BnaA01T0022600WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0022600WE
Unique NameBnaA01T0022600WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:1497144..1498674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0022600WEBnaA01G0022600WEBrassica napus Westargenewestarv0_A01 1497144..1498674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022600WEBnaA01T0022600WE-PBrassica napus Westarpolypeptidewestarv0_A01 1497215..1498625 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022600WE.exon5BnaA01T0022600WE.exon5Brassica napus Westarexonwestarv0_A01 1497144..1497424 -
BnaA01T0022600WE.exon4BnaA01T0022600WE.exon4Brassica napus Westarexonwestarv0_A01 1497510..1497652 -
BnaA01T0022600WE.exon3BnaA01T0022600WE.exon3Brassica napus Westarexonwestarv0_A01 1497756..1497837 -
BnaA01T0022600WE.exon2BnaA01T0022600WE.exon2Brassica napus Westarexonwestarv0_A01 1498004..1498081 -
BnaA01T0022600WE.exon1BnaA01T0022600WE.exon1Brassica napus Westarexonwestarv0_A01 1498368..1498674 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022600WE.utr3p1BnaA01T0022600WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 1497144..1497214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0022600WEcds.BnaA01T0022600WEBrassica napus WestarCDSwestarv0_A01 1498368..1498625 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0022600WE.utr5p1BnaA01T0022600WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 1498626..1498674 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0022600WE ID=BnaA01T0022600WE|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=mRNA|length=891bp|location=Sequence derived from alignment at westarv0_A01:1497144..1498674- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ACACCTTGTTTGACTCAACAACGACTCGTCTAACCCTTTAGCAGCAGCCA
TGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGCG
CCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAAG
CTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGTT
CTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGCG
GCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGAT
TGAGAAGGTCATTTATCAATGTAGATTCATGGCGTTTCTTGGAACTTTAG
GATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTC
GGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTACT
TCTGGTAGAAGCCATAGATACATACCTTCTAGGAACTGTGATGTTGGTCT
TCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTTCGGAA
ACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGCATGTT
CCCCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGC
TGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTTG
TTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTATG
TATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTA
GGCTCAATGGCTCACACTGAGTTAATCCTGTTGCCTTTTTTAAACAAATG
ACACTTTGTATTATGTGTATAATGTTTTAGTAAAGTTTCAC
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protein sequence of BnaA01T0022600WE

>BnaA01T0022600WE-P ID=BnaA01T0022600WE-P|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=polypeptide|length=257bp
MTTPPCRTINANNAIAAPSPSGMIFHGKRLVKSSSPGLNLPTKRLAWSLS
SPGRFLSSPVASSSTSAAVTSNSTNRLEALEEGIEKVIYQCRFMAFLGTL
GSLLGSVLCFIKGCQYVGDSFVQYSVNRGKVILLLVEAIDTYLLGTVMLV
FGMGLYELFISNLTTSETISHDSVSNRSSLFGMFPLKERPQWLEVKTVSE
LKTKLGHVIVMLLLIGLFDKSRKVAITSVADLLCISASIFLSSACLFLLS
RLNGSH.
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mRNA from alignment at westarv0_A01:1497144..1498674-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0022600WE ID=BnaA01T0022600WE|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=mRNA|length=1531bp|location=Sequence derived from alignment at westarv0_A01:1497144..1498674- (Brassica napus Westar)
ACACCTTGTTTGACTCAACAACGACTCGTCTAACCCTTTAGCAGCAGCCA
TGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGCG
CCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAAG
CTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGTT
CTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGCG
GCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGAT
TGAGAAGGTAAAAAAAAAGGGTCGATTCCAGATTCCATTTAGTTAGTGAA
TTAATCGATAAAATTGTTAACTTTAAGGATTTGAATTTGGTTGTTTATAG
TTTGAAGCAGAGGTTATAATGTGTTCTTAGTTAAAAGATAGAGATTTTTT
TTTTTTAAAGGAAACCAAAGGTAAAAGGGATGATTACTAAAGATCATAAC
ATTGATTGATGTTTGGTAAAGGCTGTCTTTTTTTTTTATCAGTTATAAGG
GATATGAATGGCTCAACGAATAAGAGAACATGTGTTTTTTCAGGTCATTT
ATCAATGTAGATTCATGGCGTTTCTTGGAACTTTAGGATCTCTTTTGGGA
TCGGTTCTGTGTTTCATCAAGGTAAAAGCCACTGCAGATTCTCTTCTTGC
TCTCTCTCTCTCTGGTTTAGATGATATAGTGTTGGAATATGCATAAGAAT
GTCCTAATTTTTTTTAATCTTACAGAAGCAACACATTATATACTCTATAA
ACTATTTTGCTGTTCCTCTAACATTTGATTGGTACAGGGATGTCAGTACG
TCGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTA
CTTCTGGTAGAAGCCATAGGTGAGAAAGTTTGTTGTTATTACTTCTTTTG
TAAGAGCATATTATTATATGCACAGAAACTTTATTGATAAATCATATATG
ATGCTACACAACATATTTGTAGATACATACCTTCTAGGAACTGTGATGTT
GGTCTTCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTT
CGGAAACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGC
ATGTTCCCCTTAAAGGTTGCTCTTTTTTTTTTAAGAATCTTTATAATGGA
TCAAAAATTTCCTTTTTGGTTATGCTAAATCCTTTTTTTGTTTTCTTCAG
GAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAA
GCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTTGTTCGACAAGA
GCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTATGTATCTCTGCT
TCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGG
CTCACACTGAGTTAATCCTGTTGCCTTTTTTAAACAAATGACACTTTGTA
TTATGTGTATAATGTTTTAGTAAAGTTTCAC
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Coding sequence (CDS) from alignment at westarv0_A01:1497144..1498674-

>BnaA01T0022600WE ID=BnaA01T0022600WE|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=CDS|length=771bp|location=Sequence derived from alignment at westarv0_A01:1497144..1498674- (Brassica napus Westar)
ATGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGC
GCCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAA
GCTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGT
TCTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGC
GGCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGA
TTGAGAAGGTCATTTATCAATGTAGATTCATGGCGTTTCTTGGAACTTTA
GGATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGGGATGTCAGTACGT
CGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTAC
TTCTGGTAGAAGCCATAGATACATACCTTCTAGGAACTGTGATGTTGGTC
TTCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTTCGGA
AACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGCATGT
TCCCCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAG
CTGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTT
GTTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTAT
GTATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCT
AGGCTCAATGGCTCACACTGA
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