BnaA01T0022900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0022900WE
Unique NameBnaA01T0022900WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:1515241..1518528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0022900WEBnaA01G0022900WEBrassica napus Westargenewestarv0_A01 1515241..1518528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022900WEBnaA01T0022900WE-PBrassica napus Westarpolypeptidewestarv0_A01 1515507..1517830 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022900WE.exon13BnaA01T0022900WE.exon13Brassica napus Westarexonwestarv0_A01 1515241..1515635 -
BnaA01T0022900WE.exon12BnaA01T0022900WE.exon12Brassica napus Westarexonwestarv0_A01 1515764..1515909 -
BnaA01T0022900WE.exon11BnaA01T0022900WE.exon11Brassica napus Westarexonwestarv0_A01 1516003..1516108 -
BnaA01T0022900WE.exon10BnaA01T0022900WE.exon10Brassica napus Westarexonwestarv0_A01 1516214..1516291 -
BnaA01T0022900WE.exon9BnaA01T0022900WE.exon9Brassica napus Westarexonwestarv0_A01 1516382..1516435 -
BnaA01T0022900WE.exon8BnaA01T0022900WE.exon8Brassica napus Westarexonwestarv0_A01 1516515..1516575 -
BnaA01T0022900WE.exon7BnaA01T0022900WE.exon7Brassica napus Westarexonwestarv0_A01 1516670..1516794 -
BnaA01T0022900WE.exon6BnaA01T0022900WE.exon6Brassica napus Westarexonwestarv0_A01 1516888..1516974 -
BnaA01T0022900WE.exon5BnaA01T0022900WE.exon5Brassica napus Westarexonwestarv0_A01 1517078..1517157 -
BnaA01T0022900WE.exon4BnaA01T0022900WE.exon4Brassica napus Westarexonwestarv0_A01 1517254..1517383 -
BnaA01T0022900WE.exon3BnaA01T0022900WE.exon3Brassica napus Westarexonwestarv0_A01 1517535..1517617 -
BnaA01T0022900WE.exon2BnaA01T0022900WE.exon2Brassica napus Westarexonwestarv0_A01 1517716..1517831 -
BnaA01T0022900WE.exon1BnaA01T0022900WE.exon1Brassica napus Westarexonwestarv0_A01 1518294..1518528 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022900WE.utr3p1BnaA01T0022900WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 1515241..1515506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0022900WEcds.BnaA01T0022900WEBrassica napus WestarCDSwestarv0_A01 1517716..1517830 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022900WE.utr5p2BnaA01T0022900WE.utr5p2Brassica napus Westarfive_prime_UTRwestarv0_A01 1517831..1517831 -
BnaA01T0022900WE.utr5p1BnaA01T0022900WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 1518294..1518528 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=mRNA|length=1696bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
AACGAATCAGTGTCGGCTCTCGGGTTCCGGAAAAAACACACACACAAACA
TTGTACGTCGGATCCAAAACGCGCGTTACTACCAGACAACCGTGAATCTT
TCTTCTTCCGCCATTGCTCGGAACTCGCGTCTTCGGGCAATGTGCAGAAA
CTGAGTCATCCTCCGAGTTAGCAAACCGAAACTTGGAGGTTCAGACTAAT
CCCAAGTTGGGTTTTGTGAGAAACCGCGTTTCCAAAATGTTCAACTTCAA
GCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAATCTTGAAAGCAGAAG
GATTATTTGTCAATATTACATTTGTTCGAAACGCAGTCGCAAGAGGGGCC
GTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTACACCGAGGTTCTGG
AACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGGAGGAGGATGGTGTA
ATAATGTAACAAACTGCCTTAGTCGGATGCATACTCGACTAGGTTCATCC
AAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATTCTTAGCAATAAGAA
ACAATATAATCCTGATTTTTACAATTGGAATAGAGTGAAAGTCAGATACT
GCGACGGGTCATCATTCACCGGAGATGTGCAAGCAGTGAACCCTGCTACT
AATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCTGTTATGCAGGAGTT
GCTAGCTAAAGGCATGAGAAACGCTGAGAATGCTGTTTTGTCCGGGTGTT
CTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACAGTTTCCGTGCTTTA
TTACCGATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTCTTTCT
CAACACAAGAGACGTCTCAGGAGCTCAATACATTAAATCATACTTCAAAG
ATGTGGTTGCTCTACATGGATCAGCAAAGAATTTGCCGAGGACATGCACA
TCAAGATTGACCCCTGCTATGTGTTTCTTCCCGCAATACGTTGCTCGCCA
GATTAGAACTCCTGTATTCATTCTTAATGCCGCATACGACTCTTGGCAGA
TAAAGAACATTTTGGCTCCCCGTGCTGCTGATCCTTATGGAAAATGGCAA
AGTTGTCAACTTGACATCAAGAATTGCCAACCAAACCAGCTCAAAGTTAT
GCAAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGATAGGTCTAGGGAGAT
CTTCATCAAGAGGGATGTTCATAGACTCTTGTTACACTCACTGCCAAACC
GAGACACAAACTTCATGGTTCTGGCAAGATTCTCCCATTCTAAACCGAAC
GACAATAGCAAAAGCCGTTGGAGATTGGGTTTATGACAGAAAATTGTTTC
AGAAGATAGATTGTCCTTATCCTTGTAACCCTACTTGCCACCACAGGGTT
TTCACTCCTCAAGATGCTCCTCCAATTTAAGAAATACATATAGATTTACT
ATTCTTTAAAAAAAGAAAAAGATACTTATAAATGACTCATTTGTCATATT
ATAGTGAAATATTTTTAGGTTTTAGCTATAGAAAAAGAAAAGGTGTGATT
GATTCTTGAGTGTTGAGAATACGCAAAAGGAGTAATTTTCTTCAGCACAT
GTGTGTGCTGAAGCTGCTCTGTTTTCTCTTCCATTCTTATGTAAAATGCA
AAATTGTTACTTGTATTCGAATAAATAAAGTATAATTTTTTCATAA
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protein sequence of BnaA01T0022900WE

>BnaA01T0022900WE-P ID=BnaA01T0022900WE-P|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=polypeptide|length=398bp
MFNFKQWLVLVVCSLAILKAEGLFVNITFVRNAVARGAVCLDGSPPAYHL
HRGSGTGINSWLIQLEGGGWCNNVTNCLSRMHTRLGSSKKMVENLAFSAI
LSNKKQYNPDFYNWNRVKVRYCDGSSFTGDVQAVNPATNLHFRGARVWLA
VMQELLAKGMRNAENAVLSGCSAGGLASLMHCDSFRALLPMGTKVKCLSD
AGFFLNTRDVSGAQYIKSYFKDVVALHGSAKNLPRTCTSRLTPAMCFFPQ
YVARQIRTPVFILNAAYDSWQIKNILAPRAADPYGKWQSCQLDIKNCQPN
QLKVMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDSP
ILNRTTIAKAVGDWVYDRKLFQKIDCPYPCNPTCHHRVFTPQDAPPI.
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mRNA from alignment at westarv0_A01:1515241..1518528-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=mRNA|length=3288bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)
AACGAATCAGTGTCGGCTCTCGGGTTCCGGAAAAAACACACACACAAACA TTGTACGTCGGATCCAAAACGCGCGTTACTACCAGACAACCGTGAATCTT TCTTCTTCCGCCATTGCTCGGAACTCGCGTCTTCGGGCAATGTGCAGAAA CTGAGTCATCCTCCGAGTTAGCAAACCGAAACTTGGAGGTTCAGACTAAT CCCAAGTTGGGTTTTGTGAGAAACCGCGTTTCCAAGTAAGTGCGATTGCG GCAGAAGCTTTCTGTCCAAGAAAGTTTTATTCTTTTCCCAGTGATTCTTT CTCGTTGATTTCTTCTACGTAGAGGAAAAGATTTGTTCTTTCGTTACTTT CTGGAAAAAAAAAACATCCTGACACAATCTAATGACCTGATCAAAACTTT CTGGTTAATTTTTTTGTTCTTTTGTTTTTATTAGCTGGAATTGAAATCTA ATTAAAATCTACTAAAAACTAAAAAACCATTTATTTTAGACAACAAATGA TGTAAGCAGATAGTTCCGATCTAATCTAAGCTAAGAGATTTGTCTACTTA TGTTCGGATCTTCTCTTTTAAGTACTTTTGTTTTGCTTTGCTCAGAGTTG TCTTTTTGGTACTATCATGCTATTTTCGTTAGCTATTCTCCTTTTTACAT GTACTTCTGTTTTCTATATTCTTTAATTATTTAATTTCATGTTCCAGAAT GTTCAACTTCAAGCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAATCT TGAAAGCAGAAGGATTATTTGTCAATATTACATTTGTTCGAAACGCAGTC GCAAGAGGGGCCGGTGAGTTTTTTATATATATAATCTTTAATTTGGTCAA AGTTTTTTTCTTTTTTTTTTCTGTATGTGTTTAATAATTGAAATTCATTA TTACTTTGCAGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTACACC GAGGTTCTGGAACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGTCTTG TTCTGTTTTTTTTTTCTTTATTTAGTTTCTCTTGTGTTCTGTTTGTTCCT GCTTGTGCTAACCCGATGCTCATATAAAATTTGATCTTTGTGATACTTAT GAGATGATTCGGAATGAAGATTTTGTGGAAATGATTGATTTTTAGGGAGG AGGATGGTGTAATAATGTAACAAACTGCCTTAGTCGGATGCATACTCGAC TAGGTTCATCCAAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATTCTT AGCAATAAGAAACAATATAATCCTGGTAATTTCTTACTAATTCTTGATCA AACATAAGTTTGTTTTTATTTATAAATTTTTATCTAATGGGTTTTGAATG GTGGATTCTTGGAAATGGCAGATTTTTACAATTGGAATAGAGTGAAAGTC AGATACTGCGACGGGTCATCATTCACCGGAGATGTGCAAGCAGTGAACCC TGTGAGTATTAACAAGAAAACATTAAGATTTTCTATTTTTTAATGTTGTA AAGGAAGAGTCAAAATCTTCCTTATTCGATAATCATAAATGGTGATTTGA TCAGGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCTGTTA TGCAGGAGTTGCTAGCTAAAGGCATGAGAAACGCTGAGAATGTTAGCTTT CTTTTTTTCCTCCAACCTCCAAGAAACTCTTTGCAAGCTTTTCTTTACAA GTTATCTAAAACGTTGATGAAAAAACTATGGCAGGCTGTTTTGTCCGGGT GTTCTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACAGTTTCCGTGCT TTATTACCGATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTCTT TCTCAACACGTAAGACAATTGTTTCACTCTTTATCTGTCACTAACAAAGA CCAGTGATTTATAGTCTAACAAAAAAAGACATTTCGTTGGTATGTTTTTT CAGAAGAGACGTCTCAGGAGCTCAATACATTAAATCATACTTCAAAGATG TGGTTGCTCTACATGTAAGGGTTTATTTGCTTTCTCCCCTATTGTGGGGG ACTTATTTCTCCTCTAGTGACACTCTTTTCATGCTTTTTTCAGGGATCAG CAAAGAATTTGCCGAGGACATGCACATCAAGATTGACCCCTGCTATGGTA AGAAACATTCATGTTATCTCTTTTAAATTCATTTTTTTTGTTTCTCTTCA AATGTTACTCATATAATCATTACCAACAAAATGGCAGTGTTTCTTCCCGC AATACGTTGCTCGCCAGATTAGAACTCCTGTATTCATTCTTAATGCCGCA TACGACTCTTGGCAGGTACGTTATATCTTTGTGTAACTTACCCAAGATGT TTTAAAACAGATCTTTCAGAATAATCCAAGTTCTAAAAGCTCATCTTTAA GTTTCATATATCTTTCTCAGATAAAGAACATTTTGGCTCCCCGTGCTGCT GATCCTTATGGAAAATGGCAAAGTTGTCAACTTGACATCAAGAATTGCCA ACCAAACCAGCTCAAAGTTATGCAAGGTTAGCCTCAGAACCAAAAGCTAT GCAAGAGTGTGATATTGTTTTTTTGGATGGTGTTTTCTTAACATCATTGC ATGGTTTTATGTTATTTAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGAT AGGTCTAGGGAGATCTTCATCAAGAGGGATGTTCATAGACTCTTGTTACA CTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCC ATTCTAAACCGAACGGTAAAATTCACAAAAACTTTTTTTCTACAAATTTT TGTGAAAATACTAGGTCATAATATTAAATAAAACCAGTATACATTTGTGT CTTTCTGATCATTTTCTTGTTAATTTTTTGATTATGGGAGCAGACAATAG CAAAAGCCGTTGGAGATTGGGTTTATGACAGAAAATTGTTTCAGAAGATA GATTGTCCTTATCCTTGTAACCCTACTTGCCACCACAGGGTTTTCACTCC TCAAGATGCTCCTCCAATTTAAGAAATACATATAGATTTACTATTCTTTA AAAAAAGAAAAAGATACTTATAAATGACTCATTTGTCATATTATAGTGAA ATATTTTTAGGTTTTAGCTATAGAAAAAGAAAAGGTGTGATTGATTCTTG AGTGTTGAGAATACGCAAAAGGAGTAATTTTCTTCAGCACATGTGTGTGC TGAAGCTGCTCTGTTTTCTCTTCCATTCTTATGTAAAATGCAAAATTGTT ACTTGTATTCGAATAAATAAAGTATAATTTTTTCATAA
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Coding sequence (CDS) from alignment at westarv0_A01:1515241..1518528-

>BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=CDS|length=1194bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)
ATGTTCAACTTCAAGCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAAT
CTTGAAAGCAGAAGGATTATTTGTCAATATTACATTTGTTCGAAACGCAG
TCGCAAGAGGGGCCGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTA
CACCGAGGTTCTGGAACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGG
AGGAGGATGGTGTAATAATGTAACAAACTGCCTTAGTCGGATGCATACTC
GACTAGGTTCATCCAAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATT
CTTAGCAATAAGAAACAATATAATCCTGATTTTTACAATTGGAATAGAGT
GAAAGTCAGATACTGCGACGGGTCATCATTCACCGGAGATGTGCAAGCAG
TGAACCCTGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCT
GTTATGCAGGAGTTGCTAGCTAAAGGCATGAGAAACGCTGAGAATGCTGT
TTTGTCCGGGTGTTCTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACA
GTTTCCGTGCTTTATTACCGATGGGTACCAAAGTAAAATGTCTTTCAGAT
GCTGGTTTCTTTCTCAACACAAGAGACGTCTCAGGAGCTCAATACATTAA
ATCATACTTCAAAGATGTGGTTGCTCTACATGGATCAGCAAAGAATTTGC
CGAGGACATGCACATCAAGATTGACCCCTGCTATGTGTTTCTTCCCGCAA
TACGTTGCTCGCCAGATTAGAACTCCTGTATTCATTCTTAATGCCGCATA
CGACTCTTGGCAGATAAAGAACATTTTGGCTCCCCGTGCTGCTGATCCTT
ATGGAAAATGGCAAAGTTGTCAACTTGACATCAAGAATTGCCAACCAAAC
CAGCTCAAAGTTATGCAAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGAT
AGGTCTAGGGAGATCTTCATCAAGAGGGATGTTCATAGACTCTTGTTACA
CTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCC
ATTCTAAACCGAACGACAATAGCAAAAGCCGTTGGAGATTGGGTTTATGA
CAGAAAATTGTTTCAGAAGATAGATTGTCCTTATCCTTGTAACCCTACTT
GCCACCACAGGGTTTTCACTCCTCAAGATGCTCCTCCAATTTAA
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