BnaA01T0022900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0022900WE
Unique Name	BnaA01T0022900WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:1515241..1518528 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0022900WE	BnaA01G0022900WE	Brassica napus Westar	gene	westarv0_A01 1515241..1518528 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0022900WE	BnaA01T0022900WE-P	Brassica napus Westar	polypeptide	westarv0_A01 1515507..1517830 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0022900WE.exon13	BnaA01T0022900WE.exon13	Brassica napus Westar	exon	westarv0_A01 1515241..1515635 -
BnaA01T0022900WE.exon12	BnaA01T0022900WE.exon12	Brassica napus Westar	exon	westarv0_A01 1515764..1515909 -
BnaA01T0022900WE.exon11	BnaA01T0022900WE.exon11	Brassica napus Westar	exon	westarv0_A01 1516003..1516108 -
BnaA01T0022900WE.exon10	BnaA01T0022900WE.exon10	Brassica napus Westar	exon	westarv0_A01 1516214..1516291 -
BnaA01T0022900WE.exon9	BnaA01T0022900WE.exon9	Brassica napus Westar	exon	westarv0_A01 1516382..1516435 -
BnaA01T0022900WE.exon8	BnaA01T0022900WE.exon8	Brassica napus Westar	exon	westarv0_A01 1516515..1516575 -
BnaA01T0022900WE.exon7	BnaA01T0022900WE.exon7	Brassica napus Westar	exon	westarv0_A01 1516670..1516794 -
BnaA01T0022900WE.exon6	BnaA01T0022900WE.exon6	Brassica napus Westar	exon	westarv0_A01 1516888..1516974 -
BnaA01T0022900WE.exon5	BnaA01T0022900WE.exon5	Brassica napus Westar	exon	westarv0_A01 1517078..1517157 -
BnaA01T0022900WE.exon4	BnaA01T0022900WE.exon4	Brassica napus Westar	exon	westarv0_A01 1517254..1517383 -
BnaA01T0022900WE.exon3	BnaA01T0022900WE.exon3	Brassica napus Westar	exon	westarv0_A01 1517535..1517617 -
BnaA01T0022900WE.exon2	BnaA01T0022900WE.exon2	Brassica napus Westar	exon	westarv0_A01 1517716..1517831 -
BnaA01T0022900WE.exon1	BnaA01T0022900WE.exon1	Brassica napus Westar	exon	westarv0_A01 1518294..1518528 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0022900WE.utr3p1	BnaA01T0022900WE.utr3p1	Brassica napus Westar	three_prime_UTR	westarv0_A01 1515241..1515506 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0022900WE	cds.BnaA01T0022900WE	Brassica napus Westar	CDS	westarv0_A01 1517716..1517830 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0022900WE.utr5p2	BnaA01T0022900WE.utr5p2	Brassica napus Westar	five_prime_UTR	westarv0_A01 1517831..1517831 -
BnaA01T0022900WE.utr5p1	BnaA01T0022900WE.utr5p1	Brassica napus Westar	five_prime_UTR	westarv0_A01 1518294..1518528 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:1515241..1518528-
coding sequence from alignment at westarv0_A01:1515241..1518528-

spliced messenger RNA

>BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=mRNA|length=1696bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
AACGAATCAGTGTCGGCTCTCGGGTTCCGGAAAAAACACACACACAAACA
TTGTACGTCGGATCCAAAACGCGCGTTACTACCAGACAACCGTGAATCTT
TCTTCTTCCGCCATTGCTCGGAACTCGCGTCTTCGGGCAATGTGCAGAAA
CTGAGTCATCCTCCGAGTTAGCAAACCGAAACTTGGAGGTTCAGACTAAT
CCCAAGTTGGGTTTTGTGAGAAACCGCGTTTCCAAAATGTTCAACTTCAA
GCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAATCTTGAAAGCAGAAG
GATTATTTGTCAATATTACATTTGTTCGAAACGCAGTCGCAAGAGGGGCC
GTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTACACCGAGGTTCTGG
AACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGGAGGAGGATGGTGTA
ATAATGTAACAAACTGCCTTAGTCGGATGCATACTCGACTAGGTTCATCC
AAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATTCTTAGCAATAAGAA
ACAATATAATCCTGATTTTTACAATTGGAATAGAGTGAAAGTCAGATACT
GCGACGGGTCATCATTCACCGGAGATGTGCAAGCAGTGAACCCTGCTACT
AATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCTGTTATGCAGGAGTT
GCTAGCTAAAGGCATGAGAAACGCTGAGAATGCTGTTTTGTCCGGGTGTT
CTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACAGTTTCCGTGCTTTA
TTACCGATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTCTTTCT
CAACACAAGAGACGTCTCAGGAGCTCAATACATTAAATCATACTTCAAAG
ATGTGGTTGCTCTACATGGATCAGCAAAGAATTTGCCGAGGACATGCACA
TCAAGATTGACCCCTGCTATGTGTTTCTTCCCGCAATACGTTGCTCGCCA
GATTAGAACTCCTGTATTCATTCTTAATGCCGCATACGACTCTTGGCAGA
TAAAGAACATTTTGGCTCCCCGTGCTGCTGATCCTTATGGAAAATGGCAA
AGTTGTCAACTTGACATCAAGAATTGCCAACCAAACCAGCTCAAAGTTAT
GCAAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGATAGGTCTAGGGAGAT
CTTCATCAAGAGGGATGTTCATAGACTCTTGTTACACTCACTGCCAAACC
GAGACACAAACTTCATGGTTCTGGCAAGATTCTCCCATTCTAAACCGAAC
GACAATAGCAAAAGCCGTTGGAGATTGGGTTTATGACAGAAAATTGTTTC
AGAAGATAGATTGTCCTTATCCTTGTAACCCTACTTGCCACCACAGGGTT
TTCACTCCTCAAGATGCTCCTCCAATTTAAGAAATACATATAGATTTACT
ATTCTTTAAAAAAAGAAAAAGATACTTATAAATGACTCATTTGTCATATT
ATAGTGAAATATTTTTAGGTTTTAGCTATAGAAAAAGAAAAGGTGTGATT
GATTCTTGAGTGTTGAGAATACGCAAAAGGAGTAATTTTCTTCAGCACAT
GTGTGTGCTGAAGCTGCTCTGTTTTCTCTTCCATTCTTATGTAAAATGCA
AAATTGTTACTTGTATTCGAATAAATAAAGTATAATTTTTTCATAA

protein sequence of BnaA01T0022900WE

>BnaA01T0022900WE-P ID=BnaA01T0022900WE-P|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=polypeptide|length=398bp
MFNFKQWLVLVVCSLAILKAEGLFVNITFVRNAVARGAVCLDGSPPAYHL
HRGSGTGINSWLIQLEGGGWCNNVTNCLSRMHTRLGSSKKMVENLAFSAI
LSNKKQYNPDFYNWNRVKVRYCDGSSFTGDVQAVNPATNLHFRGARVWLA
VMQELLAKGMRNAENAVLSGCSAGGLASLMHCDSFRALLPMGTKVKCLSD
AGFFLNTRDVSGAQYIKSYFKDVVALHGSAKNLPRTCTSRLTPAMCFFPQ
YVARQIRTPVFILNAAYDSWQIKNILAPRAADPYGKWQSCQLDIKNCQPN
QLKVMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDSP
ILNRTTIAKAVGDWVYDRKLFQKIDCPYPCNPTCHHRVFTPQDAPPI.

mRNA from alignment at westarv0_A01:1515241..1518528-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=mRNA|length=3288bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)
AACGAATCAGTGTCGGCTCTCGGGTTCCGGAAAAAACACACACACAAACA
TTGTACGTCGGATCCAAAACGCGCGTTACTACCAGACAACCGTGAATCTT
TCTTCTTCCGCCATTGCTCGGAACTCGCGTCTTCGGGCAATGTGCAGAAA
CTGAGTCATCCTCCGAGTTAGCAAACCGAAACTTGGAGGTTCAGACTAAT
CCCAAGTTGGGTTTTGTGAGAAACCGCGTTTCCAAGTAAGTGCGATTGCG
GCAGAAGCTTTCTGTCCAAGAAAGTTTTATTCTTTTCCCAGTGATTCTTT
CTCGTTGATTTCTTCTACGTAGAGGAAAAGATTTGTTCTTTCGTTACTTT
CTGGAAAAAAAAAACATCCTGACACAATCTAATGACCTGATCAAAACTTT
CTGGTTAATTTTTTTGTTCTTTTGTTTTTATTAGCTGGAATTGAAATCTA
ATTAAAATCTACTAAAAACTAAAAAACCATTTATTTTAGACAACAAATGA
TGTAAGCAGATAGTTCCGATCTAATCTAAGCTAAGAGATTTGTCTACTTA
TGTTCGGATCTTCTCTTTTAAGTACTTTTGTTTTGCTTTGCTCAGAGTTG
TCTTTTTGGTACTATCATGCTATTTTCGTTAGCTATTCTCCTTTTTACAT
GTACTTCTGTTTTCTATATTCTTTAATTATTTAATTTCATGTTCCAGAAT
GTTCAACTTCAAGCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAATCT
TGAAAGCAGAAGGATTATTTGTCAATATTACATTTGTTCGAAACGCAGTC
GCAAGAGGGGCCGGTGAGTTTTTTATATATATAATCTTTAATTTGGTCAA
AGTTTTTTTCTTTTTTTTTTCTGTATGTGTTTAATAATTGAAATTCATTA
TTACTTTGCAGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTACACC
GAGGTTCTGGAACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGTCTTG
TTCTGTTTTTTTTTTCTTTATTTAGTTTCTCTTGTGTTCTGTTTGTTCCT
GCTTGTGCTAACCCGATGCTCATATAAAATTTGATCTTTGTGATACTTAT
GAGATGATTCGGAATGAAGATTTTGTGGAAATGATTGATTTTTAGGGAGG
AGGATGGTGTAATAATGTAACAAACTGCCTTAGTCGGATGCATACTCGAC
TAGGTTCATCCAAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATTCTT
AGCAATAAGAAACAATATAATCCTGGTAATTTCTTACTAATTCTTGATCA
AACATAAGTTTGTTTTTATTTATAAATTTTTATCTAATGGGTTTTGAATG
GTGGATTCTTGGAAATGGCAGATTTTTACAATTGGAATAGAGTGAAAGTC
AGATACTGCGACGGGTCATCATTCACCGGAGATGTGCAAGCAGTGAACCC
TGTGAGTATTAACAAGAAAACATTAAGATTTTCTATTTTTTAATGTTGTA
AAGGAAGAGTCAAAATCTTCCTTATTCGATAATCATAAATGGTGATTTGA
TCAGGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCTGTTA
TGCAGGAGTTGCTAGCTAAAGGCATGAGAAACGCTGAGAATGTTAGCTTT
CTTTTTTTCCTCCAACCTCCAAGAAACTCTTTGCAAGCTTTTCTTTACAA
GTTATCTAAAACGTTGATGAAAAAACTATGGCAGGCTGTTTTGTCCGGGT
GTTCTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACAGTTTCCGTGCT
TTATTACCGATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTCTT
TCTCAACACGTAAGACAATTGTTTCACTCTTTATCTGTCACTAACAAAGA
CCAGTGATTTATAGTCTAACAAAAAAAGACATTTCGTTGGTATGTTTTTT
CAGAAGAGACGTCTCAGGAGCTCAATACATTAAATCATACTTCAAAGATG
TGGTTGCTCTACATGTAAGGGTTTATTTGCTTTCTCCCCTATTGTGGGGG
ACTTATTTCTCCTCTAGTGACACTCTTTTCATGCTTTTTTCAGGGATCAG
CAAAGAATTTGCCGAGGACATGCACATCAAGATTGACCCCTGCTATGGTA
AGAAACATTCATGTTATCTCTTTTAAATTCATTTTTTTTGTTTCTCTTCA
AATGTTACTCATATAATCATTACCAACAAAATGGCAGTGTTTCTTCCCGC
AATACGTTGCTCGCCAGATTAGAACTCCTGTATTCATTCTTAATGCCGCA
TACGACTCTTGGCAGGTACGTTATATCTTTGTGTAACTTACCCAAGATGT
TTTAAAACAGATCTTTCAGAATAATCCAAGTTCTAAAAGCTCATCTTTAA
GTTTCATATATCTTTCTCAGATAAAGAACATTTTGGCTCCCCGTGCTGCT
GATCCTTATGGAAAATGGCAAAGTTGTCAACTTGACATCAAGAATTGCCA
ACCAAACCAGCTCAAAGTTATGCAAGGTTAGCCTCAGAACCAAAAGCTAT
GCAAGAGTGTGATATTGTTTTTTTGGATGGTGTTTTCTTAACATCATTGC
ATGGTTTTATGTTATTTAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGAT
AGGTCTAGGGAGATCTTCATCAAGAGGGATGTTCATAGACTCTTGTTACA
CTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCC
ATTCTAAACCGAACGGTAAAATTCACAAAAACTTTTTTTCTACAAATTTT
TGTGAAAATACTAGGTCATAATATTAAATAAAACCAGTATACATTTGTGT
CTTTCTGATCATTTTCTTGTTAATTTTTTGATTATGGGAGCAGACAATAG
CAAAAGCCGTTGGAGATTGGGTTTATGACAGAAAATTGTTTCAGAAGATA
GATTGTCCTTATCCTTGTAACCCTACTTGCCACCACAGGGTTTTCACTCC
TCAAGATGCTCCTCCAATTTAAGAAATACATATAGATTTACTATTCTTTA
AAAAAAGAAAAAGATACTTATAAATGACTCATTTGTCATATTATAGTGAA
ATATTTTTAGGTTTTAGCTATAGAAAAAGAAAAGGTGTGATTGATTCTTG
AGTGTTGAGAATACGCAAAAGGAGTAATTTTCTTCAGCACATGTGTGTGC
TGAAGCTGCTCTGTTTTCTCTTCCATTCTTATGTAAAATGCAAAATTGTT
ACTTGTATTCGAATAAATAAAGTATAATTTTTTCATAA

Coding sequence (CDS) from alignment at westarv0_A01:1515241..1518528-

>BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=CDS|length=1194bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)
ATGTTCAACTTCAAGCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAAT
CTTGAAAGCAGAAGGATTATTTGTCAATATTACATTTGTTCGAAACGCAG
TCGCAAGAGGGGCCGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTA
CACCGAGGTTCTGGAACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGG
AGGAGGATGGTGTAATAATGTAACAAACTGCCTTAGTCGGATGCATACTC
GACTAGGTTCATCCAAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATT
CTTAGCAATAAGAAACAATATAATCCTGATTTTTACAATTGGAATAGAGT
GAAAGTCAGATACTGCGACGGGTCATCATTCACCGGAGATGTGCAAGCAG
TGAACCCTGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCT
GTTATGCAGGAGTTGCTAGCTAAAGGCATGAGAAACGCTGAGAATGCTGT
TTTGTCCGGGTGTTCTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACA
GTTTCCGTGCTTTATTACCGATGGGTACCAAAGTAAAATGTCTTTCAGAT
GCTGGTTTCTTTCTCAACACAAGAGACGTCTCAGGAGCTCAATACATTAA
ATCATACTTCAAAGATGTGGTTGCTCTACATGGATCAGCAAAGAATTTGC
CGAGGACATGCACATCAAGATTGACCCCTGCTATGTGTTTCTTCCCGCAA
TACGTTGCTCGCCAGATTAGAACTCCTGTATTCATTCTTAATGCCGCATA
CGACTCTTGGCAGATAAAGAACATTTTGGCTCCCCGTGCTGCTGATCCTT
ATGGAAAATGGCAAAGTTGTCAACTTGACATCAAGAATTGCCAACCAAAC
CAGCTCAAAGTTATGCAAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGAT
AGGTCTAGGGAGATCTTCATCAAGAGGGATGTTCATAGACTCTTGTTACA
CTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCC
ATTCTAAACCGAACGACAATAGCAAAAGCCGTTGGAGATTGGGTTTATGA
CAGAAAATTGTTTCAGAAGATAGATTGTCCTTATCCTTGTAACCCTACTT
GCCACCACAGGGTTTTCACTCCTCAAGATGCTCCTCCAATTTAA

Orthology

View orthology data for BnaA01T0022900WE