Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BnaA01G0040100WE | BnaA01G0040100WE | Brassica napus Westar | gene | westarv0_A01 2507846..2509617 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0040100WE.1.exon3 | BnaA01T0040100WE.1.exon3 | Brassica napus Westar | exon | westarv0_A01 2507846..2509192 - |
BnaA01T0040100WE.1.exon2 | BnaA01T0040100WE.1.exon2 | Brassica napus Westar | exon | westarv0_A01 2509279..2509440 - |
BnaA01T0040100WE.1.exon1 | BnaA01T0040100WE.1.exon1 | Brassica napus Westar | exon | westarv0_A01 2509535..2509617 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0040100WE.1.utr3p1 | BnaA01T0040100WE.1.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 2507846..2508026 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BnaA01T0040100WE.1 | cds.BnaA01T0040100WE.1 | Brassica napus Westar | CDS | westarv0_A01 2509535..2509613 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0040100WE.1.utr5p1 | BnaA01T0040100WE.1.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 2509614..2509617 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0040100WE.1 ID=BnaA01T0040100WE.1|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=mRNA|length=1592bp|location=Sequence derived from alignment at westarv0_A01:2507846..2509617- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
TGAAATGGCACTAGCGATCAACGTTTCCTCATCTTCTTCTTCTGCGATCT CAACCTCTAGCTTCCCTTCCTCAGAGCTCAAAGCTCCACGGATCGGTTCA CTGAGGTTATCCGATCGTGTCAATGTCTCATCGGCGTCTCTGAGTCTATC CGGGAAACGATCATCATCGGTGAAGCCTCTGAATGTTCAGTCAATTGCAA AGGAGTCGTTTGTTCCTTCTCAAGCAGCGTCCATGGTGACTTCTGAGGTT ACAGAGAAACTAGATGTGGTGGAAGTGGAAGACTTCGAGGAGCTAGCAAA GAGTCTAGAGACCGCTTCTCCTCTTGAGATCATGGACAAGGCTCTTGAGA AGTTCGGAAACGACATCGCAATCGCATTTAGTGGAGCAGAAGACGTTGCT CTCATTGAGTACGCTCACTTAACCGGAAGACCCTTCAGGGTGTTTAGTTT AGACACAGGGAGATTGAACCCCGAAACATACAGACTCTTCGACACCGTGG AGAAGCACTACGGTATTCGAATCGAGTACATGTTTCCCGACGCTGTTGAG GTCCAAGCTTTGGTTAGAAACAAAGGTTTGTTCTCTTTCTACGAAGACGG TCACCAGGAGTGTTGCCGCATCAGAAAGGTTAGACCATTGAGGCGTGCGT TGAAGGGCTTACGCGCTTGGATCACCGGACAAAGGAAAGATCAGTCACCA GGGACGAGATCAGAGATCCCCGTTGTTCAAGTTGATCCGGTGTTTGAAGG GTTAGACGGTGGAGCTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATG TCGAAGGGAACGATGTTTGGAACTTCTTGAGGACTATGGATGTGCCCGTG AACACGCTTCACGCTGCGGGGTATGTTTCTATAGGATGTGAGCCGTGCAC GAGAGCGGTTTTGCCTGGGCAGCACGAGAGAGAAGGGAGATGGTGGTGGG AAGACGCTAAGGCTAAAGAGTGTGGACTTCACAAAGGGAACATCAAGGAG AACAGCAACGGGAACGCTAATGCTAATGTCAATGGGACGTCATCCACGGT TGCTGATATCTTCAAGAGCGAGAATGTTGTGAGCTTGAGCAGGCAAGGGA TTGAGAATCTGATGAAGCTGGAGAATCGTAAAGAGGCTTGGATCGTTGTG CTTTATGCTCCTTGGTGCCCGTTTTGCCAAGCGATGGAAGGTTCGTTTGA TGAGTTGGCGGATAAGTTGGGCGGGAGTGGCGTGAAGGTGGCGAAGTTTA GAGCTGATGGTGACCAGAAGGAGTTTGCTAAAAGGGAGTTGCAGCTTGGG AGCTTCCCGACGATACTAGTGTTCCCGAAGAACTCTTCAAGACCAATCAA GTATCCGTCAGAGAAGAGAGATGTTGATTCTTTGACATCGTTCTTGAATC TTGTTCGGTAAAAAGAGCAAAAAATCAGTCGACTTTGCAAAACAAAATCA TTCAGTCTAGTTCTAGAATGCTAGAACAGATGAAGTAAGAGCTTGAGATT CTCTATTTGAAAGCTTTTGACTTTTGTATAGTTGTGGTCTGTCCTTTTGT AAAACATTTGCCTTTGTGATGATATGAGCAAGTTTTCAAACA back to topprotein sequence of BnaA01T0040100WE.1 >BnaA01T0040100WE.1-P ID=BnaA01T0040100WE.1-P|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=polypeptide|length=469bp
MALAINVSSSSSSAISTSSFPSSELKAPRIGSLRLSDRVNVSSASLSLSG KRSSSVKPLNVQSIAKESFVPSQAASMVTSEVTEKLDVVEVEDFEELAKS LETASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLD TGRLNPETYRLFDTVEKHYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGH QECCRIRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL DGGAGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAGYVSIGCEPCTR AVLPGQHEREGRWWWEDAKAKECGLHKGNIKENSNGNANANVNGTSSTVA DIFKSENVVSLSRQGIENLMKLENRKEAWIVVLYAPWCPFCQAMEGSFDE LADKLGGSGVKVAKFRADGDQKEFAKRELQLGSFPTILVFPKNSSRPIKY PSEKRDVDSLTSFLNLVR. back to topmRNA from alignment at westarv0_A01:2507846..2509617- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0040100WE.1 ID=BnaA01T0040100WE.1|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=mRNA|length=1772bp|location=Sequence derived from alignment at westarv0_A01:2507846..2509617- (Brassica napus Westar) TGAAATGGCACTAGCGATCAACGTTTCCTCATCTTCTTCTTCTGCGATCT
CAACCTCTAGCTTCCCTTCCTCAGAGCTCAAAGGTAATTTTAAAAATTGC
TTGATGGATCTTTGTGAATTGGTTCAAAATTCGAAACTAATTCGAACCCG
GTTTTGTGTTTTATTCCTCAGTTTCAGCTCCACGGATCGGTTCACTGAGG
TTATCCGATCGTGTCAATGTCTCATCGGCGTCTCTGAGTCTATCCGGGAA
ACGATCATCATCGGTGAAGCCTCTGAATGTTCAGTCAATTGCAAAGGAGT
CGTTTGTTCCTTCTCAAGCAGCGTCCATGGTGACTTCTGGTAAGTTCTGT
TTAATTAGGATCTTGGTTTAGTTTTTTTTTGTTGGTTAAGTTTAAGCTAA
TGATCTCGTTGGCTTTACAAAACAGAGGTTACAGAGAAACTAGATGTGGT
GGAAGTGGAAGACTTCGAGGAGCTAGCAAAGAGTCTAGAGACCGCTTCTC
CTCTTGAGATCATGGACAAGGCTCTTGAGAAGTTCGGAAACGACATCGCA
ATCGCATTTAGTGGAGCAGAAGACGTTGCTCTCATTGAGTACGCTCACTT
AACCGGAAGACCCTTCAGGGTGTTTAGTTTAGACACAGGGAGATTGAACC
CCGAAACATACAGACTCTTCGACACCGTGGAGAAGCACTACGGTATTCGA
ATCGAGTACATGTTTCCCGACGCTGTTGAGGTCCAAGCTTTGGTTAGAAA
CAAAGGTTTGTTCTCTTTCTACGAAGACGGTCACCAGGAGTGTTGCCGCA
TCAGAAAGGTTAGACCATTGAGGCGTGCGTTGAAGGGCTTACGCGCTTGG
ATCACCGGACAAAGGAAAGATCAGTCACCAGGGACGAGATCAGAGATCCC
CGTTGTTCAAGTTGATCCGGTGTTTGAAGGGTTAGACGGTGGAGCTGGTA
GTTTGGTGAAGTGGAATCCGGTTGCGAATGTCGAAGGGAACGATGTTTGG
AACTTCTTGAGGACTATGGATGTGCCCGTGAACACGCTTCACGCTGCGGG
GTATGTTTCTATAGGATGTGAGCCGTGCACGAGAGCGGTTTTGCCTGGGC
AGCACGAGAGAGAAGGGAGATGGTGGTGGGAAGACGCTAAGGCTAAAGAG
TGTGGACTTCACAAAGGGAACATCAAGGAGAACAGCAACGGGAACGCTAA
TGCTAATGTCAATGGGACGTCATCCACGGTTGCTGATATCTTCAAGAGCG
AGAATGTTGTGAGCTTGAGCAGGCAAGGGATTGAGAATCTGATGAAGCTG
GAGAATCGTAAAGAGGCTTGGATCGTTGTGCTTTATGCTCCTTGGTGCCC
GTTTTGCCAAGCGATGGAAGGTTCGTTTGATGAGTTGGCGGATAAGTTGG
GCGGGAGTGGCGTGAAGGTGGCGAAGTTTAGAGCTGATGGTGACCAGAAG
GAGTTTGCTAAAAGGGAGTTGCAGCTTGGGAGCTTCCCGACGATACTAGT
GTTCCCGAAGAACTCTTCAAGACCAATCAAGTATCCGTCAGAGAAGAGAG
ATGTTGATTCTTTGACATCGTTCTTGAATCTTGTTCGGTAAAAAGAGCAA
AAAATCAGTCGACTTTGCAAAACAAAATCATTCAGTCTAGTTCTAGAATG
CTAGAACAGATGAAGTAAGAGCTTGAGATTCTCTATTTGAAAGCTTTTGA
CTTTTGTATAGTTGTGGTCTGTCCTTTTGTAAAACATTTGCCTTTGTGAT
GATATGAGCAAGTTTTCAAACA back to topCoding sequence (CDS) from alignment at westarv0_A01:2507846..2509617- >BnaA01T0040100WE.1 ID=BnaA01T0040100WE.1|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=CDS|length=1407bp|location=Sequence derived from alignment at westarv0_A01:2507846..2509617- (Brassica napus Westar) ATGGCACTAGCGATCAACGTTTCCTCATCTTCTTCTTCTGCGATCTCAAC CTCTAGCTTCCCTTCCTCAGAGCTCAAAGCTCCACGGATCGGTTCACTGA GGTTATCCGATCGTGTCAATGTCTCATCGGCGTCTCTGAGTCTATCCGGG AAACGATCATCATCGGTGAAGCCTCTGAATGTTCAGTCAATTGCAAAGGA GTCGTTTGTTCCTTCTCAAGCAGCGTCCATGGTGACTTCTGAGGTTACAG AGAAACTAGATGTGGTGGAAGTGGAAGACTTCGAGGAGCTAGCAAAGAGT CTAGAGACCGCTTCTCCTCTTGAGATCATGGACAAGGCTCTTGAGAAGTT CGGAAACGACATCGCAATCGCATTTAGTGGAGCAGAAGACGTTGCTCTCA TTGAGTACGCTCACTTAACCGGAAGACCCTTCAGGGTGTTTAGTTTAGAC ACAGGGAGATTGAACCCCGAAACATACAGACTCTTCGACACCGTGGAGAA GCACTACGGTATTCGAATCGAGTACATGTTTCCCGACGCTGTTGAGGTCC AAGCTTTGGTTAGAAACAAAGGTTTGTTCTCTTTCTACGAAGACGGTCAC CAGGAGTGTTGCCGCATCAGAAAGGTTAGACCATTGAGGCGTGCGTTGAA GGGCTTACGCGCTTGGATCACCGGACAAAGGAAAGATCAGTCACCAGGGA CGAGATCAGAGATCCCCGTTGTTCAAGTTGATCCGGTGTTTGAAGGGTTA GACGGTGGAGCTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTCGA AGGGAACGATGTTTGGAACTTCTTGAGGACTATGGATGTGCCCGTGAACA CGCTTCACGCTGCGGGGTATGTTTCTATAGGATGTGAGCCGTGCACGAGA GCGGTTTTGCCTGGGCAGCACGAGAGAGAAGGGAGATGGTGGTGGGAAGA CGCTAAGGCTAAAGAGTGTGGACTTCACAAAGGGAACATCAAGGAGAACA GCAACGGGAACGCTAATGCTAATGTCAATGGGACGTCATCCACGGTTGCT GATATCTTCAAGAGCGAGAATGTTGTGAGCTTGAGCAGGCAAGGGATTGA GAATCTGATGAAGCTGGAGAATCGTAAAGAGGCTTGGATCGTTGTGCTTT ATGCTCCTTGGTGCCCGTTTTGCCAAGCGATGGAAGGTTCGTTTGATGAG TTGGCGGATAAGTTGGGCGGGAGTGGCGTGAAGGTGGCGAAGTTTAGAGC TGATGGTGACCAGAAGGAGTTTGCTAAAAGGGAGTTGCAGCTTGGGAGCT TCCCGACGATACTAGTGTTCCCGAAGAACTCTTCAAGACCAATCAAGTAT CCGTCAGAGAAGAGAGATGTTGATTCTTTGACATCGTTCTTGAATCTTGT TCGGTAA back to top
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