BnaA01T0060300WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0060300WE
Unique Name	BnaA01T0060300WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0060300WE	BnaA01G0060300WE	Brassica napus Westar	gene	westarv0_A01 4186063..4188588 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0060300WE	BnaA01T0060300WE-P	Brassica napus Westar	polypeptide	westarv0_A01 4186063..4188588 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0060300WE.exon13	BnaA01T0060300WE.exon13	Brassica napus Westar	exon	westarv0_A01 4186063..4186248 -
BnaA01T0060300WE.exon12	BnaA01T0060300WE.exon12	Brassica napus Westar	exon	westarv0_A01 4186341..4186401 -
BnaA01T0060300WE.exon11	BnaA01T0060300WE.exon11	Brassica napus Westar	exon	westarv0_A01 4186475..4186542 -
BnaA01T0060300WE.exon10	BnaA01T0060300WE.exon10	Brassica napus Westar	exon	westarv0_A01 4186626..4186832 -
BnaA01T0060300WE.exon9	BnaA01T0060300WE.exon9	Brassica napus Westar	exon	westarv0_A01 4186913..4187003 -
BnaA01T0060300WE.exon8	BnaA01T0060300WE.exon8	Brassica napus Westar	exon	westarv0_A01 4187097..4187185 -
BnaA01T0060300WE.exon7	BnaA01T0060300WE.exon7	Brassica napus Westar	exon	westarv0_A01 4187273..4187347 -
BnaA01T0060300WE.exon6	BnaA01T0060300WE.exon6	Brassica napus Westar	exon	westarv0_A01 4187448..4187584 -
BnaA01T0060300WE.exon5	BnaA01T0060300WE.exon5	Brassica napus Westar	exon	westarv0_A01 4187665..4187719 -
BnaA01T0060300WE.exon4	BnaA01T0060300WE.exon4	Brassica napus Westar	exon	westarv0_A01 4187831..4187947 -
BnaA01T0060300WE.exon3	BnaA01T0060300WE.exon3	Brassica napus Westar	exon	westarv0_A01 4188035..4188249 -
BnaA01T0060300WE.exon2	BnaA01T0060300WE.exon2	Brassica napus Westar	exon	westarv0_A01 4188335..4188392 -
BnaA01T0060300WE.exon1	BnaA01T0060300WE.exon1	Brassica napus Westar	exon	westarv0_A01 4188472..4188588 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0060300WE	cds.BnaA01T0060300WE	Brassica napus Westar	CDS	westarv0_A01 4188472..4188588 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:4186063..4188588-
coding sequence from alignment at westarv0_A01:4186063..4188588-

spliced messenger RNA

>BnaA01T0060300WE ID=BnaA01T0060300WE|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=mRNA|length=1476bp|location=Sequence derived from alignment at westarv0_A01:4186063..4188588- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGAGGAGAATTCACTTGAATATACACCCACATGGGTCGTAGC
GTTTATCTGTTTCATCATCGTTCTCTTGTCCCTGCTCGCTGAACGTGGTC
TTCATCATCTTGGAAAGTATCTGAAGCGTAAAAAACAAGATGCCTTGTTT
GAGGCCTTGCAGAAACTTAAAGAAGAACTGATGCTTTTGGGATTCATCTC
GCTAATGTTAACGGTATCTCAGACAGCAATCAGGCATATATGTGTCCCAC
CAGCTCTTGTTAGCAACATGTTCCCTTGTAAGAAGCCATTAGAGGAGGAG
CATCATGCTCCTGAAACATCTCATTCGCTTGTCTTCAATACACGACATTT
GCTTTCAACAGGAGCAAGTCCAGACCATTGTACTAACAAGGGGAAGGTTC
CTTTAATATCCGTTGAAGCGTTACATCATCTCCATATCTTTATATTCGTG
CTAGCGGTTGTTCACGTCATCTTCTGTGCTTCAACGATGGTTCTTGGAGG
AGCTAGGATACAACAATGGAAGCGTTGGGAGGATAATTTCAAGAAGATTC
CTTCTCAAAAAGATGCATCAAAGCCTGGTCATGCTCATGCTCATCATGCT
CATGCTCATGCACTTCACGAGTTATTTAACGCAAATCACGAGTTCTTCAA
GATGCATGCTGGAGGATTCTGGAGAAGATCTGTTGTCATCAGCTGGCTGA
GATCATTTTGCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATATATA
GCTCTGCGACATGGGTTCATCATGACCCATTGCCCCACAAACCCATCATT
TAATTTTCACAAGTACATGCTAAGAACAGTGGAGATGGATTTCAAGAAAG
TTGTGACCATAAGCTGGTATCTCTGGCTCTTTGTTGTCGTCTTTCTTCTG
CTGAATGTAGGAGGATGGAATACTTACTTCTGGTTGTCTTTCTTGCCTTT
AATATTGTTACTAATGGTGGGTGCGAAACTGGAGAATATAATAAGTAGCT
TAGCTGTGGATGTTTGTGAGAAGAGAAACCGTGGGGAACAAGCAGTAATC
ACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGAGATTGTTCTCCA
ACTCGTCCACTTCATTCTCTTTCAGAATTCATTTGAGATCGCTTTCTTCT
TCTGGATTTTGTTCACATATGGAATACATTCGTGTATCATGGAGAAACTA
GGCTTCCTTATTCCACGGCTTGTCATGGGAGTGTTAGTCCAAGTGCTTTG
CAGTTACAGCACATTGCCACTTTATGCTCTCGTTACACAAATGGGTAGCA
AGTTCAAGAAAGGGATATTCGACGATTTAGTACACTCCACACTGAAAGTA
TGGTTGTCAGATACAAGGAGCAAAGGTGAATCCACGAGCGAGGCTCGCAG
GATGGAGATAGTACCTACCATTCCTGAGTCTTTTAATGTCCAAATCAATG
AAGTTATGGAATGTGACAACCCTTAA

protein sequence of BnaA01T0060300WE

>BnaA01T0060300WE-P ID=BnaA01T0060300WE-P|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=polypeptide|length=492bp
MAEEENSLEYTPTWVVAFICFIIVLLSLLAERGLHHLGKYLKRKKQDALF
EALQKLKEELMLLGFISLMLTVSQTAIRHICVPPALVSNMFPCKKPLEEE
HHAPETSHSLVFNTRHLLSTGASPDHCTNKGKVPLISVEALHHLHIFIFV
LAVVHVIFCASTMVLGGARIQQWKRWEDNFKKIPSQKDASKPGHAHAHHA
HAHALHELFNANHEFFKMHAGGFWRRSVVISWLRSFCKQFYGSVTKSEYI
ALRHGFIMTHCPTNPSFNFHKYMLRTVEMDFKKVVTISWYLWLFVVVFLL
LNVGGWNTYFWLSFLPLILLLMVGAKLENIISSLAVDVCEKRNRGEQAVI
TPSDELFWFHRPEIVLQLVHFILFQNSFEIAFFFWILFTYGIHSCIMEKL
GFLIPRLVMGVLVQVLCSYSTLPLYALVTQMGSKFKKGIFDDLVHSTLKV
WLSDTRSKGESTSEARRMEIVPTIPESFNVQINEVMECDNP.

mRNA from alignment at westarv0_A01:4186063..4188588-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0060300WE ID=BnaA01T0060300WE|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=mRNA|length=2526bp|location=Sequence derived from alignment at westarv0_A01:4186063..4188588- (Brassica napus Westar)
ATGGCAGAAGAGGAGAATTCACTTGAATATACACCCACATGGGTCGTAGC
GTTTATCTGTTTCATCATCGTTCTCTTGTCCCTGCTCGCTGAACGTGGTC
TTCATCATCTTGGAAAGGTACGTATATACATCACTGTCTATATCTGTAAG
TCTAAGGTCTCTTCTTGTAATAACTCTACCATTGTCTCTGTTCCAGTATC
TGAAGCGTAAAAAACAAGATGCCTTGTTTGAGGCCTTGCAGAAACTTAAA
GAAGGTTTCTTCTTCTTTTCAATTTTGGAACATGAATCTGTTGATTGGTT
TACACCTGAACATGACCAAAATTGTGTTTCCTGAAACAGAACTGATGCTT
TTGGGATTCATCTCGCTAATGTTAACGGTATCTCAGACAGCAATCAGGCA
TATATGTGTCCCACCAGCTCTTGTTAGCAACATGTTCCCTTGTAAGAAGC
CATTAGAGGAGGAGCATCATGCTCCTGAAACATCTCATTCGCTTGTCTTC
AATACACGACATTTGCTTTCAACAGGAGCAAGTCCAGACCATTGTACTAA
CAAGGTAATATTTCCCTTGAAACTCCTATCTCACTCTGGATGCTTTTCTA
TTATTAGTATCTTGCTTTTTTTCATCAACATGGTTTTGCAGGGGAAGGTT
CCTTTAATATCCGTTGAAGCGTTACATCATCTCCATATCTTTATATTCGT
GCTAGCGGTTGTTCACGTCATCTTCTGTGCTTCAACGATGGTTCTTGGAG
GAGCTAGGGTAATGTAACTTGCTTTTGTTAGCGTTTTTCGCAAGTAACTG
AACAACATTAGAACTTTCTATTCAAAAGCTTTCTCTTGTTTTGCTCATAT
GATTTGAAATTACATGTAGATACAACAATGGAAGCGTTGGGAGGATAATT
TCAAGAAGATTCCTTCTCAAAAAGGTGAGATTCGACATTGGTATTTTGTT
GATTTTTTTGCGTCTTAAACACCATCTAAATATTAAGAAAAAAACATGTT
TCAGATGCATCAAAGCCTGGTCATGCTCATGCTCATCATGCTCATGCTCA
TGCACTTCACGAGTTATTTAACGCAAATCACGAGTTCTTCAAGATGCATG
CTGGAGGATTCTGGAGAAGATCTGTTGTCATCAGCTGGCTGGTGAGTCTT
GGATACTAATACCAAAACAAACGTATTACACATCAAACAAGTTTGTCTAG
ATCTTATTTGATATCTGATGAGATCATCCAATGTGGTGCAGAGATCATTT
TGCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATATATAGCTCTGCG
ACATGGGTTCATCATGGTCTTACTTCACTCTCTTTTTTCCAACATGTTAT
TTCCAGTCTTTTATGTAACAATAACAATATGTATTATTCCTTCATTTTTC
CAGACCCATTGCCCCACAAACCCATCATTTAATTTTCACAAGTACATGCT
AAGAACAGTGGAGATGGATTTCAAGAAAGTTGTGACCATAAGGTATTTAG
CTCTTTTAGATTACACACACCAATGGCTTCATAAGTTTTTTTGTCTAACA
CCATTTTTGTATGATGTGATGGTATAAATATAAAGCTGGTATCTCTGGCT
CTTTGTTGTCGTCTTTCTTCTGCTGAATGTAGGAGGATGGAATACTTACT
TCTGGTTGTCTTTCTTGCCTTTAATAGTAAGTTCATTTAGTTAATGATCT
AATCATATTTTTGAATTCTTGGAATGCTATACTTCAATGTGTTTATCTAA
ATGTAGTTGTTACTAATGGTGGGTGCGAAACTGGAGAATATAATAAGTAG
CTTAGCTGTGGATGTTTGTGAGAAGAGAAACCGTGGGGAACAAGCAGTAA
TCACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGAGATTGTTCTC
CAACTCGTCCACTTCATTCTCTTTCAGAATTCATTTGAGATCGCTTTCTT
CTTCTGGATTTTGGTACTTTCATTTTTCTTCCTTTTCTAAGAGTTTTGTT
TGAACAATCACAATGCTAATAGATGATTTCTCCATCGTATCATCAGTTCA
CATATGGAATACATTCGTGTATCATGGAGAAACTAGGCTTCCTTATTCCA
CGGCTTGTCATGGGGTAATAACAAGATGCACACTTGCAAGTCTAAATAAA
CTATCATTTGATCTGATGAACTCTTTTGTCCAAACAGAGTGTTAGTCCAA
GTGCTTTGCAGTTACAGCACATTGCCACTTTATGCTCTCGTTACACAAGT
AAGTATATAACCACAACAAGCCTAGCTAATATACACTACACAACTAAACA
AAGTTTTGAATCACTTGTTTTTGTTTTCTAATTCTAAAAGATGGGTAGCA
AGTTCAAGAAAGGGATATTCGACGATTTAGTACACTCCACACTGAAAGTA
TGGTTGTCAGATACAAGGAGCAAAGGTGAATCCACGAGCGAGGCTCGCAG
GATGGAGATAGTACCTACCATTCCTGAGTCTTTTAATGTCCAAATCAATG
AAGTTATGGAATGTGACAACCCTTAA

Coding sequence (CDS) from alignment at westarv0_A01:4186063..4188588-

>BnaA01T0060300WE ID=BnaA01T0060300WE|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=CDS|length=1476bp|location=Sequence derived from alignment at westarv0_A01:4186063..4188588- (Brassica napus Westar)
ATGGCAGAAGAGGAGAATTCACTTGAATATACACCCACATGGGTCGTAGC
GTTTATCTGTTTCATCATCGTTCTCTTGTCCCTGCTCGCTGAACGTGGTC
TTCATCATCTTGGAAAGTATCTGAAGCGTAAAAAACAAGATGCCTTGTTT
GAGGCCTTGCAGAAACTTAAAGAAGAACTGATGCTTTTGGGATTCATCTC
GCTAATGTTAACGGTATCTCAGACAGCAATCAGGCATATATGTGTCCCAC
CAGCTCTTGTTAGCAACATGTTCCCTTGTAAGAAGCCATTAGAGGAGGAG
CATCATGCTCCTGAAACATCTCATTCGCTTGTCTTCAATACACGACATTT
GCTTTCAACAGGAGCAAGTCCAGACCATTGTACTAACAAGGGGAAGGTTC
CTTTAATATCCGTTGAAGCGTTACATCATCTCCATATCTTTATATTCGTG
CTAGCGGTTGTTCACGTCATCTTCTGTGCTTCAACGATGGTTCTTGGAGG
AGCTAGGATACAACAATGGAAGCGTTGGGAGGATAATTTCAAGAAGATTC
CTTCTCAAAAAGATGCATCAAAGCCTGGTCATGCTCATGCTCATCATGCT
CATGCTCATGCACTTCACGAGTTATTTAACGCAAATCACGAGTTCTTCAA
GATGCATGCTGGAGGATTCTGGAGAAGATCTGTTGTCATCAGCTGGCTGA
GATCATTTTGCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATATATA
GCTCTGCGACATGGGTTCATCATGACCCATTGCCCCACAAACCCATCATT
TAATTTTCACAAGTACATGCTAAGAACAGTGGAGATGGATTTCAAGAAAG
TTGTGACCATAAGCTGGTATCTCTGGCTCTTTGTTGTCGTCTTTCTTCTG
CTGAATGTAGGAGGATGGAATACTTACTTCTGGTTGTCTTTCTTGCCTTT
AATATTGTTACTAATGGTGGGTGCGAAACTGGAGAATATAATAAGTAGCT
TAGCTGTGGATGTTTGTGAGAAGAGAAACCGTGGGGAACAAGCAGTAATC
ACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGAGATTGTTCTCCA
ACTCGTCCACTTCATTCTCTTTCAGAATTCATTTGAGATCGCTTTCTTCT
TCTGGATTTTGTTCACATATGGAATACATTCGTGTATCATGGAGAAACTA
GGCTTCCTTATTCCACGGCTTGTCATGGGAGTGTTAGTCCAAGTGCTTTG
CAGTTACAGCACATTGCCACTTTATGCTCTCGTTACACAAATGGGTAGCA
AGTTCAAGAAAGGGATATTCGACGATTTAGTACACTCCACACTGAAAGTA
TGGTTGTCAGATACAAGGAGCAAAGGTGAATCCACGAGCGAGGCTCGCAG
GATGGAGATAGTACCTACCATTCCTGAGTCTTTTAATGTCCAAATCAATG
AAGTTATGGAATGTGACAACCCTTAA