Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0063900WE | BnaA01G0063900WE | Brassica napus Westar | gene | westarv0_A01 4416648..4419567 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0063900WE.exon5 | BnaA01T0063900WE.exon5 | Brassica napus Westar | exon | westarv0_A01 4416648..4416844 - |
| BnaA01T0063900WE.exon4 | BnaA01T0063900WE.exon4 | Brassica napus Westar | exon | westarv0_A01 4417055..4417347 - |
| BnaA01T0063900WE.exon3 | BnaA01T0063900WE.exon3 | Brassica napus Westar | exon | westarv0_A01 4417430..4417710 - |
| BnaA01T0063900WE.exon2 | BnaA01T0063900WE.exon2 | Brassica napus Westar | exon | westarv0_A01 4417792..4418098 - |
| BnaA01T0063900WE.exon1 | BnaA01T0063900WE.exon1 | Brassica napus Westar | exon | westarv0_A01 4419281..4419567 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0063900WE | cds.BnaA01T0063900WE | Brassica napus Westar | CDS | westarv0_A01 4419281..4419567 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=mRNA|length=1365bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTTGGCGATCCAATG
GTGTATGAGAGATACTGGCAAGAAATGGGTCATATGACAACAATGGTGAT
AGCTGGATGGCAATCTCTCAGCTATTTTTCAGATAATAACAATGAGCTTT
GTTGGTTTCTTGAACCAGAACTTGCCAAAGAGATTGTAAGAGTGCATAAG
GTTGTTGGTAACGCTGTAACACAAGACCGTTATATTGTTGTTGGCACTGG
CTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATG
ACTCTGGTCCCATTAATGTCGTCTCAGCTGCGCCTTATTATTGCTCATAC
CCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATAGATGGGGAGGAGA
TGCAAAGACATACAAGGAAGAAGGTCCATACATTGAACTTGTTACATCAC
CAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGTGAACCGTAGTGAA
GGTATACTGATCCATGATTTAGCGTACTACTGGCCGCAGTATACGCCTAT
AACATCGATAGCTGATCACGATGTAATGCTCTTCACTGCTTCAAAGAGCA
CTGGCCATGCAGGGATGCGCATTGGATGGGCTTTGGTAAAAGACAAAGAG
ACGGCCAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTC
AAAGGTTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACA
GTTGTGGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCC
ATGTTTGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGG
TTTTACCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAG
TCTTTGAGCCACAACCAGCTTTTGCATGGTTAAAGTGTGAAGAAGGGATT
GTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACCAAAAG
TGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCATGTTAG
ATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTTCCTTC
AATTCAACTTTGTAA back to topprotein sequence of BnaA01T0063900WE >BnaA01T0063900WE-P ID=BnaA01T0063900WE-P|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=polypeptide|length=455bp
MGKVPRILSWRNMLVLSLAVNFSLILRILKGTDGGNSSYVVSIWPVVSNS
LDRTVYGDSKWPVVSTTASGSSSLSSASCNYNETQEDDERIINLKLGDPM
VYERYWQEMGHMTTMVIAGWQSLSYFSDNNNELCWFLEPELAKEIVRVHK
VVGNAVTQDRYIVVGTGSTQLYQAALYALSPHDDSGPINVVSAAPYYCSY
PLITDCLKSGLYRWGGDAKTYKEEGPYIELVTSPNNPDGILRESVVNRSE
GILIHDLAYYWPQYTPITSIADHDVMLFTASKSTGHAGMRIGWALVKDKE
TAKKMTEYIELNTIGVSKVSQLRVAKVLKAVSDSCGNETAKSFFEHSYDA
MFERWKLLKQASKTSKGFTVPDFASQRCNFLGKVFEPQPAFAWLKCEEGI
VDCEKFLREKKNILTKSGKYFGDDLSYVRVSMLDRDSIFNIFLHRISSSF
NSTL. back to topmRNA from alignment at westarv0_A01:4416648..4419567- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=mRNA|length=2920bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTGTAAGTTTCTACT
GCTTTTATTTCTTGATTTCTCATAATTATATCATAATAGGTAATATAGAA
TATACCCTCGTCTAGTCTAGTCTCTTGTGTAATATGTTCCTCTATGCATT
CATAGTACTGAGACTTCCAATAGTATCTCTTTCGACACTCTTCTTAAGTG
TTCTTGATTGCAAATTTTAAAAAGAAACAGTTCTTATCTTCTGGCAGAAC
TGTAATCGCTTGTTTATTCTTTCTTGGTATTGTCAGGTTAATAAATGTGT
ATTAATGGCGTATCATATAGAATCTACAGACAAATTTAATTTCTCCCTTA
TCCCACACTTGATTGCTTTGAAAGTCACTAGCTATTATAGCAACGAATCT
GGGATTATCCTCTTAAGCACCATTCAATTTAAAATTCAAACTTCAAAAGA
GAGCAACGTTACTACTCTAAAAATTGTGATGATCATCTTCATTGACTTGC
CTATTTTTCTAACCAGACTCTATATTTTGCAAGTTACCGTGGAATATGTC
CTAGTTCTGTGTATGGTTCTCTGTTCCTTAACGTACGCCGCTAGTTTGAA
TATTTGGTTCTGTTATTTACTTTCTTATGACTCGTCAAATCAATCCTGAA
AAGTATGCAAAAAATAAAATAAAATTGCATGTTGATTGATCTTGGTGGTC
CATATGGGAATTTGTATGTATTGGTCATAAATGTAAAATGGGTCATTCTT
GTTTGATAATGGACGTAAAGAAGAGAGTGATTTTTATTTATTTATATGGG
TTTGGTATGTGGAATGTTGTGAGAGGGAGGAAGATAGTGAGTGATGTTCC
TTTTTGGATGCTCGCTATTAATTTAGTTAGTGATGCCCAATAAGTTGAAA
CAATGGAAATTAATTAAAATGACTGAGAGAAACTCTTTTGAATTCTAGGC
AAAAGTGAAAAAAAAAAGTAAAGAGGGCCCTCATTTTGGTGGAAATAATT
ATGCATACATACATAAAAAATATATGTCTTTTAAGAGAATCTAAAGGACT
ACTTTAGTGATCTGCTTGACCATGTTCTTTGCTGTTTCAGAAACAGGAAC
GTGTTGTTTTATGCTCTCCATTAACAAAAAAAGGACCCACCAATTCTTTT
TGACTCAAACATTTTGTCGCATTATAAAACTAGTTAATGTACTTTGATCC
ATGCGGTGGTTATATGCAGTGGCGATCCAATGGTGTATGAGAGATACTGG
CAAGAAATGGGTCATATGACAACAATGGTGATAGCTGGATGGCAATCTCT
CAGCTATTTTTCAGATAATAACAATGAGCTTTGTTGGTTTCTTGAACCAG
AACTTGCCAAAGAGATTGTAAGAGTGCATAAGGTTGTTGGTAACGCTGTA
ACACAAGACCGTTATATTGTTGTTGGCACTGGCTCAACACAATTGTATCA
GGCTGCTCTCTATGCTCTCTCCCCACATGATGACTCTGGTCCCATTAATG
TCGTCTCAGCTGCGCCTTATTATTGCGTGAGTTATATTCAGAGCTGTCTT
TCTTGATTTCCTTGGGCATATAAATCACTATAACGTGTGTAACTGGTTTG
GTTGCAGTCATACCCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATA
GATGGGGAGGAGATGCAAAGACATACAAGGAAGAAGGTCCATACATTGAA
CTTGTTACATCACCAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGT
GAACCGTAGTGAAGGTATACTGATCCATGATTTAGCGTACTACTGGCCGC
AGTATACGCCTATAACATCGATAGCTGATCACGATGTAATGCTCTTCACT
GCTTCAAAGAGCACTGGCCATGCAGGGATGCGCATTGGGTACATTCTTGT
TACTATTTTCTTATTTTGTGGGAACAAAACAAAAAATGGGAAGTGTATCT
TGAACCTTACATTTTCCCAGATGGGCTTTGGTAAAAGACAAAGAGACGGC
CAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTCAAAGG
TTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACAGTTGT
GGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCCATGTT
TGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGGTTTTA
CCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAGTCTTT
GAGCCACAACCAGGTACTTTAAAAGAAAAACAAAGTAAATGATTAATATC
AAACTAGTTTATATATATATATATATATATATATCCTACGGGTTGAATCG
GTCGGTTTCGGTAAAAATGCACTTAGTGTTACACTGTGGAATTTTCCCTA
AAGGCCACCATACTACCTGACCTTTGTATCAAACTATTTTTTAACTGATA
CTGTTTGACGTATTTTTGTGCAGCTTTTGCATGGTTAAAGTGTGAAGAAG
GGATTGTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACC
AAAAGTGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCAT
GTTAGATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTT
CCTTCAATTCAACTTTGTAA back to topCoding sequence (CDS) from alignment at westarv0_A01:4416648..4419567- >BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=CDS|length=1365bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTTGGCGATCCAATG
GTGTATGAGAGATACTGGCAAGAAATGGGTCATATGACAACAATGGTGAT
AGCTGGATGGCAATCTCTCAGCTATTTTTCAGATAATAACAATGAGCTTT
GTTGGTTTCTTGAACCAGAACTTGCCAAAGAGATTGTAAGAGTGCATAAG
GTTGTTGGTAACGCTGTAACACAAGACCGTTATATTGTTGTTGGCACTGG
CTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATG
ACTCTGGTCCCATTAATGTCGTCTCAGCTGCGCCTTATTATTGCTCATAC
CCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATAGATGGGGAGGAGA
TGCAAAGACATACAAGGAAGAAGGTCCATACATTGAACTTGTTACATCAC
CAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGTGAACCGTAGTGAA
GGTATACTGATCCATGATTTAGCGTACTACTGGCCGCAGTATACGCCTAT
AACATCGATAGCTGATCACGATGTAATGCTCTTCACTGCTTCAAAGAGCA
CTGGCCATGCAGGGATGCGCATTGGATGGGCTTTGGTAAAAGACAAAGAG
ACGGCCAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTC
AAAGGTTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACA
GTTGTGGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCC
ATGTTTGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGG
TTTTACCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAG
TCTTTGAGCCACAACCAGCTTTTGCATGGTTAAAGTGTGAAGAAGGGATT
GTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACCAAAAG
TGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCATGTTAG
ATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTTCCTTC
AATTCAACTTTGTAA back to top
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