Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0067800WE | BnaA01G0067800WE | Brassica napus Westar | gene | westarv0_A01 4601835..4602976 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0067800WE.utr5p1 | BnaA01T0067800WE.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 4601835..4601887 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0067800WE.exon1 | BnaA01T0067800WE.exon1 | Brassica napus Westar | exon | westarv0_A01 4601835..4602282 + |
| BnaA01T0067800WE.exon2 | BnaA01T0067800WE.exon2 | Brassica napus Westar | exon | westarv0_A01 4602569..4602976 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0067800WE | cds.BnaA01T0067800WE | Brassica napus Westar | CDS | westarv0_A01 4601888..4602282 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0067800WE.utr3p1 | BnaA01T0067800WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 4602738..4602976 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0067800WE ID=BnaA01T0067800WE|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=mRNA|length=856bp|location=Sequence derived from alignment at westarv0_A01:4601835..4602976+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
AAATACATACACATCCTTTTCTCTTCGATCTCTCTCAATTCACAAGAAGC
AAAATGACGGATACAGCTAGAACCCATCACGATATCACAAGTCGAGATCA
GTATCCCCGAGACCGAGACCAGTATTCTATGATCGGTCGAGACCGAGACA
AGTATTCCATGATTGGCCGAGACCGAGACCAGTACAACATGTATGGTCGA
GACTACTCCAAGTCTAGACAGATTGCTAAGGCTGTTACCGCAGTCACGGC
CGGTGGGTCCCTTCTTGTCCTCTCCAGTCTCACCCTTGTCGGAACTGTCA
TTGCTCTGACTGTTGCGACTCCTCTGCTTGTTATCTTTAGTCCAATCCTT
GTCCCTGCTCTCATCACCGTTGCATTGCTCATCACCGGCTTTCTCTCCTC
TGGTGGCTTTGGCATTGCAGCTATAACCGTCTTCTCTTGGATCTACAAGT
ATGCAACGGGAGAGCACCCACAAGGGTCAGATAAACTGGACAGTGCAAGG
ATGAAGCTGGGAGGCAAAGTTCAGGATATGAAGGACAGAGCTCAGTACTA
TGGACAACAGCAAACAGGTGGGGAACACGACCGTGACCGTACCCGTGGAA
CCCAGCACACTACCTAAATTACGCCATGACTATTTTCATAGTCCAATAAG
GCTGATGTCGGGAGTCCAGTTTATGAGCAATAAGGTGTTTAGAATTTGAT
CAATGTTTATAATAAAAGGGGGAAGATGATATCACAGTCTTTTTTTCTTT
TTGGCTTTTGTTAAATTTGTGTGTTTCTATTTGTAAACCTTCTGTATATG
TTGTACTTCTTTCCCTTTTTAAGTGGTATCGTCTATATGGTAAAACGTTA
TGTTTG back to topprotein sequence of BnaA01T0067800WE >BnaA01T0067800WE-P ID=BnaA01T0067800WE-P|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=polypeptide|length=188bp
MTDTARTHHDITSRDQYPRDRDQYSMIGRDRDKYSMIGRDRDQYNMYGRD
YSKSRQIAKAVTAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILV
PALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSARM
KLGGKVQDMKDRAQYYGQQQTGGEHDRDRTRGTQHTT. back to topmRNA from alignment at westarv0_A01:4601835..4602976+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0067800WE ID=BnaA01T0067800WE|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=mRNA|length=1142bp|location=Sequence derived from alignment at westarv0_A01:4601835..4602976+ (Brassica napus Westar)
AAATACATACACATCCTTTTCTCTTCGATCTCTCTCAATTCACAAGAAGC
AAAATGACGGATACAGCTAGAACCCATCACGATATCACAAGTCGAGATCA
GTATCCCCGAGACCGAGACCAGTATTCTATGATCGGTCGAGACCGAGACA
AGTATTCCATGATTGGCCGAGACCGAGACCAGTACAACATGTATGGTCGA
GACTACTCCAAGTCTAGACAGATTGCTAAGGCTGTTACCGCAGTCACGGC
CGGTGGGTCCCTTCTTGTCCTCTCCAGTCTCACCCTTGTCGGAACTGTCA
TTGCTCTGACTGTTGCGACTCCTCTGCTTGTTATCTTTAGTCCAATCCTT
GTCCCTGCTCTCATCACCGTTGCATTGCTCATCACCGGCTTTCTCTCCTC
TGGTGGCTTTGGCATTGCAGCTATAACCGTCTTCTCTTGGATCTACAAGT
AAGTGGACATTTAAACATATATTTCAAGTTGTACAATATGTTTTAAGAAG
CGGTAATTTATTAAATAAAACATAATGGTTGAATATAGCGACATGCCTTG
TGAGGGGAAAAAAAGTACAAACCATAAAATTATACATAACCGACAAGTGG
ATTTTTAGATATTACATTAAAATGCCGTTTTACATCATCATTTTGGCTAG
CTATACACAAGACTTGACTTAGCTAGCTTGATACGTACGTGTAGTATATG
ATGCATGCACGTGTGTGTGAATTGTGATGAATAGGTATGCAACGGGAGAG
CACCCACAAGGGTCAGATAAACTGGACAGTGCAAGGATGAAGCTGGGAGG
CAAAGTTCAGGATATGAAGGACAGAGCTCAGTACTATGGACAACAGCAAA
CAGGTGGGGAACACGACCGTGACCGTACCCGTGGAACCCAGCACACTACC
TAAATTACGCCATGACTATTTTCATAGTCCAATAAGGCTGATGTCGGGAG
TCCAGTTTATGAGCAATAAGGTGTTTAGAATTTGATCAATGTTTATAATA
AAAGGGGGAAGATGATATCACAGTCTTTTTTTCTTTTTGGCTTTTGTTAA
ATTTGTGTGTTTCTATTTGTAAACCTTCTGTATATGTTGTACTTCTTTCC
CTTTTTAAGTGGTATCGTCTATATGGTAAAACGTTATGTTTG back to topCoding sequence (CDS) from alignment at westarv0_A01:4601835..4602976+ >BnaA01T0067800WE ID=BnaA01T0067800WE|Name=BnaA01T0067800WE|organism=Brassica napus Westar|type=CDS|length=564bp|location=Sequence derived from alignment at westarv0_A01:4601835..4602976+ (Brassica napus Westar)
ATGACGGATACAGCTAGAACCCATCACGATATCACAAGTCGAGATCAGTA
TCCCCGAGACCGAGACCAGTATTCTATGATCGGTCGAGACCGAGACAAGT
ATTCCATGATTGGCCGAGACCGAGACCAGTACAACATGTATGGTCGAGAC
TACTCCAAGTCTAGACAGATTGCTAAGGCTGTTACCGCAGTCACGGCCGG
TGGGTCCCTTCTTGTCCTCTCCAGTCTCACCCTTGTCGGAACTGTCATTG
CTCTGACTGTTGCGACTCCTCTGCTTGTTATCTTTAGTCCAATCCTTGTC
CCTGCTCTCATCACCGTTGCATTGCTCATCACCGGCTTTCTCTCCTCTGG
TGGCTTTGGCATTGCAGCTATAACCGTCTTCTCTTGGATCTACAAGTATG
CAACGGGAGAGCACCCACAAGGGTCAGATAAACTGGACAGTGCAAGGATG
AAGCTGGGAGGCAAAGTTCAGGATATGAAGGACAGAGCTCAGTACTATGG
ACAACAGCAAACAGGTGGGGAACACGACCGTGACCGTACCCGTGGAACCC
AGCACACTACCTAA back to top
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