Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0033900WE | BnaA01G0033900WE | Brassica napus Westar | gene | westarv0_A01 2154371..2156258 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0033900WE.exon3 | BnaA01T0033900WE.exon3 | Brassica napus Westar | exon | westarv0_A01 2154371..2154654 - |
| BnaA01T0033900WE.exon2 | BnaA01T0033900WE.exon2 | Brassica napus Westar | exon | westarv0_A01 2155732..2156123 - |
| BnaA01T0033900WE.exon1 | BnaA01T0033900WE.exon1 | Brassica napus Westar | exon | westarv0_A01 2156182..2156258 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0033900WE | cds.BnaA01T0033900WE | Brassica napus Westar | CDS | westarv0_A01 2156182..2156258 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0033900WE ID=BnaA01T0033900WE|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=mRNA|length=753bp|location=Sequence derived from alignment at westarv0_A01:2154371..2156258- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGAGGAGATCTCAAACCAAATCAAGATTGCATCAATTGCATAACAA
ACGCAGCCAAACAGCTCTTAGAAAGCTTCGAACCATATTAGGTGAAATGG
AGCCAGTTCCCTTATATCACATATTAAGCAACGTTAGCGTGATGGACAAG
GAAGGTTTCAGCAAGGGTTTAGGTGAACTATTGGATTCATTAGGGTCAAA
GATAGTGGATGCGTATGAGACCTCAGCAAGAGTGAAAGGGACAGTCTACG
CGTTGGCTCAGTGTATACCAGATTTGTCTAAATCAGATTGTAGAATTTGT
CTTTCACAGATCTTTGCTGGAGTGCCTACTTGTTGTGATGGCAAGTCAGG
TGGATGGTGGAACAATCCAAGTTGCTATTTTAGGTTTGAAAATTATCTGT
TTTTCGATCTCTCTGTTGTTTCAGAAGAGAAACAACCTCTTTCTCCTCCT
AAGAATGACACCAAAATAAGCATGGAAAAATTGGTTGAAGGAACAGCAGT
GGACCTAATAGTTCATGTTCTTTTGAAATCTTACTCTAAGGAACAATCAA
TGCAATGCCTAGAAATTGCTTTCTCTTGTGTTCAAGAAAATCCTACAAAA
AGACCAACAATGGATTCAGTTGTTTCCATGCTTAGCTCTGATTCTGAGCC
TCTCCGACTCCCAAAGCCATCACAGCCTGGTTTCTTCAGAAGATCAATGT
CGTTTTCGGTTTCTGTTAATGATGTTTCTCTCACAGATTTGTCTGGACGT
TAA back to topprotein sequence of BnaA01T0033900WE >BnaA01T0033900WE-P ID=BnaA01T0033900WE-P|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=polypeptide|length=251bp
MQRRSQTKSRLHQLHNKRSQTALRKLRTILGEMEPVPLYHILSNVSVMDK
EGFSKGLGELLDSLGSKIVDAYETSARVKGTVYALAQCIPDLSKSDCRIC
LSQIFAGVPTCCDGKSGGWWNNPSCYFRFENYLFFDLSVVSEEKQPLSPP
KNDTKISMEKLVEGTAVDLIVHVLLKSYSKEQSMQCLEIAFSCVQENPTK
RPTMDSVVSMLSSDSEPLRLPKPSQPGFFRRSMSFSVSVNDVSLTDLSGR
. back to topmRNA from alignment at westarv0_A01:2154371..2156258- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0033900WE ID=BnaA01T0033900WE|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=mRNA|length=1888bp|location=Sequence derived from alignment at westarv0_A01:2154371..2156258- (Brassica napus Westar)
ATGCAGAGGAGATCTCAAACCAAATCAAGATTGCATCAATTGCATAACAA
ACGCAGCCAAACAGCTCTTAGAAAGCTGTCCAAACATCGTGGAAGCCGAC
ATATAGCTGGAAAAATGCATGTTTCGTTACACAAGTCGAACCATATTAGG
TGAAATGGAGCCAGTTCCCTTATATCACATATTAAGCAACGTTAGCGTGA
TGGACAAGGAAGGTTTCAGCAAGGGTTTAGGTGAACTATTGGATTCATTA
GGGTCAAAGATAGTGGATGCGTATGAGACCTCAGCAAGAGTGAAAGGGAC
AGTCTACGCGTTGGCTCAGTGTATACCAGATTTGTCTAAATCAGATTGTA
GAATTTGTCTTTCACAGATCTTTGCTGGAGTGCCTACTTGTTGTGATGGC
AAGTCAGGTGGATGGTGGAACAATCCAAGTTGCTATTTTAGGTTTGAAAA
TTATCTGTTTTTCGATCTCTCTGTTGTTTCAGAAGAGAAACAACCTCTTT
CTCCTCCTAAGAATGACACCAAAATAAGTGATTAAGGTAAAACAAGTTAA
GCTGATGTCATGAAAAGAATTAGATGTTTAGGGTTTACCTTTTGATTCTA
TGCTGTTACTTGCAGTAAACGGTTCTAAAACTCTGGTATTTGCCGTGATT
CCCATTGTGACAATTGTCTTAGTTCTTATCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTTTATCTACTTAATGAGGAGGAAGAAAAATCTAAAGGAAGAAGC
TGAAAGTAAGTTTGTGAAGCCTAACTGACTATTCTTTAACCCTATTATTG
ATCTCCTTCTTACTAGTTACTTGTCCCGCAAGCGAATTTCAATCTGCAGA
TGAGATTGAGAGTACATACTCATTGCATTTTGATTTTGACACCATAAGAG
TAGCAACAGATGATTTCTCTTTAACGACTAAGATTGGTGAAGGCGGTTTT
GGGGCTGTCTACAAGGTTGATTCATCTTTACTATAATCTTCATTCCTCCG
TTTCCAATCTCCATATTAACAAAGCGGCATTGCCTTGTCCTCATCATAGG
AATCTCCCGGGGGTTGCTTTACCTTCACCAAGTCACAGAGTTTTCGATAA
TTCACCGTGTTCTCAAATCCTCCAATGTGCATTTAGATGAACAAATGCAT
CCAAAAATCTCAGATTTTGGAATGGCAAGACAATTTGATTTTTATAAGAC
TCAAGCAACAACAAAAAGAGTTGTTGGAACTTAGTATGTCTAGTTACTCA
AAACCAATCCAGCTAACAAAAGAAGACAAAAAAAAATCAATCTCTCATCT
TTCTTGTTTTTGTTGTGGATATATGGCTCCAGAGTATGCAATGCATGGTA
GATTCTCTGCCAAAACAGATGTTTACAGCTTTGGAGTTCTTGTTCTAGAG
ATCATTACAGGTAAAAGAAACAGTGGCTTAGGGTTTAGTGAAGACACAGA
TCTCCCAACTTTCGTAAGTGCCAAGAAACACACAAATAAGGAACAACAAA
ATCAAACAAAAAAGTGATTTATTCAGTAATGTTATGTCTCTATTTCGTCT
GCAGGCATGGAAAAATTGGTTGAAGGAACAGCAGTGGACCTAATAGTTCA
TGTTCTTTTGAAATCTTACTCTAAGGAACAATCAATGCAATGCCTAGAAA
TTGCTTTCTCTTGTGTTCAAGAAAATCCTACAAAAAGACCAACAATGGAT
TCAGTTGTTTCCATGCTTAGCTCTGATTCTGAGCCTCTCCGACTCCCAAA
GCCATCACAGCCTGGTTTCTTCAGAAGATCAATGTCGTTTTCGGTTTCTG
TTAATGATGTTTCTCTCACAGATTTGTCTGGACGTTAA back to topCoding sequence (CDS) from alignment at westarv0_A01:2154371..2156258- >BnaA01T0033900WE ID=BnaA01T0033900WE|Name=BnaA01T0033900WE|organism=Brassica napus Westar|type=CDS|length=753bp|location=Sequence derived from alignment at westarv0_A01:2154371..2156258- (Brassica napus Westar)
ATGCAGAGGAGATCTCAAACCAAATCAAGATTGCATCAATTGCATAACAA
ACGCAGCCAAACAGCTCTTAGAAAGCTTCGAACCATATTAGGTGAAATGG
AGCCAGTTCCCTTATATCACATATTAAGCAACGTTAGCGTGATGGACAAG
GAAGGTTTCAGCAAGGGTTTAGGTGAACTATTGGATTCATTAGGGTCAAA
GATAGTGGATGCGTATGAGACCTCAGCAAGAGTGAAAGGGACAGTCTACG
CGTTGGCTCAGTGTATACCAGATTTGTCTAAATCAGATTGTAGAATTTGT
CTTTCACAGATCTTTGCTGGAGTGCCTACTTGTTGTGATGGCAAGTCAGG
TGGATGGTGGAACAATCCAAGTTGCTATTTTAGGTTTGAAAATTATCTGT
TTTTCGATCTCTCTGTTGTTTCAGAAGAGAAACAACCTCTTTCTCCTCCT
AAGAATGACACCAAAATAAGCATGGAAAAATTGGTTGAAGGAACAGCAGT
GGACCTAATAGTTCATGTTCTTTTGAAATCTTACTCTAAGGAACAATCAA
TGCAATGCCTAGAAATTGCTTTCTCTTGTGTTCAAGAAAATCCTACAAAA
AGACCAACAATGGATTCAGTTGTTTCCATGCTTAGCTCTGATTCTGAGCC
TCTCCGACTCCCAAAGCCATCACAGCCTGGTTTCTTCAGAAGATCAATGT
CGTTTTCGGTTTCTGTTAATGATGTTTCTCTCACAGATTTGTCTGGACGT
TAA back to top
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