BnaA01T0017800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0017800WE
Unique NameBnaA01T0017800WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:1153292..1154536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0017800WEBnaA01G0017800WEBrassica napus Westargenewestarv0_A01 1153292..1154536 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0017800WE.exon1BnaA01T0017800WE.exon1Brassica napus Westarexonwestarv0_A01 1153292..1154536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0017800WEcds.BnaA01T0017800WEBrassica napus WestarCDSwestarv0_A01 1153292..1154536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0017800WEBnaA01T0017800WE-PBrassica napus Westarpolypeptidewestarv0_A01 1153292..1154536 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0017800WE ID=BnaA01T0017800WE|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=mRNA|length=1245bp|location=Sequence derived from alignment at westarv0_A01:1153292..1154536- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATGTGCGATCTTCCACACGATTTGATAAGGGAAAAGATACTCAC
CAATGTTCCAATAACATCTCTGAGAGCAGTGCGGTGTACTTGCAAATTAT
GGAATGCATTATCCAAAGAATTTATCCTTGGTAACGAAACATCAAGGCAG
CATCATGAGTTTCAAGGGTTCATGATGATATCTAATAAGATTTGCCCCTT
TAGAGTCGATATCCAAGGAATCATCAGCAATCACAACAATTTGGTCGATC
CATCCACGAAGAAATTAGATTTACTTGATCAAGTCGAGGTATCTAGAGTA
ATTCACTGTGATGGCTTACTGTTATGCGTCACCAACAACAACTCCAAACT
CTTGGTGTGGAACCCTTATCTTGCGCAAACAAGGTGGATCAGACCGAGAA
TATGTTACGAAAAATCAGACATGTATGCTATTGGTTACGACAACAGCAGT
AAGGTCCGTAACTATAAAATCTTGAGACTTAGTACTAGTCATTATTATGG
CCTAGGCATTGAGTTGGAAATCTACGACTTTAGTTCTGATTCATGGAGCT
TTCTTGGTGTCTTCCCTGACTATAGAATAAATTCTTATCACAGCCTCGTG
AATTTGGCGGGATCTACTTACCTTTTTGCTAGAGTGATCAGAAGAACAAC
TCGTAAAAAGAGAAATCATTATGAGTATTTAGCATCTTTGGAAAATTGTT
TGCTATGTTTTGATTATACAAGTGAGAGATTTGAACAGCACATGCCTCCG
TTTAGCCCTTATTATTATTATACGGATACTGTGGCTTTATCTACAGTTAG
GGAAGATAAACTTGCTGCACATAGTTATGGTTTTTATCAATCGTCTGTGA
CATTGGAGGTTTGGGTTACGAATAAGATTGAGGACAAGGCGGTGTCGTGG
AGCAAGTTTTTAAAGGTGGATATGGGATCAATGGTACCAGTCAGGGATTT
TCTGTGCAATTGGAAAGCTGATTTACTCTTCGTTGATGAGGAGAATAAAG
TCGCTGTGATAATCCATGAAAGCCGAAATTACTCAACCAAGCTCCAACTA
ACAGCTTACATCATTAGAGAAGATGGATACTTCAGATCTATGAACATCGG
TGAAGTGAATTTAAATTTCTCTAGAAAGCTTAGTGTGCAACATGTGTTTT
CCCCTTATCATCCAAGTTTAGTGCAAATCAACCGACGGTCATACCGGGGA
GATGGCTGTGCGAATGGGCATTCGGAACCTTTGGGTAGAGTCTGA
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protein sequence of BnaA01T0017800WE

>BnaA01T0017800WE-P ID=BnaA01T0017800WE-P|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=polypeptide|length=415bp
MTMCDLPHDLIREKILTNVPITSLRAVRCTCKLWNALSKEFILGNETSRQ
HHEFQGFMMISNKICPFRVDIQGIISNHNNLVDPSTKKLDLLDQVEVSRV
IHCDGLLLCVTNNNSKLLVWNPYLAQTRWIRPRICYEKSDMYAIGYDNSS
KVRNYKILRLSTSHYYGLGIELEIYDFSSDSWSFLGVFPDYRINSYHSLV
NLAGSTYLFARVIRRTTRKKRNHYEYLASLENCLLCFDYTSERFEQHMPP
FSPYYYYTDTVALSTVREDKLAAHSYGFYQSSVTLEVWVTNKIEDKAVSW
SKFLKVDMGSMVPVRDFLCNWKADLLFVDEENKVAVIIHESRNYSTKLQL
TAYIIREDGYFRSMNIGEVNLNFSRKLSVQHVFSPYHPSLVQINRRSYRG
DGCANGHSEPLGRV.
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mRNA from alignment at westarv0_A01:1153292..1154536-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0017800WE ID=BnaA01T0017800WE|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=mRNA|length=1245bp|location=Sequence derived from alignment at westarv0_A01:1153292..1154536- (Brassica napus Westar)
ATGACAATGTGCGATCTTCCACACGATTTGATAAGGGAAAAGATACTCAC CAATGTTCCAATAACATCTCTGAGAGCAGTGCGGTGTACTTGCAAATTAT GGAATGCATTATCCAAAGAATTTATCCTTGGTAACGAAACATCAAGGCAG CATCATGAGTTTCAAGGGTTCATGATGATATCTAATAAGATTTGCCCCTT TAGAGTCGATATCCAAGGAATCATCAGCAATCACAACAATTTGGTCGATC CATCCACGAAGAAATTAGATTTACTTGATCAAGTCGAGGTATCTAGAGTA ATTCACTGTGATGGCTTACTGTTATGCGTCACCAACAACAACTCCAAACT CTTGGTGTGGAACCCTTATCTTGCGCAAACAAGGTGGATCAGACCGAGAA TATGTTACGAAAAATCAGACATGTATGCTATTGGTTACGACAACAGCAGT AAGGTCCGTAACTATAAAATCTTGAGACTTAGTACTAGTCATTATTATGG CCTAGGCATTGAGTTGGAAATCTACGACTTTAGTTCTGATTCATGGAGCT TTCTTGGTGTCTTCCCTGACTATAGAATAAATTCTTATCACAGCCTCGTG AATTTGGCGGGATCTACTTACCTTTTTGCTAGAGTGATCAGAAGAACAAC TCGTAAAAAGAGAAATCATTATGAGTATTTAGCATCTTTGGAAAATTGTT TGCTATGTTTTGATTATACAAGTGAGAGATTTGAACAGCACATGCCTCCG TTTAGCCCTTATTATTATTATACGGATACTGTGGCTTTATCTACAGTTAG GGAAGATAAACTTGCTGCACATAGTTATGGTTTTTATCAATCGTCTGTGA CATTGGAGGTTTGGGTTACGAATAAGATTGAGGACAAGGCGGTGTCGTGG AGCAAGTTTTTAAAGGTGGATATGGGATCAATGGTACCAGTCAGGGATTT TCTGTGCAATTGGAAAGCTGATTTACTCTTCGTTGATGAGGAGAATAAAG TCGCTGTGATAATCCATGAAAGCCGAAATTACTCAACCAAGCTCCAACTA ACAGCTTACATCATTAGAGAAGATGGATACTTCAGATCTATGAACATCGG TGAAGTGAATTTAAATTTCTCTAGAAAGCTTAGTGTGCAACATGTGTTTT CCCCTTATCATCCAAGTTTAGTGCAAATCAACCGACGGTCATACCGGGGA GATGGCTGTGCGAATGGGCATTCGGAACCTTTGGGTAGAGTCTGA
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Coding sequence (CDS) from alignment at westarv0_A01:1153292..1154536-

>BnaA01T0017800WE ID=BnaA01T0017800WE|Name=BnaA01T0017800WE|organism=Brassica napus Westar|type=CDS|length=1245bp|location=Sequence derived from alignment at westarv0_A01:1153292..1154536- (Brassica napus Westar)
ATGACAATGTGCGATCTTCCACACGATTTGATAAGGGAAAAGATACTCAC
CAATGTTCCAATAACATCTCTGAGAGCAGTGCGGTGTACTTGCAAATTAT
GGAATGCATTATCCAAAGAATTTATCCTTGGTAACGAAACATCAAGGCAG
CATCATGAGTTTCAAGGGTTCATGATGATATCTAATAAGATTTGCCCCTT
TAGAGTCGATATCCAAGGAATCATCAGCAATCACAACAATTTGGTCGATC
CATCCACGAAGAAATTAGATTTACTTGATCAAGTCGAGGTATCTAGAGTA
ATTCACTGTGATGGCTTACTGTTATGCGTCACCAACAACAACTCCAAACT
CTTGGTGTGGAACCCTTATCTTGCGCAAACAAGGTGGATCAGACCGAGAA
TATGTTACGAAAAATCAGACATGTATGCTATTGGTTACGACAACAGCAGT
AAGGTCCGTAACTATAAAATCTTGAGACTTAGTACTAGTCATTATTATGG
CCTAGGCATTGAGTTGGAAATCTACGACTTTAGTTCTGATTCATGGAGCT
TTCTTGGTGTCTTCCCTGACTATAGAATAAATTCTTATCACAGCCTCGTG
AATTTGGCGGGATCTACTTACCTTTTTGCTAGAGTGATCAGAAGAACAAC
TCGTAAAAAGAGAAATCATTATGAGTATTTAGCATCTTTGGAAAATTGTT
TGCTATGTTTTGATTATACAAGTGAGAGATTTGAACAGCACATGCCTCCG
TTTAGCCCTTATTATTATTATACGGATACTGTGGCTTTATCTACAGTTAG
GGAAGATAAACTTGCTGCACATAGTTATGGTTTTTATCAATCGTCTGTGA
CATTGGAGGTTTGGGTTACGAATAAGATTGAGGACAAGGCGGTGTCGTGG
AGCAAGTTTTTAAAGGTGGATATGGGATCAATGGTACCAGTCAGGGATTT
TCTGTGCAATTGGAAAGCTGATTTACTCTTCGTTGATGAGGAGAATAAAG
TCGCTGTGATAATCCATGAAAGCCGAAATTACTCAACCAAGCTCCAACTA
ACAGCTTACATCATTAGAGAAGATGGATACTTCAGATCTATGAACATCGG
TGAAGTGAATTTAAATTTCTCTAGAAAGCTTAGTGTGCAACATGTGTTTT
CCCCTTATCATCCAAGTTTAGTGCAAATCAACCGACGGTCATACCGGGGA
GATGGCTGTGCGAATGGGCATTCGGAACCTTTGGGTAGAGTCTGA
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