Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0037700WE | BnaA01G0037700WE | Brassica napus Westar | gene | westarv0_A01 2364577..2366045 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0037700WE.exon1 | BnaA01T0037700WE.exon1 | Brassica napus Westar | exon | westarv0_A01 2364577..2364652 + |
| BnaA01T0037700WE.exon2 | BnaA01T0037700WE.exon2 | Brassica napus Westar | exon | westarv0_A01 2365328..2365381 + |
| BnaA01T0037700WE.exon3 | BnaA01T0037700WE.exon3 | Brassica napus Westar | exon | westarv0_A01 2365599..2365702 + |
| BnaA01T0037700WE.exon4 | BnaA01T0037700WE.exon4 | Brassica napus Westar | exon | westarv0_A01 2365783..2365821 + |
| BnaA01T0037700WE.exon5 | BnaA01T0037700WE.exon5 | Brassica napus Westar | exon | westarv0_A01 2365908..2366045 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0037700WE | cds.BnaA01T0037700WE | Brassica napus Westar | CDS | westarv0_A01 2364577..2364652 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0037700WE ID=BnaA01T0037700WE|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=mRNA|length=411bp|location=Sequence derived from alignment at westarv0_A01:2364577..2366045+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA
GTACGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAGAAGGGAT
GTGATGCCGACAGTGACTCATGGGAAGATTGTGTATCAGACTGCAGTGAG
ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATATAT
AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT
GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGGATCTGAGGAAGTCGAT
AAGGTGAAACCAAAAAGACCACCGCCACCACCACCAAAGCCACAGCCACC
ACCAAGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGTTCCTGGAA
CTTCAGCTTGA back to topprotein sequence of BnaA01T0037700WE >BnaA01T0037700WE-P ID=BnaA01T0037700WE-P|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=polypeptide|length=137bp
MIPQQWTPPCGSQCTHKYAALTQIPWRVFCKKGCDADSDSWEDCVSDCSE
ICYKDPVLKDRQWSAYIDRSPGAASYSEECFHACVAGCGYKFEVGSEEVD
KVKPKRPPPPPPKPQPPPRAKGPKQPPSEEVPGTSA. back to topmRNA from alignment at westarv0_A01:2364577..2366045+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0037700WE ID=BnaA01T0037700WE|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=mRNA|length=1469bp|location=Sequence derived from alignment at westarv0_A01:2364577..2366045+ (Brassica napus Westar)
ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA
GTACGCAGCTCTTACGCAGATTCCATGTATGTATTCTCTCTCGATTCGTT
TGATGTTGACTCGATCCGTAATGGCTCACTCAGATTTATCTTCTTTAGCT
CGTTTGTTTTAGTTTCTCGATGATAAGAATCGTGCTTCGGCGAATTTGTA
TTCAAGCAGGTAAAATTGTTGATTGTTGATAAGGTTTCTCGTATTCTGAG
GGTTTCTTCATTTTTATTTGGAATTGAATTGTGAAACTGTGACTTGATAA
TTTAGGTTTCAGTGTTCTTTGTATATAAACCCTAATCTACTGTCAGCGAG
TCTTGCTACTTCACTAAACATTGGGAGAACGATCACTTACTTGCTTGCTT
CTTGGCTAACACTGTAAACTGTAGAAGATGGCATATCTCGCTACCCAATA
TAAGTAACCATAGGAGAAAGAGGAAAATAAGAACAACTGTAGTGAAGATG
CTTTTGCTTCTCTGAACTTATAAACAGATAGATATGTATATGCGTTAGCT
AGTAATAGGGCTTCGTTTTGCTGTTTCTGATACAATCTTTTTTCATTTTC
TTGATCTCTCAATTCCATTTATGATCACAAAAGCTAGATGAATTTCATAT
TTATCTTCCGTGTTGATATATTACACGATTCTAGCAATTTGTTATTTTGT
TGTTCTCTTTGGCTTTATCATCAGTCTAATGATAATAATGAATCCGTGTA
GGGAGAGTGTTCTGCAAGAAGGGATGTGATGCCGACAGTGACTCATGGGA
AGATTGTAAGCATTTCTTTTTAATCACTCAAGTCCATCATGAGATTTGTT
TATGAATTGAGGAGCAGATTCATCTCTCCTCACTCCTCACTCCTCACTAT
ACAACATTACAGAAAATTCTTGTCTCCTACATTGTATATATGTGTGTTCA
TGAAGTATCTCCTCTTCTTCAGGTTTTGATTTTGCAAGTTAATGAATTGG
TGTGATAGTGTTCTCTTTATAGGTGTATCAGACTGCAGTGAGATATGCTA
CAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATATATAGATCGTT
CTCCTGGAGCTGCCAGCTACTCTGAGGTATCCACACTACATTAAAAAGAA
TACCCTTTTCATAAACAGACCGACGTATCTAACTTGTTTTATATTGTAAA
ATTCAGGAATGCTTTCACGCGTGTGTCGCAGGCTGTGGTTACAAGGTTTG
GTACTCTTGTTTCAATCTTCATTTTGATGCCTTTGCAGTATATTTTTCTT
CTTCTTAGCTCGTGTTTGCTGCATCATGCAGTTTGAAGTTGGATCTGAGG
AAGTCGATAAGGTGAAACCAAAAAGACCACCGCCACCACCACCAAAGCCA
CAGCCACCACCAAGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGT
TCCTGGAACTTCAGCTTGA back to topCoding sequence (CDS) from alignment at westarv0_A01:2364577..2366045+ >BnaA01T0037700WE ID=BnaA01T0037700WE|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=CDS|length=411bp|location=Sequence derived from alignment at westarv0_A01:2364577..2366045+ (Brassica napus Westar)
ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA
GTACGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAGAAGGGAT
GTGATGCCGACAGTGACTCATGGGAAGATTGTGTATCAGACTGCAGTGAG
ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATATAT
AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT
GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGGATCTGAGGAAGTCGAT
AAGGTGAAACCAAAAAGACCACCGCCACCACCACCAAAGCCACAGCCACC
ACCAAGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGTTCCTGGAA
CTTCAGCTTGA back to top
|