BnaA01T0055800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0055800WE
Unique Name	BnaA01T0055800WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0055800WE	BnaA01G0055800WE	Brassica napus Westar	gene	westarv0_A01 3924721..3926979 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0055800WE	BnaA01T0055800WE-P	Brassica napus Westar	polypeptide	westarv0_A01 3924744..3926836 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0055800WE.utr5p1	BnaA01T0055800WE.utr5p1	Brassica napus Westar	five_prime_UTR	westarv0_A01 3924721..3924743 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0055800WE.exon1	BnaA01T0055800WE.exon1	Brassica napus Westar	exon	westarv0_A01 3924721..3925079 +
BnaA01T0055800WE.exon2	BnaA01T0055800WE.exon2	Brassica napus Westar	exon	westarv0_A01 3925291..3925703 +
BnaA01T0055800WE.exon3	BnaA01T0055800WE.exon3	Brassica napus Westar	exon	westarv0_A01 3925782..3925887 +
BnaA01T0055800WE.exon4	BnaA01T0055800WE.exon4	Brassica napus Westar	exon	westarv0_A01 3925966..3926031 +
BnaA01T0055800WE.exon5	BnaA01T0055800WE.exon5	Brassica napus Westar	exon	westarv0_A01 3926121..3926291 +
BnaA01T0055800WE.exon6	BnaA01T0055800WE.exon6	Brassica napus Westar	exon	westarv0_A01 3926380..3926465 +
BnaA01T0055800WE.exon7	BnaA01T0055800WE.exon7	Brassica napus Westar	exon	westarv0_A01 3926551..3926635 +
BnaA01T0055800WE.exon8	BnaA01T0055800WE.exon8	Brassica napus Westar	exon	westarv0_A01 3926717..3926979 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0055800WE	cds.BnaA01T0055800WE	Brassica napus Westar	CDS	westarv0_A01 3924744..3925079 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0055800WE.utr3p1	BnaA01T0055800WE.utr3p1	Brassica napus Westar	three_prime_UTR	westarv0_A01 3926837..3926979 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:3924721..3926979+
coding sequence from alignment at westarv0_A01:3924721..3926979+

spliced messenger RNA

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=1549bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGACGTTTGCTTGTGGTCAATCTCTCACACAAGCTGAGCAAGA
AAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCCGGAGACGAAGA
GACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAAGGGATGAAGTG
AAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCGAACATTCTTGG
CGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCCTTACGAGGAGA
GGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTGCCAAGGAGAAG
CGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAGAAGCAGAAGAC
TGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCAGGAAGGTGAAC
AGGACATCAAGAAGAAGAGCAAGAAGGAGAAGGATCCTCTGAAGCCAAAG
CATCCCATATCTGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTT
ACGCGAAGAGAACAAGAACGTTGTAGAGGTCGCAAAGATGACCGGTGAAG
AGTGGAAGAAGCTGTCGGATAAAGAAAAAGCACCCTATGAAGAGGTGGCA
AAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAAGAGGAC
GAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGCTCTTGA
AACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAGAAAACC
GACAATCTGATCAAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAA
CGTTGACCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCA
GCAAAGACGTAAGGAAAGCTTTGACAGAAGAACGTCCAGGGACGAGCAAC
TCAACGGTCACCGCTCTAATCTCAGTGAAATGGAAGGAATTGGGTGAAGA
AGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATGGAAGCATACA
AGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGCTACGACCAGT
AGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAATGTTCAAGTCC
TGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTGAACTCAAAGT
GATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTACATTTTAATT

protein sequence of BnaA01T0055800WE

>BnaA01T0055800WE-P ID=BnaA01T0055800WE-P|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=polypeptide|length=461bp
MATSADPAPTKKSRNSRKALKQKNEIATTETPPSPVSAKAKSAKSFEKDL
MEMQAMMEKMKIEKDKTEELLKEKDEILRRKEEELVTRDAEQEKLKTELK
KLQKMKEFKPNMTFACGQSLTQAEQEKVNKKKKKKKDCPETKRPSSSYIL
WCKEQRDEVKKQNPEADFKETANILGAKWKSLSAEEKKPYEERYKVEKEA
YLQVIAKEKREREAMKLLDDEQKQKTAMDLLDQYLQFVQEGEQDIKKKSK
KEKDPLKPKHPISAFLVYANERRAALREENKNVVEVAKMTGEEWKKLSDK
EKAPYEEVAKKNKETYLQAMEEYKRTKEEEAMSQKKEEEELLKLHKQEAL
QLLKKKEKTDNLIKKEKETKKKKNENVDPNKPKKPASSFILFSKDVRKAL
TEERPGTSNSTVTALISVKWKELGEEEKQSYNNKAAKLMEAYKKELEDYN
KKSAAATTSS.

mRNA from alignment at westarv0_A01:3924721..3926979+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=2259bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGGTATACCTATCCTCTAGATCTAGATCTAGCCTTTACGTTTT
CGCTTCGGTTAGGTTTTGTGATTAGATTAGAGATTGATTCTACAAATACG
ATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCTAAAAATA
CGATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCAAGATT
GTTCTGTGTTGTTCTCTCAGACGTTTGCTTGTGGTCAATCTCTCACACAA
GCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCC
GGAGACGAAGAGACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAA
GGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCG
AACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCC
TTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTG
CCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAG
AAGCAGAAGACTGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCA
GGAAGGTGAACAGGACATCAAGAAGAAGAGCAAGTGAGATATACCTACTG
ATGAATATACCAATTGCTCATCAAATGGTTGAACTGATTAGAGATGTTGT
TTGGTTTGCAGGAAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATC
TGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGA
ACAAGAACGTTGTAGAGGTATATCTCAAGTACTTTCTCTCAAGATCCATT
TTTTTTGCTAAATGTTGAATTTAACTTGTGGAGCGGTGGTTATAGGTCGC
AAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAAGAAAAAGCAC
CCTATGAAGAGGTTTGTGTTTCTTATATATATATGTTTGCATTCATAGCT
ATATAAAGACTTGGAGAGTGAATGAATTTTTGAGGTGTGATATTAAACAG
GTGGCAAAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAA
GAGGACGAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGC
TCTTGAAACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAG
AAAACCGACAATCTGATCAAGGTCATTCACTCACTCATACTTTTCCTTGT
CTCGCCTAAATGAATTTACAACTCAGAGACTAATGGTATCAAGATAATTT
ATATTGCAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAACGTTGA
CCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCAGGTACC
AACTTAAACTAAATGTGACTCAAGAGTATCCTGAACTTAATGCATTTCTA
ACTGTTTAAAAAAAAAACTTATGTCCACAGCAAAGACGTAAGGAAAGCTT
TGACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATC
TCAGTGAAATGGAAGGTATGTTAATTCACAACTCTACCTTTAATAACTCA
TTTGCTATAAACATATATCTCTCGTCTAAGTAAAATTACATTGCAGGAAT
TGGGTGAAGAAGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATG
GAAGCATACAAGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGC
TACGACCAGTAGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAAT
GTTCAAGTCCTGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTG
AACTCAAAGTGATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTAC
ATTTTAATT

Coding sequence (CDS) from alignment at westarv0_A01:3924721..3926979+

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=CDS|length=1383bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
ATGGCCACCAGCGCAGATCCAGCTCCGACGAAGAAATCGAGGAACAGCCG
CAAGGCGTTGAAGCAGAAGAACGAGATCGCGACGACGGAGACTCCGCCGT
CCCCAGTCTCCGCCAAGGCGAAATCGGCGAAGTCGTTCGAGAAAGATCTG
ATGGAGATGCAGGCGATGATGGAGAAGATGAAGATCGAGAAGGATAAGAC
GGAGGAGTTGCTTAAGGAGAAGGACGAGATTCTGAGGAGGAAGGAGGAGG
AGCTTGTGACGAGAGACGCTGAGCAGGAGAAGCTCAAGACGGAGCTCAAG
AAGCTTCAGAAGATGAAGGAGTTCAAACCTAACATGACGTTTGCTTGTGG
TCAATCTCTCACACAAGCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGA
AGAAGAAGGATTGTCCGGAGACGAAGAGACCGTCGTCATCATACATACTG
TGGTGCAAGGAGCAAAGGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGA
CTTCAAGGAGACTGCGAACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTG
CGGAAGAGAAGAAGCCTTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCT
TACCTCCAGGTGATTGCCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCT
TCTGGATGATGAGCAGAAGCAGAAGACTGCTATGGATTTGCTTGATCAGT
ATCTCCAGTTTGTGCAGGAAGGTGAACAGGACATCAAGAAGAAGAGCAAG
AAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATCTGCCTTCCTGGT
TTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGAACAAGAACGTTG
TAGAGGTCGCAAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAA
GAAAAAGCACCCTATGAAGAGGTGGCAAAGAAGAACAAGGAGACATACCT
GCAAGCAATGGAGGAGTACAAGAGGACGAAGGAAGAAGAGGCCATGAGCC
AGAAGAAAGAAGAAGAGGAGCTCTTGAAACTCCACAAACAGGAAGCTCTC
CAACTGCTTAAGAAGAAGGAGAAAACCGACAATCTGATCAAGAAGGAGAA
AGAGACCAAGAAGAAGAAGAACGAAAACGTTGACCCAAACAAACCCAAGA
AGCCTGCTTCCTCATTCATCCTCTTCAGCAAAGACGTAAGGAAAGCTTTG
ACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATCTC
AGTGAAATGGAAGGAATTGGGTGAAGAAGAAAAGCAAAGTTACAACAACA
AAGCAGCAAAGTTGATGGAAGCATACAAGAAGGAACTTGAAGATTACAAC
AAGAAGAGTGCTGCGGCTACGACCAGTAGTTAG