Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0026500WE | BnaA01G0026500WE | Brassica napus Westar | gene | westarv0_A01 1749755..1752242 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0026500WE.exon1 | BnaA01T0026500WE.exon1 | Brassica napus Westar | exon | westarv0_A01 1749755..1750015 + |
| BnaA01T0026500WE.exon2 | BnaA01T0026500WE.exon2 | Brassica napus Westar | exon | westarv0_A01 1750553..1750930 + |
| BnaA01T0026500WE.exon3 | BnaA01T0026500WE.exon3 | Brassica napus Westar | exon | westarv0_A01 1751763..1752242 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0026500WE | cds.BnaA01T0026500WE | Brassica napus Westar | CDS | westarv0_A01 1749755..1750015 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=mRNA|length=1119bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTA
CTGATGAATGCGGCTATGGAGGATAACACGGTGATCATCACGGCGTTAAA
CGAAGCATGGGTCAAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTT
TCAAAGCCGGTATAGGAACAGAGATACTATTGAAACACGTGATCGCGGTT
TGCTTGGATAAGCATGCATACGATCGGTGCATAGAGGTTCATCCTCATTG
CTACTTGATTAACGCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGT
TTATGACGCCTGGTTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTT
AAGGAAGTTCTTGGATTAGGATACAACTTCATCTTCACGGATGCAGATAT
CTTGTGGCTTAGAGACCCATTTCCCCGGTTCTTCCGAGACGCCGACTTTC
AGATAACATGCGATGATTACAATGGAAAGCCATCAGACAAGAATAACCAC
GTGAACTCCGGATTCACATACGTCAAAGCAAACAGCAGAACGTTGAACTT
TTACAAGTTCTGGATCAGATCGAGTCGAAAGTTCCCTGGAAAACACGATC
AAGATGTGTTCAACCTCATAAAAAACAAACAGTTTGTCTTGAAACTTGGA
ATCAACATTAGGTTTCTTGACACGGTTTACTTTGGAGGGTTTTGCCAGCC
GAGCAGGGACATCAACGTGGTTAACACAATGCATGCTAATTGTTGTATTG
GTTTGGACAACAAAGTGAATAATCTAAAGGCTGCTCTTGAAGACTGGAAA
CGATATGTATCGTTGAATACGACCGTGTCTGAGACTAAATGGAATATTCC
ACCGAAGTGTGGTTATTAA back to topprotein sequence of BnaA01T0026500WE >BnaA01T0026500WE-P ID=BnaA01T0026500WE-P|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=polypeptide|length=373bp
MESTKGESSTLGYKFGGVSIDDGKSKPVISTDGLFGRRDMIKVVLLVTTV
TLSCLLFYKSANNPLNVVSLWKTDCYSSKTINETSLTVQKREPVSELERV
LMNAAMEDNTVIITALNEAWVKPNSTFDVFRESFKAGIGTEILLKHVIAV
CLDKHAYDRCIEVHPHCYLINATDSDQLSGPNRFMTPGYLKLIWRRMDLL
KEVLGLGYNFIFTDADILWLRDPFPRFFRDADFQITCDDYNGKPSDKNNH
VNSGFTYVKANSRTLNFYKFWIRSSRKFPGKHDQDVFNLIKNKQFVLKLG
INIRFLDTVYFGGFCQPSRDINVVNTMHANCCIGLDNKVNNLKAALEDWK
RYVSLNTTVSETKWNIPPKCGY. back to topmRNA from alignment at westarv0_A01:1749755..1752242+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=mRNA|length=2488bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGAGTATATTACATATGTTCATTGATAATTTAAATACT
TCAATATAGTTTGAAGATTGATATGAGTTACGAATCCAATGAATTGTTGC
TATTTTATTGTTAGAAGAACTTTACGGAGATATACTTGCACATATTTTGT
TTACTGTCATCAGGAAAGTTAATATTTACGTAGATTTCTTATTGATAAAT
GAGTAAATGCTCTATTTTCATGTTTGTAGCGAACTTGTTAATGATGATTT
TCCAAACCGATTTTTAGTATTGAACCATAAACATTTAATGAGAATTACAC
TACCAGACATTTTTTTGTTGTTGATATGTTAATCTTAACCAGTATTTTGA
AAAACTGTACAGGCTGCGCCTAGACACTCATCTATGTGACAAATTGATCA
TAAGCAAACTAATTTTTCTATAACGATTTTTTAAAAAAAATCAATCTAGA
CAGAGACTTTTATGTACACCTAATGATTTTTTTTTCACCTAATGATTTTT
TTTTTCACCTAATGATTCTTGAAACATTGATCTCAACTATATTCGTAGGT
GCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTACTGATGAATGCGG
CTATGGAGGATAACACGGTGATCATCACGGCGTTAAACGAAGCATGGGTC
AAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTTTCAAAGCCGGTAT
AGGAACAGAGATACTATTGAAACACGTGATCGCGGTTTGCTTGGATAAGC
ATGCATACGATCGGTGCATAGAGGTTCATCCTCATTGCTACTTGATTAAC
GCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGTTTATGACGCCTGG
TTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTTAAGGAAGTTCTTG
GATTAGGATACAACTTCATCTTCACGGTACGTGTAACACTAATTTTTTCC
CCTTATTTCATATATAATTAGTTTATATATATATATATATATATATATAT
ATATATATATATATTGATCCTTTAAAATATGAAATTTCCTCTATACCAAT
TAGATATGTTTTCCCACCATCAGCGTATTTTCCAAACAATTTTTCATGAT
ACGATTTATATACAAATAAAAGTATTAATAATATAATAAGAAAAATGATC
TACTTTATGTAAGATATTAGTATTTGGTCGAAGTACGCTGAAGAGAAATG
ACTTCAAGAAGAATATAAATAGTTATGATTATAAGAAACATGAATTGTTG
ATTTATCGGACATTTATGTACCTATGGATATGAATAGGAATATTTTCCCC
CCTATATTTTCCCTTTTGCTAGATTTTATTTATTTTTTTTTTGGTGAAGG
TTTTAGACTTGACTATCGATATTCTTTGTTTTATTTTGAGCCTAACTCTG
ACTTCCATTTATTCCGTTTTTCTTGATATATACTGTTGAACCATTGATTT
GTTCATAATAGGAGGCGGGTTAGGACTCTAAGATAGAGATTAACTTCAGC
ATAACATGTATGTTTACGTGTGTACATAACTACATATAGAGAGTGGTTTT
ATTGTCAACGATATATAATTCTAGATATAAAGTAAGTATACTGAAATTAT
CTTAAGATAGTAGTACGTTATTTTACATTATTGTAATTGTCATCATATCA
TAATAAAGGTACCAATAACTAAGTTGTACATATCTTGTTTGATTGCTGGA
CACTGTATATGATGATTGTGAAGTGTGTAAATGATAAGTTTGTTGTATTT
GCATGCAGGATGCAGATATCTTGTGGCTTAGAGACCCATTTCCCCGGTTC
TTCCGAGACGCCGACTTTCAGATAACATGCGATGATTACAATGGAAAGCC
ATCAGACAAGAATAACCACGTGAACTCCGGATTCACATACGTCAAAGCAA
ACAGCAGAACGTTGAACTTTTACAAGTTCTGGATCAGATCGAGTCGAAAG
TTCCCTGGAAAACACGATCAAGATGTGTTCAACCTCATAAAAAACAAACA
GTTTGTCTTGAAACTTGGAATCAACATTAGGTTTCTTGACACGGTTTACT
TTGGAGGGTTTTGCCAGCCGAGCAGGGACATCAACGTGGTTAACACAATG
CATGCTAATTGTTGTATTGGTTTGGACAACAAAGTGAATAATCTAAAGGC
TGCTCTTGAAGACTGGAAACGATATGTATCGTTGAATACGACCGTGTCTG
AGACTAAATGGAATATTCCACCGAAGTGTGGTTATTAA back to topCoding sequence (CDS) from alignment at westarv0_A01:1749755..1752242+ >BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=CDS|length=1119bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTA
CTGATGAATGCGGCTATGGAGGATAACACGGTGATCATCACGGCGTTAAA
CGAAGCATGGGTCAAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTT
TCAAAGCCGGTATAGGAACAGAGATACTATTGAAACACGTGATCGCGGTT
TGCTTGGATAAGCATGCATACGATCGGTGCATAGAGGTTCATCCTCATTG
CTACTTGATTAACGCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGT
TTATGACGCCTGGTTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTT
AAGGAAGTTCTTGGATTAGGATACAACTTCATCTTCACGGATGCAGATAT
CTTGTGGCTTAGAGACCCATTTCCCCGGTTCTTCCGAGACGCCGACTTTC
AGATAACATGCGATGATTACAATGGAAAGCCATCAGACAAGAATAACCAC
GTGAACTCCGGATTCACATACGTCAAAGCAAACAGCAGAACGTTGAACTT
TTACAAGTTCTGGATCAGATCGAGTCGAAAGTTCCCTGGAAAACACGATC
AAGATGTGTTCAACCTCATAAAAAACAAACAGTTTGTCTTGAAACTTGGA
ATCAACATTAGGTTTCTTGACACGGTTTACTTTGGAGGGTTTTGCCAGCC
GAGCAGGGACATCAACGTGGTTAACACAATGCATGCTAATTGTTGTATTG
GTTTGGACAACAAAGTGAATAATCTAAAGGCTGCTCTTGAAGACTGGAAA
CGATATGTATCGTTGAATACGACCGTGTCTGAGACTAAATGGAATATTCC
ACCGAAGTGTGGTTATTAA back to top
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