C09p73850.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p73850.1_BnaDARv10-RA
Unique Name	C09p73850.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	103

Homology

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34796.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 215 bits (547), Expect = 1.230e-70
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 102
            MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL
Sbjct:    1 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 101

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3501145.1 (hypothetical protein F2Q69_00045795 [Brassica cretica])

HSP 1 Score: 210 bits (535), Expect = 8.360e-69
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 102
            MAVHVSKSIY AFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL
Sbjct:    1 MAVHVSKSIYRAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 101

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID43017.1 (hypothetical protein BRARA_J02855 [Brassica rapa])

HSP 1 Score: 189 bits (479), Expect = 2.840e-60
Identity = 92/100 (92.00%), Postives = 94/100 (94.00%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQF---RPYRNPIRRFCDAFDICFW 98
            MAV VSK+IY AFIVVNLFTMLLSAQVSDSI+TKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQF   RPYRNPIRRFCD FDICFW
Sbjct:    1 MAVQVSKNIYRAFIVVNLFTMLLSAQVSDSIVTKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFPLTRPYRNPIRRFCDTFDICFW 100

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD21330.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 186 bits (471), Expect = 4.710e-59
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQF---RPYRNPIRRFCDAFDICFW 98
            MAV VSK+IY AFIVVNLFTMLLSAQVSDSI+TKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCD KKNGQYNINQF   RPYRNPIRRFCD FDICFW
Sbjct:    1 MAVQVSKNIYRAFIVVNLFTMLLSAQVSDSIVTKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDSKKNGQYNINQFPLTRPYRNPIRRFCDTFDICFW 100

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2539654.1 (hypothetical protein F2Q68_00023511 [Brassica cretica] >KAF2573235.1 hypothetical protein F2Q70_00006840 [Brassica cretica] >KAF3562145.1 hypothetical protein DY000_02019922 [Brassica cretica])

HSP 1 Score: 137 bits (346), Expect = 5.100e-40
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFC 90
            MAV VSK+IY AFI+VNLFT+  SAQVSDSI+T ECMKNCI+NQCIK  + A PGICYTSCKIMCDPKKNGQYNIN    Y+NPIRR C
Sbjct:    1 MAVQVSKNIYRAFIIVNLFTLFFSAQVSDSIMTTECMKNCIINQCIKTSEKATPGICYTSCKIMCDPKKNGQYNINV---YQNPIRRLC 86

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3500215.1 (hypothetical protein F2Q69_00045797 [Brassica cretica])

HSP 1 Score: 136 bits (343), Expect = 1.460e-39
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFC 90
            MAV VSK+IY AFI VNLFT+  SAQVSDSI+T ECMKNCI+NQCIK  + A PGICYTSCKIMCDPKKNGQYNIN    Y+NPIRR C
Sbjct:    1 MAVQVSKNIYRAFITVNLFTLFFSAQVSDSIMTTECMKNCIINQCIKTSEKATPGICYTSCKIMCDPKKNGQYNINV---YQNPIRRLC 86

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID46938.1 (hypothetical protein BRARA_I03573 [Brassica rapa])

HSP 1 Score: 113 bits (283), Expect = 2.130e-30
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAVHVSK IY AF ++NL T+L SAQVSDSI TK CMKNCI+NQC++    A P  CY  CKIMCDPKK+GQ +I     Y NPI RFC  F+  F
Sbjct:    1 MAVHVSKKIYSAFFILNLLTILFSAQVSDSIKTKACMKNCIINQCMQGSHKATPAKCYRPCKIMCDPKKDGQ-DIANPHAYHNPIERFCINFNWIF 95

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID45230.1 (hypothetical protein BRARA_I01973 [Brassica rapa])

HSP 1 Score: 107 bits (268), Expect = 4.190e-28
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAV  SK IY AFI+VNL T+L SAQVSDSI  K CMKNCI+NQC++  + A P  CYT CKIMCDPKK+G+  I     Y NP+ RFC  F   F
Sbjct:    1 MAVQASKKIYRAFIIVNLLTILFSAQVSDSIKMKACMKNCIINQCMRGSEKATPAKCYTPCKIMCDPKKDGK-EIADPNTYHNPVVRFCINFGWIF 95

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID80302.1 (hypothetical protein BRARA_A02973 [Brassica rapa])

HSP 1 Score: 105 bits (263), Expect = 2.410e-27
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAV  SK IY AFI+VNL T+L SAQVSDSI  K CMKNCI+N+C++  + A P  CYT CKIMCDPKK+G+ +I     Y NP+ RFC  F   F
Sbjct:    1 MAVQASKKIYRAFIIVNLLTILFSAQVSDSIKMKACMKNCIINKCMRGSEKATPAKCYTPCKIMCDPKKDGK-DIADPNIYHNPVVRFCINFGWIF 95

[Close]

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID46936.1 (hypothetical protein BRARA_I03571 [Brassica rapa])

HSP 1 Score: 105 bits (263), Expect = 2.410e-27
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0

Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAV VSK IY AFI+VNL  +L SAQVSDSI  K C+KNCI+NQC++    A P  CYT CKIMCDPKK+G + I     YRNP+ RFC  F   F
Sbjct:    1 MAVQVSKKIYHAFIIVNLLIILFSAQVSDSIKLKACIKNCIINQCMRGSGKATPAKCYTPCKIMCDPKKDG-HEIADPNIYRNPVVRFCINFGWIF 95

The following BLAST results are available for this feature:

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34796.1	1.230e-70	100.00	unnamed protein product [Brassica oleracea]	[more]
KAF3501145.1	8.360e-69	99.01	hypothetical protein F2Q69_00045795 [Brassica cret...	[more]
RID43017.1	2.840e-60	92.00	hypothetical protein BRARA_J02855 [Brassica rapa]	[more]
VDD21330.1	4.710e-59	91.00	unnamed protein product [Brassica rapa]	[more]
KAF2539654.1	5.100e-40	76.40	hypothetical protein F2Q68_00023511 [Brassica cret...	[more]
KAF3500215.1	1.460e-39	76.40	hypothetical protein F2Q69_00045797 [Brassica cret...	[more]
RID46938.1	2.130e-30	61.46	hypothetical protein BRARA_I03573 [Brassica rapa]	[more]
RID45230.1	4.190e-28	59.38	hypothetical protein BRARA_I01973 [Brassica rapa]	[more]
RID80302.1	2.410e-27	58.33	hypothetical protein BRARA_A02973 [Brassica rapa]	[more]
RID46936.1	2.410e-27	59.38	hypothetical protein BRARA_I03571 [Brassica rapa]	[more]

Pages

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31710	GB\|AAF16529.1-RELATED	coord: 2..98
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..31
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..102
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 12..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 24..31
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.727
None	No IPR available	TMHMM	TMhelix		coord: 10..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:64755352..64755660 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p73850.1_BnaDARv10-RA	C09p73850.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 64755352..64755660 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p73850.1_BnaDARv10-PA ID=C09p73850.1_BnaDARv10-PA|Name=C09p73850.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=103bp
MMAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVP
KLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEW
KL.

Orthology

View orthology data for C09p73850.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p73850.1_BnaDARv10-PA