Bnascaffold772T0000100WE-P (polypeptide) Brassica napus Westar

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Bnascaffold772T0000100WE
Unique Name	Bnascaffold772T0000100WE-P
Type	polypeptide
Organism	Brassica napus Westar (cv. Westar, rapeseed)
Sequence length	112

Homology

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAF3590108.1 (hypothetical protein F2Q69_00032158 [Brassica cretica] >CAF1935887.1 unnamed protein product [Brassica napus] >CDY27974.1 BnaC05g43760D [Brassica napus] >VDD47012.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 228 bits (581), Expect = 2.230e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: CAF2102584.1 (unnamed protein product [Brassica napus] >CDY36007.1 BnaA05g29430D [Brassica napus] >VDC73198.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 227 bits (578), Expect = 6.390e-75
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNN+NNAQSLPAKCGVNLPYSISPSTNCDR
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNVNNAQSLPAKCGVNLPYSISPSTNCDR 111

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_013584520.1 (PREDICTED: non-specific lipid-transfer protein 6 [Brassica oleracea var. oleracea] >XP_013675170.1 non-specific lipid-transfer protein 6-like [Brassica napus] >XP_022559257.1 non-specific lipid-transfer protein 6-like [Brassica napus] >KAF8059959.1 hypothetical protein N665_1223s0017 [Sinapis alba] >KAG2272530.1 hypothetical protein Bca52824_067085 [Brassica carinata])

HSP 1 Score: 226 bits (576), Expect = 1.380e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_009146980.1 (non-specific lipid-transfer protein 6 [Brassica rapa] >XP_013750462.1 non-specific lipid-transfer protein 6-like [Brassica napus] >RID64182.1 hypothetical protein BRARA_E03138 [Brassica rapa])

HSP 1 Score: 225 bits (573), Expect = 3.950e-74
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNN+NNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNVNNAQSLPAKCGVNLPYSISPSTNCD 110

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAG5398996.1 (hypothetical protein IGI04_020810 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 224 bits (571), Expect = 7.980e-74
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLALFLV+AFHRGEAAVSCN+VVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSLLLALFLVIAFHRGEAAVSCNSVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_018432762.1 (PREDICTED: non-specific lipid-transfer protein 6 [Raphanus sativus])

HSP 1 Score: 222 bits (565), Expect = 6.570e-73
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRS+LLALFLVLAFH GEAAVSCNAVVGDLYPCLSYVVQGGNVP NCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD
Sbjct:    1 MRSILLALFLVLAFHHGEAAVSCNAVVGDLYPCLSYVVQGGNVPTNCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: ESQ49197.1 (hypothetical protein EUTSA_v10021759mg [Eutrema salsugineum])

HSP 1 Score: 199 bits (507), Expect = 7.760e-64
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSLLLA+ LVLA H GEAAVSCN+VV +LYPC+SYVVQGGNVPA+CCNGIRTLN QAQTP DRQ VCRCIKNAIGGVS+SSNNLNNA SLPAKCGVNLPY ISPSTNCDR
Sbjct:    1 MRSLLLAVCLVLALHCGEAAVSCNSVVSELYPCISYVVQGGNVPASCCNGIRTLNGQAQTPADRQSVCRCIKNAIGGVSYSSNNLNNALSLPAKCGVNLPYRISPSTNCDR 111

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: XP_006407743.1 (non-specific lipid-transfer protein 6 [Eutrema salsugineum] >ESQ49196.1 hypothetical protein EUTSA_v10021759mg [Eutrema salsugineum])

HSP 1 Score: 197 bits (502), Expect = 2.680e-63
Identity = 95/110 (86.36%), Postives = 101/110 (91.82%), Query Frame = 0

Query:    1 MRSLLLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPANCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCD 110
            MRSLLLA+ LVLA H GEAAVSCN+VV +LYPC+SYVVQGGNVPA+CCNGIRTLN QAQTP DRQ VCRCIKNAIGGVS+SSNNLNNA SLPAKCGVNLPY ISPSTNCD
Sbjct:    1 MRSLLLAVCLVLALHCGEAAVSCNSVVSELYPCISYVVQGGNVPASCCNGIRTLNGQAQTPADRQSVCRCIKNAIGGVSYSSNNLNNALSLPAKCGVNLPYRISPSTNCD 110

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAF3552389.1 (hypothetical protein DY000_02003865 [Brassica cretica] >KAG2294995.1 hypothetical protein Bca52824_041664 [Brassica carinata])

HSP 1 Score: 191 bits (486), Expect = 7.370e-61
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0

Query:    1 MRSL-LLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPA-NCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSL LLALFLVLAFH GEAAV+CN VVGDLYPCLSYV+QGGN P+ NCCNG+RTLNSQAQT  DRQ VCRCIKNAIGG S+SS+NLNNA SLPAKCGVNLP+SISPSTNC+R
Sbjct:    1 MRSLFLLALFLVLAFHHGEAAVTCNNVVGDLYPCLSYVMQGGNAPSTNCCNGVRTLNSQAQTTADRQSVCRCIKNAIGGASYSSSNLNNALSLPAKCGVNLPFSISPSTNCNR 113

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BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Match: KAF3509863.1 (hypothetical protein F2Q69_00003204 [Brassica cretica])

HSP 1 Score: 191 bits (486), Expect = 1.020e-60
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0

Query:    1 MRSL-LLALFLVLAFHRGEAAVSCNAVVGDLYPCLSYVVQGGNVPA-NCCNGIRTLNSQAQTPVDRQGVCRCIKNAIGGVSFSSNNLNNAQSLPAKCGVNLPYSISPSTNCDR 111
            MRSL LLALFLVLAFH GEAAV+CN VVGDLYPCLSYV+QGGN P+ NCCNG+RTLNSQAQT  DRQ VCRCIKNAIGG S+SS+NLNNA SLPAKCGVNLP+SISPSTNC+R
Sbjct:    1 MRSLFLLALFLVLAFHHGEAAVTCNNVVGDLYPCLSYVMQGGNAPSTNCCNGVRTLNSQAQTTADRQSVCRCIKNAIGGASYSSSNLNNALSLPAKCGVNLPFSISPSTNCNR 113

The following BLAST results are available for this feature:

BLAST of Bnascaffold772T0000100WE vs. GenBank_protein

BLAST of Bnascaffold772T0000100WE vs. GenBank_protein
Analysis Date: 2022-04-13 (Diamond on OGS1.0 vs NR)
Total hits: 20

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POSITION

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Match Name	E-value	Identity	Description
KAF3590108.1	2.230e-75	100.00	hypothetical protein F2Q69_00032158 [Brassica cret...	[more]
CAF2102584.1	6.390e-75	99.10	unnamed protein product [Brassica napus] >CDY36007...	[more]
XP_013584520.1	1.380e-74	100.00	PREDICTED: non-specific lipid-transfer protein 6 [...	[more]
XP_009146980.1	3.950e-74	99.09	non-specific lipid-transfer protein 6 [Brassica ra...	[more]
KAG5398996.1	7.980e-74	98.18	hypothetical protein IGI04_020810 [Brassica rapa s...	[more]
XP_018432762.1	6.570e-73	97.27	PREDICTED: non-specific lipid-transfer protein 6 [...	[more]
ESQ49197.1	7.760e-64	86.49	hypothetical protein EUTSA_v10021759mg [Eutrema sa...	[more]
XP_006407743.1	2.680e-63	86.36	non-specific lipid-transfer protein 6 [Eutrema sal...	[more]
KAF3552389.1	7.370e-61	84.07	hypothetical protein DY000_02003865 [Brassica cret...	[more]
KAF3509863.1	1.020e-60	84.07	hypothetical protein F2Q69_00003204 [Brassica cret...	[more]

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InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-04-13

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 22..38 score: 39.82 coord: 42..56 score: 41.54 coord: 63..78 score: 43.46 coord: 82..99 score: 41.54 coord: 100..111 score: 53.97
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 6..110
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 23..109 e-value: 2.8E-14 score: 63.5
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 23..109 e-value: 6.5E-8 score: 32.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 20..111 e-value: 2.9E-28 score: 100.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 22..110
None	No IPR available	PANTHER	PTHR33076:SF50	NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED	coord: 6..110
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..111
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	CDD	cd01960	nsLTP1	coord: 21..110 e-value: 1.30241E-32 score: 107.436
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.938
None	No IPR available	SIGNALP_GRAM_NEGATIVE	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.758
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..19 score: 0.522