon2BnaA01T0033900WE.exon2Brassica napus Westarexonwestarv0_A01 2155732..2156123 -
BnaA01T0033900WE.exon1BnaA01T0033900WE.exon1Brassica napus Westarexonwestarv0_A01 2156182..2156258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0033900WEcds.BnaA01T0033900WEBrassica napus WestarCDSwestarv0_A01 2156182..2156258 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0033900WE ID=BnaA01T0033900WE|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=mRNA|length=753bp|location=Sequence derived from alignment at westarv0_A01:2154371..2156258- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGGAGATCTCAAACCAAATCAAGATTGCATCAATTGCATAACAA
ACGCAGCCAAACAGCTCTTAGAAAGCTTCGAACCATATTAGGTGAAATGG
AGCCAGTTCCCTTATATCACATATTAAGCAACGTTAGCGTGATGGACAAG
GAAGGTTTCAGCAAGGGTTTAGGTGAACTATTGGATTCATTAGGGTCAAA
GATAGTGGATGCGTATGAGACCTCAGCAAGAGTGAAAGGGACAGTCTACG
CGTTGGCTCAGTGTATACCAGATTTGTCTAAATCAGATTGTAGAATTTGT
CTTTCACAGATCTTTGCTGGAGTGCCTACTTGTTGTGATGGCAAGTCAGG
TGGATGGTGGAACAATCCAAGTTGCTATTTTAGGTTTGAAAATTATCTGT
TTTTCGATCTCTCTGTTGTTTCAGAAGAGAAACAACCTCTTTCTCCTCCT
AAGAATGACACCAAAATAAGCATGGAAAAATTGGTTGAAGGAACAGCAGT
GGACCTAATAGTTCATGTTCTTTTGAAATCTTACTCTAAGGAACAATCAA
TGCAATGCCTAGAAATTGCTTTCTCTTGTGTTCAAGAAAATCCTACAAAA
AGACCAACAATGGATTCAGTTGTTTCCATGCTTAGCTCTGATTCTGAGCC
TCTCCGACTCCCAAAGCCATCACAGCCTGGTTTCTTCAGAAGATCAATGT
CGTTTTCGGTTTCTGTTAATGATGTTTCTCTCACAGATTTGTCTGGACGT
TAA
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protein sequence of BnaA01T0033900WE

>BnaA01T0033900WE-P ID=BnaA01T0033900WE-P|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=polypeptide|length=251bp
MQRRSQTKSRLHQLHNKRSQTALRKLRTILGEMEPVPLYHILSNVSVMDK
EGFSKGLGELLDSLGSKIVDAYETSARVKGTVYALAQCIPDLSKSDCRIC
LSQIFAGVPTCCDGKSGGWWNNPSCYFRFENYLFFDLSVVSEEKQPLSPP
KNDTKISMEKLVEGTAVDLIVHVLLKSYSKEQSMQCLEIAFSCVQENPTK
RPTMDSVVSMLSSDSEPLRLPKPSQPGFFRRSMSFSVSVNDVSLTDLSGR
.
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mRNA from alignment at westarv0_A01:2154371..2156258-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0033900WE ID=BnaA01T0033900WE|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=mRNA|length=1888bp|location=Sequence derived from alignment at westarv0_A01:2154371..2156258- (Brassica napus Westar)
ATGCAGAGGAGATCTCAAACCAAATCAAGATTGCATCAATTGCATAACAA
ACGCAGCCAAACAGCTCTTAGAAAGCTGTCCAAACATCGTGGAAGCCGAC
ATATAGCTGGAAAAATGCATGTTTCGTTACACAAGTCGAACCATATTAGG
TGAAATGGAGCCAGTTCCCTTATATCACATATTAAGCAACGTTAGCGTGA
TGGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGAACTATTGGATTCATTA
GGGTCAAAGATAGTGGATGCGTATGAGACCTCAGCAAGAGTGAAAGGGAC
AGTCTACGCGTTGGCTCAGTGTATACCAGATTTGTCTAAATCAGATTGTA
GAATTTGTCTTTCACAGATCTTTGCTGGAGTGCCTACTTGTTGTGATGGC
AAGTCAGGTGGATGGTGGAACAATCCAAGTTGCTATTTTAGGTTTGAAAA
TTATCTGTTTTTCGATCTCTCTGTTGTTTCAGAAGAGAAACAACCTCTTT
CTCCTCCTAAGAATGACACCAAAATAAGTGATTAAGGTAAAACAAGTTAA
GCTGATGTCATGAAAAGAATTAGATGTTTAGGGTTTACCTTTTGATTCTA
TGCTGTTACTTGCAGTAAACGGTTCTAAAACTCTGGTATTTGCCGTGATT
CCCATTGTGACAATTGTCTTAGTTCTTATCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTTTATCTACTTAATGAGGAGGAAGAAAAATCTAAAGGAAGAAGC
TGAAAGTAAGTTTGTGAAGCCTAACTGACTATTCTTTAACCCTATTATTG
ATCTCCTTCTTACTAGTTACTTGTCCCGCAAGCGAATTTCAATCTGCAGA
TGAGATTGAGAGTACATACTCATTGCATTTTGATTTTGACACCATAAGAG
TAGCAACAGATGATTTCTCTTTAACGACTAAGATTGGTGAAGGCGGTTTT
GGGGCTGTCTACAAGGTTGATTCATCTTTACTATAATCTTCATTCCTCCG
TTTCCAATCTCCATATTAACAAAGCGGCATTGCCTTGTCCTCATCATAGG
AATCTCCCGGGGGTTGCTTTACCTTCACCAAGTCACAGAGTTTTCGATAA
TTCACCGTGTTCTCAAATCCTCCAATGTGCATTTAGATGAACAAATGCAT
CCAAAAATCTCAGATTTTGGAATGGCAAGACAATTTGATTTTTATAAGAC
TCAAGCAACAACAAAAAGAGTTGTTGGAACTTAGTATGTCTAGTTACTCA
AAACCAATCCAGCTAACAAAAGAAGACAAAAAAAAATCAATCTCTCATCT
TTCTTGTTTTTGTTGTGGATATATGGCTCCAGAGTATGCAATGCATGGTA
GATTCTCTGCCAAAACAGATGTTTACAGCTTTGGAGTTCTTGTTCTAGAG
ATCATTACAGGTAAAAGAAACAGTGGCTTAGGGTTTAGTGAAGACACAGA
TCTCCCAACTTTCGTAAGTGCCAAGAAACACACAAATAAGGAACAACAAA
ATCAAACAAAAAAGTGATTTATTCAGTAATGTTATGTCTCTATTTCGTCT
GCAGGCATGGAAAAATTGGTTGAAGGAACAGCAGTGGACCTAATAGTTCA
TGTTCTTTTGAAATCTTACTCTAAGGAACAATCAATGCAATGCCTAGAAA
TTGCTTTCTCTTGTGTTCAAGAAAATCCTACAAAAAGACCAACAATGGAT
TCAGTTGTTTCCATGCTTAGCTCTGATTCTGAGCCTCTCCGACTCCCAAA
GCCATCACAGCCTGGTTTCTTCAGAAGATCAATGTCGTTTTCGGTTTCTG
TTAATGATGTTTCTCTCACAGATTTGTCTGGACGTTAA
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Coding sequence (CDS) from alignment at westarv0_A01:2154371..2156258-

>BnaA01T0033900WE ID=BnaA01T0033900WE|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=CDS|length=753bp|location=Sequence derived from alignment at westarv0_A01:2154371..2156258- (Brassica napus Westar)
ATGCAGAGGAGATCTCAAACCAAATCAAGATTGCATCAATTGCATAACAA
ACGCAGCCAAACAGCTCTTAGAAAGCTTCGAACCATATTAGGTGAAATGG
AGCCAGTTCCCTTATATCACATATTAAGCAACGTTAGCGTGATGGACAAG
GAAGGTTTCAGCAAGGGTTTAGGTGAACTATTGGATTCATTAGGGTCAAA
GATAGTGGATGCGTATGAGACCTCAGCAAGAGTGAAAGGGACAGTCTACG
CGTTGGCTCAGTGTATACCAGATTTGTCTAAATCAGATTGTAGAATTTGT
CTTTCACAGATCTTTGCTGGAGTGCCTACTTGTTGTGATGGCAAGTCAGG
TGGATGGTGGAACAATCCAAGTTGCTATTTTAGGTTTGAAAATTATCTGT
TTTTCGATCTCTCTGTTGTTTCAGAAGAGAAACAACCTCTTTCTCCTCCT
AAGAATGACACCAAAATAAGCATGGAAAAATTGGTTGAAGGAACAGCAGT
GGACCTAATAGTTCATGTTCTTTTGAAATCTTACTCTAAGGAACAATCAA
TGCAATGCCTAGAAATTGCTTTCTCTTGTGTTCAAGAAAATCCTACAAAA
AGACCAACAATGGATTCAGTTGTTTCCATGCTTAGCTCTGATTCTGAGCC
TCTCCGACTCCCAAAGCCATCACAGCCTGGTTTCTTCAGAAGATCAATGT
CGTTTTCGGTTTCTGTTAATGATGTTTCTCTCACAGATTTGTCTGGACGT
TAA
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