BnaA01T0010900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0010900WE
Unique NameBnaA01T0010900WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:694109..695259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0010900WEBnaA01G0010900WEBrassica napus Westargenewestarv0_A01 694109..695259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0010900WE.exon1BnaA01T0010900WE.exon1Brassica napus Westarexonwestarv0_A01 694109..694351 +
BnaA01T0010900WE.exon2BnaA01T0010900WE.exon2Brassica napus Westarexonwestarv0_A01 695023..695259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0010900WEcds.BnaA01T0010900WEBrassica napus WestarCDSwestarv0_A01 694109..694351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0010900WEBnaA01T0010900WE-PBrassica napus Westarpolypeptidewestarv0_A01 694109..695259 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0010900WE ID=BnaA01T0010900WE|Name=BnaA01T0010900WE|organism=Brassica napus Westar|type=mRNA|length=480bp|location=Sequence derived from alignment at westarv0_A01:694109..695259+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTCTTAAAGAAGCTCGCGGGCGTGTTTGGATTTGGGCAGGAAGC
TGTAAAGAATGAGGAAGACGATACAGTCATCGATTCCGGCGACGGAGATA
AGCGGCGGGAGAATAACCAGCCGAGATTTCGTGAAACCGGACAACCCAGG
AAAGGATTTGGAGTTCCGGTTCAAGTCGCCGTCGAAAGGTCTCAACTTGG
TCCTGTTCTTCAGCCTTGCTCCGCCGGAGACGGTGGTATTCAGGGACTAA
GGTGGTATACAAAACGGTCAAGGGTTGATGAAGATGGAGATGTCGCGGAT
GAGTTTTTGGAAGAGGGAGACAACCCGACAAACGCAGAAGATGATCATAG
CTCTAAGACAATGCCAAGGCTTGAGGCGAAACGCAAAACAAAACCTGCTA
AAGTAAGAAGACTGGTTGTGTCTTCTGATGGTAAACTCAAGCAATGCATT
GAACATCAAGGAAGATTATTTATAGTATGA
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protein sequence of BnaA01T0010900WE

>BnaA01T0010900WE-P ID=BnaA01T0010900WE-P|Name=BnaA01T0010900WE|organism=Brassica napus Westar|type=polypeptide|length=160bp
MGFLKKLAGVFGFGQEAVKNEEDDTVIDSGDGDKRRENNQPRFRETGQPR
KGFGVPVQVAVERSQLGPVLQPCSAGDGGIQGLRWYTKRSRVDEDGDVAD
EFLEEGDNPTNAEDDHSSKTMPRLEAKRKTKPAKVRRLVVSSDGKLKQCI
EHQGRLFIV.
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mRNA from alignment at westarv0_A01:694109..695259+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0010900WE ID=BnaA01T0010900WE|Name=BnaA01T0010900WE|organism=Brassica napus Westar|type=mRNA|length=1151bp|location=Sequence derived from alignment at westarv0_A01:694109..695259+ (Brassica napus Westar)
ATGGGGTTCTTAAAGAAGCTCGCGGGCGTGTTTGGATTTGGGCAGGAAGC
TGTAAAGAATGAGGAAGACGATACAGTCATCGATTCCGGCGACGGAGATA
AGCGGCGGGAGAATAACCAGCCGAGATTTCGTGAAACCGGACAACCCAGG
AAAGGATTTGGAGTTCCGGTTCAAGTCGCCGTCGAAAGGTCTCAACTTGG
TCCTGTTCTTCAGCCTTGCTCCGCCGGAGACGGTGGTATTCAGGTTTTTT
ATTTTTTTTTTTGAATTTTTCCGATCCTTGACTTAGTTTGATTACTTGTT
GATTGCTTTACTGGAGTCTGGAACTTGACTTACGAGTTCTCTAGTTAGCT
TAAGTACAAAACTCCCAAAACATTTAGCTTTCTGATCGAGTAGGTTCGTT
TGAAGATGTGAACTAGCAAAAAAAAAAGATTCCTTCTTTAACCGTTACTA
ATCATAGATCATGTGAAGTTACTAGAAAAGATTCCTTCTTTAACCGTTAC
TAATCGTAGATAATGGTTCTACATATAGTCCTTGGCTTAATTTCTTAGTT
TGGTTTACAAAAATTGGTTTTGTCTCTTCTTCAGCGGCAGCATTACCTCA
GTTGCTCTAGCTTAGATTGCTTAGAATGGTAGAGTAGTAGACATGCAGAC
AATATGTAGAAACCAAGTACTCCAATTATCACTTGCTCTGTAGTGGAAGC
CAAACTATAATCTTTTCTATGACTTAATTGCAATAATCAGTTTCAAACGA
ATCCTGGTTTTGGTGTGGTTTTCTCCAGTAATCTGATTTCCAGTGTTAGA
TTGTGAAGACGTGTTGTGGAGTTTACTTAGTTAAGAGATCGTATTATCTT
CTTCTTGTGTATTTTGTTCTTTTTCCTACACACTGTGTTATAGTTTTCTC
TTGTTTTGAATAAGGGACTAAGGTGGTATACAAAACGGTCAAGGGTTGAT
GAAGATGGAGATGTCGCGGATGAGTTTTTGGAAGAGGGAGACAACCCGAC
AAACGCAGAAGATGATCATAGCTCTAAGACAATGCCAAGGCTTGAGGCGA
AACGCAAAACAAAACCTGCTAAAGTAAGAAGACTGGTTGTGTCTTCTGAT
GGTAAACTCAAGCAATGCATTGAACATCAAGGAAGATTATTTATAGTATG
A
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Coding sequence (CDS) from alignment at westarv0_A01:694109..695259+

>BnaA01T0010900WE ID=BnaA01T0010900WE|Name=BnaA01T0010900WE|organism=Brassica napus Westar|type=CDS|length=480bp|location=Sequence derived from alignment at westarv0_A01:694109..695259+ (Brassica napus Westar)
ATGGGGTTCTTAAAGAAGCTCGCGGGCGTGTTTGGATTTGGGCAGGAAGC
TGTAAAGAATGAGGAAGACGATACAGTCATCGATTCCGGCGACGGAGATA
AGCGGCGGGAGAATAACCAGCCGAGATTTCGTGAAACCGGACAACCCAGG
AAAGGATTTGGAGTTCCGGTTCAAGTCGCCGTCGAAAGGTCTCAACTTGG
TCCTGTTCTTCAGCCTTGCTCCGCCGGAGACGGTGGTATTCAGGGACTAA
GGTGGTATACAAAACGGTCAAGGGTTGATGAAGATGGAGATGTCGCGGAT
GAGTTTTTGGAAGAGGGAGACAACCCGACAAACGCAGAAGATGATCATAG
CTCTAAGACAATGCCAAGGCTTGAGGCGAAACGCAAAACAAAACCTGCTA
AAGTAAGAAGACTGGTTGTGTCTTCTGATGGTAAACTCAAGCAATGCATT
GAACATCAAGGAAGATTATTTATAGTATGA
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