Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BnaA01G0022900WE | BnaA01G0022900WE | Brassica napus Westar | gene | westarv0_A01 1515241..1518528 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0022900WE.utr3p1 | BnaA01T0022900WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 1515241..1515506 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BnaA01T0022900WE | cds.BnaA01T0022900WE | Brassica napus Westar | CDS | westarv0_A01 1517716..1517830 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0022900WE.utr5p2 | BnaA01T0022900WE.utr5p2 | Brassica napus Westar | five_prime_UTR | westarv0_A01 1517831..1517831 - |
BnaA01T0022900WE.utr5p1 | BnaA01T0022900WE.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 1518294..1518528 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=mRNA|length=1696bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
AACGAATCAGTGTCGGCTCTCGGGTTCCGGAAAAAACACACACACAAACA TTGTACGTCGGATCCAAAACGCGCGTTACTACCAGACAACCGTGAATCTT TCTTCTTCCGCCATTGCTCGGAACTCGCGTCTTCGGGCAATGTGCAGAAA CTGAGTCATCCTCCGAGTTAGCAAACCGAAACTTGGAGGTTCAGACTAAT CCCAAGTTGGGTTTTGTGAGAAACCGCGTTTCCAAAATGTTCAACTTCAA GCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAATCTTGAAAGCAGAAG GATTATTTGTCAATATTACATTTGTTCGAAACGCAGTCGCAAGAGGGGCC GTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTACACCGAGGTTCTGG AACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGGAGGAGGATGGTGTA ATAATGTAACAAACTGCCTTAGTCGGATGCATACTCGACTAGGTTCATCC AAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATTCTTAGCAATAAGAA ACAATATAATCCTGATTTTTACAATTGGAATAGAGTGAAAGTCAGATACT GCGACGGGTCATCATTCACCGGAGATGTGCAAGCAGTGAACCCTGCTACT AATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCTGTTATGCAGGAGTT GCTAGCTAAAGGCATGAGAAACGCTGAGAATGCTGTTTTGTCCGGGTGTT CTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACAGTTTCCGTGCTTTA TTACCGATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTCTTTCT CAACACAAGAGACGTCTCAGGAGCTCAATACATTAAATCATACTTCAAAG ATGTGGTTGCTCTACATGGATCAGCAAAGAATTTGCCGAGGACATGCACA TCAAGATTGACCCCTGCTATGTGTTTCTTCCCGCAATACGTTGCTCGCCA GATTAGAACTCCTGTATTCATTCTTAATGCCGCATACGACTCTTGGCAGA TAAAGAACATTTTGGCTCCCCGTGCTGCTGATCCTTATGGAAAATGGCAA AGTTGTCAACTTGACATCAAGAATTGCCAACCAAACCAGCTCAAAGTTAT GCAAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGATAGGTCTAGGGAGAT CTTCATCAAGAGGGATGTTCATAGACTCTTGTTACACTCACTGCCAAACC GAGACACAAACTTCATGGTTCTGGCAAGATTCTCCCATTCTAAACCGAAC GACAATAGCAAAAGCCGTTGGAGATTGGGTTTATGACAGAAAATTGTTTC AGAAGATAGATTGTCCTTATCCTTGTAACCCTACTTGCCACCACAGGGTT TTCACTCCTCAAGATGCTCCTCCAATTTAAGAAATACATATAGATTTACT ATTCTTTAAAAAAAGAAAAAGATACTTATAAATGACTCATTTGTCATATT ATAGTGAAATATTTTTAGGTTTTAGCTATAGAAAAAGAAAAGGTGTGATT GATTCTTGAGTGTTGAGAATACGCAAAAGGAGTAATTTTCTTCAGCACAT GTGTGTGCTGAAGCTGCTCTGTTTTCTCTTCCATTCTTATGTAAAATGCA AAATTGTTACTTGTATTCGAATAAATAAAGTATAATTTTTTCATAA back to topprotein sequence of BnaA01T0022900WE >BnaA01T0022900WE-P ID=BnaA01T0022900WE-P|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=polypeptide|length=398bp
MFNFKQWLVLVVCSLAILKAEGLFVNITFVRNAVARGAVCLDGSPPAYHL HRGSGTGINSWLIQLEGGGWCNNVTNCLSRMHTRLGSSKKMVENLAFSAI LSNKKQYNPDFYNWNRVKVRYCDGSSFTGDVQAVNPATNLHFRGARVWLA VMQELLAKGMRNAENAVLSGCSAGGLASLMHCDSFRALLPMGTKVKCLSD AGFFLNTRDVSGAQYIKSYFKDVVALHGSAKNLPRTCTSRLTPAMCFFPQ YVARQIRTPVFILNAAYDSWQIKNILAPRAADPYGKWQSCQLDIKNCQPN QLKVMQDFRLEFLSAVIGLGRSSSRGMFIDSCYTHCQTETQTSWFWQDSP ILNRTTIAKAVGDWVYDRKLFQKIDCPYPCNPTCHHRVFTPQDAPPI. back to topmRNA from alignment at westarv0_A01:1515241..1518528- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=mRNA|length=3288bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar) AACGAATCAGTGTCGGCTCTCGGGTTCCGGAAAAAACACACACACAAACA
TTGTACGTCGGATCCAAAACGCGCGTTACTACCAGACAACCGTGAATCTT
TCTTCTTCCGCCATTGCTCGGAACTCGCGTCTTCGGGCAATGTGCAGAAA
CTGAGTCATCCTCCGAGTTAGCAAACCGAAACTTGGAGGTTCAGACTAAT
CCCAAGTTGGGTTTTGTGAGAAACCGCGTTTCCAAGTAAGTGCGATTGCG
GCAGAAGCTTTCTGTCCAAGAAAGTTTTATTCTTTTCCCAGTGATTCTTT
CTCGTTGATTTCTTCTACGTAGAGGAAAAGATTTGTTCTTTCGTTACTTT
CTGGAAAAAAAAAACATCCTGACACAATCTAATGACCTGATCAAAACTTT
CTGGTTAATTTTTTTGTTCTTTTGTTTTTATTAGCTGGAATTGAAATCTA
ATTAAAATCTACTAAAAACTAAAAAACCATTTATTTTAGACAACAAATGA
TGTAAGCAGATAGTTCCGATCTAATCTAAGCTAAGAGATTTGTCTACTTA
TGTTCGGATCTTCTCTTTTAAGTACTTTTGTTTTGCTTTGCTCAGAGTTG
TCTTTTTGGTACTATCATGCTATTTTCGTTAGCTATTCTCCTTTTTACAT
GTACTTCTGTTTTCTATATTCTTTAATTATTTAATTTCATGTTCCAGAAT
GTTCAACTTCAAGCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAATCT
TGAAAGCAGAAGGATTATTTGTCAATATTACATTTGTTCGAAACGCAGTC
GCAAGAGGGGCCGGTGAGTTTTTTATATATATAATCTTTAATTTGGTCAA
AGTTTTTTTCTTTTTTTTTTCTGTATGTGTTTAATAATTGAAATTCATTA
TTACTTTGCAGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTACACC
GAGGTTCTGGAACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGTCTTG
TTCTGTTTTTTTTTTCTTTATTTAGTTTCTCTTGTGTTCTGTTTGTTCCT
GCTTGTGCTAACCCGATGCTCATATAAAATTTGATCTTTGTGATACTTAT
GAGATGATTCGGAATGAAGATTTTGTGGAAATGATTGATTTTTAGGGAGG
AGGATGGTGTAATAATGTAACAAACTGCCTTAGTCGGATGCATACTCGAC
TAGGTTCATCCAAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATTCTT
AGCAATAAGAAACAATATAATCCTGGTAATTTCTTACTAATTCTTGATCA
AACATAAGTTTGTTTTTATTTATAAATTTTTATCTAATGGGTTTTGAATG
GTGGATTCTTGGAAATGGCAGATTTTTACAATTGGAATAGAGTGAAAGTC
AGATACTGCGACGGGTCATCATTCACCGGAGATGTGCAAGCAGTGAACCC
TGTGAGTATTAACAAGAAAACATTAAGATTTTCTATTTTTTAATGTTGTA
AAGGAAGAGTCAAAATCTTCCTTATTCGATAATCATAAATGGTGATTTGA
TCAGGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCTGTTA
TGCAGGAGTTGCTAGCTAAAGGCATGAGAAACGCTGAGAATGTTAGCTTT
CTTTTTTTCCTCCAACCTCCAAGAAACTCTTTGCAAGCTTTTCTTTACAA
GTTATCTAAAACGTTGATGAAAAAACTATGGCAGGCTGTTTTGTCCGGGT
GTTCTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACAGTTTCCGTGCT
TTATTACCGATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTCTT
TCTCAACACGTAAGACAATTGTTTCACTCTTTATCTGTCACTAACAAAGA
CCAGTGATTTATAGTCTAACAAAAAAAGACATTTCGTTGGTATGTTTTTT
CAGAAGAGACGTCTCAGGAGCTCAATACATTAAATCATACTTCAAAGATG
TGGTTGCTCTACATGTAAGGGTTTATTTGCTTTCTCCCCTATTGTGGGGG
ACTTATTTCTCCTCTAGTGACACTCTTTTCATGCTTTTTTCAGGGATCAG
CAAAGAATTTGCCGAGGACATGCACATCAAGATTGACCCCTGCTATGGTA
AGAAACATTCATGTTATCTCTTTTAAATTCATTTTTTTTGTTTCTCTTCA
AATGTTACTCATATAATCATTACCAACAAAATGGCAGTGTTTCTTCCCGC
AATACGTTGCTCGCCAGATTAGAACTCCTGTATTCATTCTTAATGCCGCA
TACGACTCTTGGCAGGTACGTTATATCTTTGTGTAACTTACCCAAGATGT
TTTAAAACAGATCTTTCAGAATAATCCAAGTTCTAAAAGCTCATCTTTAA
GTTTCATATATCTTTCTCAGATAAAGAACATTTTGGCTCCCCGTGCTGCT
GATCCTTATGGAAAATGGCAAAGTTGTCAACTTGACATCAAGAATTGCCA
ACCAAACCAGCTCAAAGTTATGCAAGGTTAGCCTCAGAACCAAAAGCTAT
GCAAGAGTGTGATATTGTTTTTTTGGATGGTGTTTTCTTAACATCATTGC
ATGGTTTTATGTTATTTAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGAT
AGGTCTAGGGAGATCTTCATCAAGAGGGATGTTCATAGACTCTTGTTACA
CTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCC
ATTCTAAACCGAACGGTAAAATTCACAAAAACTTTTTTTCTACAAATTTT
TGTGAAAATACTAGGTCATAATATTAAATAAAACCAGTATACATTTGTGT
CTTTCTGATCATTTTCTTGTTAATTTTTTGATTATGGGAGCAGACAATAG
CAAAAGCCGTTGGAGATTGGGTTTATGACAGAAAATTGTTTCAGAAGATA
GATTGTCCTTATCCTTGTAACCCTACTTGCCACCACAGGGTTTTCACTCC
TCAAGATGCTCCTCCAATTTAAGAAATACATATAGATTTACTATTCTTTA
AAAAAAGAAAAAGATACTTATAAATGACTCATTTGTCATATTATAGTGAA
ATATTTTTAGGTTTTAGCTATAGAAAAAGAAAAGGTGTGATTGATTCTTG
AGTGTTGAGAATACGCAAAAGGAGTAATTTTCTTCAGCACATGTGTGTGC
TGAAGCTGCTCTGTTTTCTCTTCCATTCTTATGTAAAATGCAAAATTGTT
ACTTGTATTCGAATAAATAAAGTATAATTTTTTCATAA back to topCoding sequence (CDS) from alignment at westarv0_A01:1515241..1518528- >BnaA01T0022900WE ID=BnaA01T0022900WE|Name=BnaA01T0022900WE|organism=Brassica napus Westar|type=CDS|length=1194bp|location=Sequence derived from alignment at westarv0_A01:1515241..1518528- (Brassica napus Westar) ATGTTCAACTTCAAGCAATGGTTGGTTCTTGTGGTATGTTCGTTAGCAAT CTTGAAAGCAGAAGGATTATTTGTCAATATTACATTTGTTCGAAACGCAG TCGCAAGAGGGGCCGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTA CACCGAGGTTCTGGAACTGGAATCAATAGCTGGTTGATTCAGCTTGAGGG AGGAGGATGGTGTAATAATGTAACAAACTGCCTTAGTCGGATGCATACTC GACTAGGTTCATCCAAGAAAATGGTGGAGAATCTTGCGTTCTCAGCTATT CTTAGCAATAAGAAACAATATAATCCTGATTTTTACAATTGGAATAGAGT GAAAGTCAGATACTGCGACGGGTCATCATTCACCGGAGATGTGCAAGCAG TGAACCCTGCTACTAATCTTCACTTCAGAGGTGCTCGAGTTTGGCTAGCT GTTATGCAGGAGTTGCTAGCTAAAGGCATGAGAAACGCTGAGAATGCTGT TTTGTCCGGGTGTTCTGCTGGCGGGTTAGCTTCCCTGATGCATTGTGACA GTTTCCGTGCTTTATTACCGATGGGTACCAAAGTAAAATGTCTTTCAGAT GCTGGTTTCTTTCTCAACACAAGAGACGTCTCAGGAGCTCAATACATTAA ATCATACTTCAAAGATGTGGTTGCTCTACATGGATCAGCAAAGAATTTGC CGAGGACATGCACATCAAGATTGACCCCTGCTATGTGTTTCTTCCCGCAA TACGTTGCTCGCCAGATTAGAACTCCTGTATTCATTCTTAATGCCGCATA CGACTCTTGGCAGATAAAGAACATTTTGGCTCCCCGTGCTGCTGATCCTT ATGGAAAATGGCAAAGTTGTCAACTTGACATCAAGAATTGCCAACCAAAC CAGCTCAAAGTTATGCAAGATTTCAGGTTAGAGTTCTTGAGCGCGGTGAT AGGTCTAGGGAGATCTTCATCAAGAGGGATGTTCATAGACTCTTGTTACA CTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCAAGATTCTCCC ATTCTAAACCGAACGACAATAGCAAAAGCCGTTGGAGATTGGGTTTATGA CAGAAAATTGTTTCAGAAGATAGATTGTCCTTATCCTTGTAACCCTACTT GCCACCACAGGGTTTTCACTCCTCAAGATGCTCCTCCAATTTAA back to top
|