Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0022600WE | BnaA01G0022600WE | Brassica napus Westar | gene | westarv0_A01 1497144..1498674 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0022600WE.exon5 | BnaA01T0022600WE.exon5 | Brassica napus Westar | exon | westarv0_A01 1497144..1497424 - |
| BnaA01T0022600WE.exon4 | BnaA01T0022600WE.exon4 | Brassica napus Westar | exon | westarv0_A01 1497510..1497652 - |
| BnaA01T0022600WE.exon3 | BnaA01T0022600WE.exon3 | Brassica napus Westar | exon | westarv0_A01 1497756..1497837 - |
| BnaA01T0022600WE.exon2 | BnaA01T0022600WE.exon2 | Brassica napus Westar | exon | westarv0_A01 1498004..1498081 - |
| BnaA01T0022600WE.exon1 | BnaA01T0022600WE.exon1 | Brassica napus Westar | exon | westarv0_A01 1498368..1498674 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0022600WE.utr3p1 | BnaA01T0022600WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 1497144..1497214 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0022600WE | cds.BnaA01T0022600WE | Brassica napus Westar | CDS | westarv0_A01 1498368..1498625 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0022600WE.utr5p1 | BnaA01T0022600WE.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 1498626..1498674 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0022600WE ID=BnaA01T0022600WE|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=mRNA|length=891bp|location=Sequence derived from alignment at westarv0_A01:1497144..1498674- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ACACCTTGTTTGACTCAACAACGACTCGTCTAACCCTTTAGCAGCAGCCA
TGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGCG
CCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAAG
CTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGTT
CTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGCG
GCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGAT
TGAGAAGGTCATTTATCAATGTAGATTCATGGCGTTTCTTGGAACTTTAG
GATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTC
GGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTACT
TCTGGTAGAAGCCATAGATACATACCTTCTAGGAACTGTGATGTTGGTCT
TCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTTCGGAA
ACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGCATGTT
CCCCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGC
TGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTTG
TTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTATG
TATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTA
GGCTCAATGGCTCACACTGAGTTAATCCTGTTGCCTTTTTTAAACAAATG
ACACTTTGTATTATGTGTATAATGTTTTAGTAAAGTTTCAC back to topprotein sequence of BnaA01T0022600WE >BnaA01T0022600WE-P ID=BnaA01T0022600WE-P|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=polypeptide|length=257bp
MTTPPCRTINANNAIAAPSPSGMIFHGKRLVKSSSPGLNLPTKRLAWSLS
SPGRFLSSPVASSSTSAAVTSNSTNRLEALEEGIEKVIYQCRFMAFLGTL
GSLLGSVLCFIKGCQYVGDSFVQYSVNRGKVILLLVEAIDTYLLGTVMLV
FGMGLYELFISNLTTSETISHDSVSNRSSLFGMFPLKERPQWLEVKTVSE
LKTKLGHVIVMLLLIGLFDKSRKVAITSVADLLCISASIFLSSACLFLLS
RLNGSH. back to topmRNA from alignment at westarv0_A01:1497144..1498674- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0022600WE ID=BnaA01T0022600WE|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=mRNA|length=1531bp|location=Sequence derived from alignment at westarv0_A01:1497144..1498674- (Brassica napus Westar)
ACACCTTGTTTGACTCAACAACGACTCGTCTAACCCTTTAGCAGCAGCCA
TGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGCG
CCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAAG
CTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGTT
CTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGCG
GCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGAT
TGAGAAGGTAAAAAAAAAGGGTCGATTCCAGATTCCATTTAGTTAGTGAA
TTAATCGATAAAATTGTTAACTTTAAGGATTTGAATTTGGTTGTTTATAG
TTTGAAGCAGAGGTTATAATGTGTTCTTAGTTAAAAGATAGAGATTTTTT
TTTTTTAAAGGAAACCAAAGGTAAAAGGGATGATTACTAAAGATCATAAC
ATTGATTGATGTTTGGTAAAGGCTGTCTTTTTTTTTTATCAGTTATAAGG
GATATGAATGGCTCAACGAATAAGAGAACATGTGTTTTTTCAGGTCATTT
ATCAATGTAGATTCATGGCGTTTCTTGGAACTTTAGGATCTCTTTTGGGA
TCGGTTCTGTGTTTCATCAAGGTAAAAGCCACTGCAGATTCTCTTCTTGC
TCTCTCTCTCTCTGGTTTAGATGATATAGTGTTGGAATATGCATAAGAAT
GTCCTAATTTTTTTTAATCTTACAGAAGCAACACATTATATACTCTATAA
ACTATTTTGCTGTTCCTCTAACATTTGATTGGTACAGGGATGTCAGTACG
TCGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTA
CTTCTGGTAGAAGCCATAGGTGAGAAAGTTTGTTGTTATTACTTCTTTTG
TAAGAGCATATTATTATATGCACAGAAACTTTATTGATAAATCATATATG
ATGCTACACAACATATTTGTAGATACATACCTTCTAGGAACTGTGATGTT
GGTCTTCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTT
CGGAAACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGC
ATGTTCCCCTTAAAGGTTGCTCTTTTTTTTTTAAGAATCTTTATAATGGA
TCAAAAATTTCCTTTTTGGTTATGCTAAATCCTTTTTTTGTTTTCTTCAG
GAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAA
GCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTTGTTCGACAAGA
GCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTATGTATCTCTGCT
TCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGG
CTCACACTGAGTTAATCCTGTTGCCTTTTTTAAACAAATGACACTTTGTA
TTATGTGTATAATGTTTTAGTAAAGTTTCAC back to topCoding sequence (CDS) from alignment at westarv0_A01:1497144..1498674- >BnaA01T0022600WE ID=BnaA01T0022600WE|Name=BnaA01T0022600WE|organism=Brassica napus Westar|type=CDS|length=771bp|location=Sequence derived from alignment at westarv0_A01:1497144..1498674- (Brassica napus Westar)
ATGACAACTCCTCCTTGCCGGACCATAAACGCTAATAATGCTATCGCCGC
GCCATCGCCTTCGGGAATGATCTTCCACGGTAAGAGGCTCGTGAAATCAA
GCTCACCTGGCTTGAATCTCCCGACGAAGAGATTGGCTTGGAGCTTAAGT
TCTCCGGGGAGGTTTCTCTCTTCTCCAGTGGCCTCTAGTTCTACATCGGC
GGCTGTGACATCGAATTCTACGAATCGACTGGAAGCTTTAGAAGAAGGGA
TTGAGAAGGTCATTTATCAATGTAGATTCATGGCGTTTCTTGGAACTTTA
GGATCTCTTTTGGGATCGGTTCTGTGTTTCATCAAGGGATGTCAGTACGT
CGGAGACTCGTTTGTGCAGTACTCTGTGAACCGTGGGAAGGTGATATTAC
TTCTGGTAGAAGCCATAGATACATACCTTCTAGGAACTGTGATGTTGGTC
TTCGGGATGGGCCTTTACGAGCTCTTCATTAGCAACCTCACAACTTCGGA
AACCATTTCACACGACAGTGTTTCCAATAGATCGAGTCTCTTTGGCATGT
TCCCCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAG
CTGAAAACGAAGCTGGGACATGTTATAGTGATGCTACTGTTGATTGGTTT
GTTCGACAAGAGCAGGAAAGTTGCCATCACTTCTGTCGCGGATTTGCTAT
GTATCTCTGCTTCTATCTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCT
AGGCTCAATGGCTCACACTGA back to top
|