BnaA01T0017800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0017800WE
Unique Name	BnaA01T0017800WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:1153292..1154536 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0017800WE	BnaA01G0017800WE	Brassica napus Westar	gene	westarv0_A01 1153292..1154536 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0017800WE.exon1	BnaA01T0017800WE.exon1	Brassica napus Westar	exon	westarv0_A01 1153292..1154536 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0017800WE	cds.BnaA01T0017800WE	Brassica napus Westar	CDS	westarv0_A01 1153292..1154536 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0017800WE	BnaA01T0017800WE-P	Brassica napus Westar	polypeptide	westarv0_A01 1153292..1154536 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:1153292..1154536-
coding sequence from alignment at westarv0_A01:1153292..1154536-

spliced messenger RNA

>BnaA01T0017800WE ID=BnaA01T0017800WE|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=mRNA|length=1245bp|location=Sequence derived from alignment at westarv0_A01:1153292..1154536- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATGTGCGATCTTCCACACGATTTGATAAGGGAAAAGATACTCAC
CAATGTTCCAATAACATCTCTGAGAGCAGTGCGGTGTACTTGCAAATTAT
GGAATGCATTATCCAAAGAATTTATCCTTGGTAACGAAACATCAAGGCAG
CATCATGAGTTTCAAGGGTTCATGATGATATCTAATAAGATTTGCCCCTT
TAGAGTCGATATCCAAGGAATCATCAGCAATCACAACAATTTGGTCGATC
CATCCACGAAGAAATTAGATTTACTTGATCAAGTCGAGGTATCTAGAGTA
ATTCACTGTGATGGCTTACTGTTATGCGTCACCAACAACAACTCCAAACT
CTTGGTGTGGAACCCTTATCTTGCGCAAACAAGGTGGATCAGACCGAGAA
TATGTTACGAAAAATCAGACATGTATGCTATTGGTTACGACAACAGCAGT
AAGGTCCGTAACTATAAAATCTTGAGACTTAGTACTAGTCATTATTATGG
CCTAGGCATTGAGTTGGAAATCTACGACTTTAGTTCTGATTCATGGAGCT
TTCTTGGTGTCTTCCCTGACTATAGAATAAATTCTTATCACAGCCTCGTG
AATTTGGCGGGATCTACTTACCTTTTTGCTAGAGTGATCAGAAGAACAAC
TCGTAAAAAGAGAAATCATTATGAGTATTTAGCATCTTTGGAAAATTGTT
TGCTATGTTTTGATTATACAAGTGAGAGATTTGAACAGCACATGCCTCCG
TTTAGCCCTTATTATTATTATACGGATACTGTGGCTTTATCTACAGTTAG
GGAAGATAAACTTGCTGCACATAGTTATGGTTTTTATCAATCGTCTGTGA
CATTGGAGGTTTGGGTTACGAATAAGATTGAGGACAAGGCGGTGTCGTGG
AGCAAGTTTTTAAAGGTGGATATGGGATCAATGGTACCAGTCAGGGATTT
TCTGTGCAATTGGAAAGCTGATTTACTCTTCGTTGATGAGGAGAATAAAG
TCGCTGTGATAATCCATGAAAGCCGAAATTACTCAACCAAGCTCCAACTA
ACAGCTTACATCATTAGAGAAGATGGATACTTCAGATCTATGAACATCGG
TGAAGTGAATTTAAATTTCTCTAGAAAGCTTAGTGTGCAACATGTGTTTT
CCCCTTATCATCCAAGTTTAGTGCAAATCAACCGACGGTCATACCGGGGA
GATGGCTGTGCGAATGGGCATTCGGAACCTTTGGGTAGAGTCTGA

protein sequence of BnaA01T0017800WE

>BnaA01T0017800WE-P ID=BnaA01T0017800WE-P|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=polypeptide|length=415bp
MTMCDLPHDLIREKILTNVPITSLRAVRCTCKLWNALSKEFILGNETSRQ
HHEFQGFMMISNKICPFRVDIQGIISNHNNLVDPSTKKLDLLDQVEVSRV
IHCDGLLLCVTNNNSKLLVWNPYLAQTRWIRPRICYEKSDMYAIGYDNSS
KVRNYKILRLSTSHYYGLGIELEIYDFSSDSWSFLGVFPDYRINSYHSLV
NLAGSTYLFARVIRRTTRKKRNHYEYLASLENCLLCFDYTSERFEQHMPP
FSPYYYYTDTVALSTVREDKLAAHSYGFYQSSVTLEVWVTNKIEDKAVSW
SKFLKVDMGSMVPVRDFLCNWKADLLFVDEENKVAVIIHESRNYSTKLQL
TAYIIREDGYFRSMNIGEVNLNFSRKLSVQHVFSPYHPSLVQINRRSYRG
DGCANGHSEPLGRV.

mRNA from alignment at westarv0_A01:1153292..1154536-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0017800WE ID=BnaA01T0017800WE|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=mRNA|length=1245bp|location=Sequence derived from alignment at westarv0_A01:1153292..1154536- (Brassica napus Westar)
ATGACAATGTGCGATCTTCCACACGATTTGATAAGGGAAAAGATACTCAC
CAATGTTCCAATAACATCTCTGAGAGCAGTGCGGTGTACTTGCAAATTAT
GGAATGCATTATCCAAAGAATTTATCCTTGGTAACGAAACATCAAGGCAG
CATCATGAGTTTCAAGGGTTCATGATGATATCTAATAAGATTTGCCCCTT
TAGAGTCGATATCCAAGGAATCATCAGCAATCACAACAATTTGGTCGATC
CATCCACGAAGAAATTAGATTTACTTGATCAAGTCGAGGTATCTAGAGTA
ATTCACTGTGATGGCTTACTGTTATGCGTCACCAACAACAACTCCAAACT
CTTGGTGTGGAACCCTTATCTTGCGCAAACAAGGTGGATCAGACCGAGAA
TATGTTACGAAAAATCAGACATGTATGCTATTGGTTACGACAACAGCAGT
AAGGTCCGTAACTATAAAATCTTGAGACTTAGTACTAGTCATTATTATGG
CCTAGGCATTGAGTTGGAAATCTACGACTTTAGTTCTGATTCATGGAGCT
TTCTTGGTGTCTTCCCTGACTATAGAATAAATTCTTATCACAGCCTCGTG
AATTTGGCGGGATCTACTTACCTTTTTGCTAGAGTGATCAGAAGAACAAC
TCGTAAAAAGAGAAATCATTATGAGTATTTAGCATCTTTGGAAAATTGTT
TGCTATGTTTTGATTATACAAGTGAGAGATTTGAACAGCACATGCCTCCG
TTTAGCCCTTATTATTATTATACGGATACTGTGGCTTTATCTACAGTTAG
GGAAGATAAACTTGCTGCACATAGTTATGGTTTTTATCAATCGTCTGTGA
CATTGGAGGTTTGGGTTACGAATAAGATTGAGGACAAGGCGGTGTCGTGG
AGCAAGTTTTTAAAGGTGGATATGGGATCAATGGTACCAGTCAGGGATTT
TCTGTGCAATTGGAAAGCTGATTTACTCTTCGTTGATGAGGAGAATAAAG
TCGCTGTGATAATCCATGAAAGCCGAAATTACTCAACCAAGCTCCAACTA
ACAGCTTACATCATTAGAGAAGATGGATACTTCAGATCTATGAACATCGG
TGAAGTGAATTTAAATTTCTCTAGAAAGCTTAGTGTGCAACATGTGTTTT
CCCCTTATCATCCAAGTTTAGTGCAAATCAACCGACGGTCATACCGGGGA
GATGGCTGTGCGAATGGGCATTCGGAACCTTTGGGTAGAGTCTGA

Coding sequence (CDS) from alignment at westarv0_A01:1153292..1154536-

>BnaA01T0017800WE ID=BnaA01T0017800WE|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=CDS|length=1245bp|location=Sequence derived from alignment at westarv0_A01:1153292..1154536- (Brassica napus Westar)
ATGACAATGTGCGATCTTCCACACGATTTGATAAGGGAAAAGATACTCAC
CAATGTTCCAATAACATCTCTGAGAGCAGTGCGGTGTACTTGCAAATTAT
GGAATGCATTATCCAAAGAATTTATCCTTGGTAACGAAACATCAAGGCAG
CATCATGAGTTTCAAGGGTTCATGATGATATCTAATAAGATTTGCCCCTT
TAGAGTCGATATCCAAGGAATCATCAGCAATCACAACAATTTGGTCGATC
CATCCACGAAGAAATTAGATTTACTTGATCAAGTCGAGGTATCTAGAGTA
ATTCACTGTGATGGCTTACTGTTATGCGTCACCAACAACAACTCCAAACT
CTTGGTGTGGAACCCTTATCTTGCGCAAACAAGGTGGATCAGACCGAGAA
TATGTTACGAAAAATCAGACATGTATGCTATTGGTTACGACAACAGCAGT
AAGGTCCGTAACTATAAAATCTTGAGACTTAGTACTAGTCATTATTATGG
CCTAGGCATTGAGTTGGAAATCTACGACTTTAGTTCTGATTCATGGAGCT
TTCTTGGTGTCTTCCCTGACTATAGAATAAATTCTTATCACAGCCTCGTG
AATTTGGCGGGATCTACTTACCTTTTTGCTAGAGTGATCAGAAGAACAAC
TCGTAAAAAGAGAAATCATTATGAGTATTTAGCATCTTTGGAAAATTGTT
TGCTATGTTTTGATTATACAAGTGAGAGATTTGAACAGCACATGCCTCCG
TTTAGCCCTTATTATTATTATACGGATACTGTGGCTTTATCTACAGTTAG
GGAAGATAAACTTGCTGCACATAGTTATGGTTTTTATCAATCGTCTGTGA
CATTGGAGGTTTGGGTTACGAATAAGATTGAGGACAAGGCGGTGTCGTGG
AGCAAGTTTTTAAAGGTGGATATGGGATCAATGGTACCAGTCAGGGATTT
TCTGTGCAATTGGAAAGCTGATTTACTCTTCGTTGATGAGGAGAATAAAG
TCGCTGTGATAATCCATGAAAGCCGAAATTACTCAACCAAGCTCCAACTA
ACAGCTTACATCATTAGAGAAGATGGATACTTCAGATCTATGAACATCGG
TGAAGTGAATTTAAATTTCTCTAGAAAGCTTAGTGTGCAACATGTGTTTT
CCCCTTATCATCCAAGTTTAGTGCAAATCAACCGACGGTCATACCGGGGA
GATGGCTGTGCGAATGGGCATTCGGAACCTTTGGGTAGAGTCTGA

Orthology

View orthology data for BnaA01T0017800WE