C09p73850.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p73850.1_BnaDARv10-RA
Unique NameC09p73850.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length103
Homology
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34796.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 215 bits (547), Expect = 1.230e-70
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 102
            MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL
Sbjct:    1 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 101          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3501145.1 (hypothetical protein F2Q69_00045795 [Brassica cretica])

HSP 1 Score: 210 bits (535), Expect = 8.360e-69
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 102
            MAVHVSKSIY AFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL
Sbjct:    1 MAVHVSKSIYRAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEWKL 101          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID43017.1 (hypothetical protein BRARA_J02855 [Brassica rapa])

HSP 1 Score: 189 bits (479), Expect = 2.840e-60
Identity = 92/100 (92.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQF---RPYRNPIRRFCDAFDICFW 98
            MAV VSK+IY AFIVVNLFTMLLSAQVSDSI+TKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQF   RPYRNPIRRFCD FDICFW
Sbjct:    1 MAVQVSKNIYRAFIVVNLFTMLLSAQVSDSIVTKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFPLTRPYRNPIRRFCDTFDICFW 100          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD21330.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 186 bits (471), Expect = 4.710e-59
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQF---RPYRNPIRRFCDAFDICFW 98
            MAV VSK+IY AFIVVNLFTMLLSAQVSDSI+TKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCD KKNGQYNINQF   RPYRNPIRRFCD FDICFW
Sbjct:    1 MAVQVSKNIYRAFIVVNLFTMLLSAQVSDSIVTKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDSKKNGQYNINQFPLTRPYRNPIRRFCDTFDICFW 100          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2539654.1 (hypothetical protein F2Q68_00023511 [Brassica cretica] >KAF2573235.1 hypothetical protein F2Q70_00006840 [Brassica cretica] >KAF3562145.1 hypothetical protein DY000_02019922 [Brassica cretica])

HSP 1 Score: 137 bits (346), Expect = 5.100e-40
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFC 90
            MAV VSK+IY AFI+VNLFT+  SAQVSDSI+T ECMKNCI+NQCIK  + A PGICYTSCKIMCDPKKNGQYNIN    Y+NPIRR C
Sbjct:    1 MAVQVSKNIYRAFIIVNLFTLFFSAQVSDSIMTTECMKNCIINQCIKTSEKATPGICYTSCKIMCDPKKNGQYNINV---YQNPIRRLC 86          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3500215.1 (hypothetical protein F2Q69_00045797 [Brassica cretica])

HSP 1 Score: 136 bits (343), Expect = 1.460e-39
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFC 90
            MAV VSK+IY AFI VNLFT+  SAQVSDSI+T ECMKNCI+NQCIK  + A PGICYTSCKIMCDPKKNGQYNIN    Y+NPIRR C
Sbjct:    1 MAVQVSKNIYRAFITVNLFTLFFSAQVSDSIMTTECMKNCIINQCIKTSEKATPGICYTSCKIMCDPKKNGQYNINV---YQNPIRRLC 86          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID46938.1 (hypothetical protein BRARA_I03573 [Brassica rapa])

HSP 1 Score: 113 bits (283), Expect = 2.130e-30
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAVHVSK IY AF ++NL T+L SAQVSDSI TK CMKNCI+NQC++    A P  CY  CKIMCDPKK+GQ +I     Y NPI RFC  F+  F
Sbjct:    1 MAVHVSKKIYSAFFILNLLTILFSAQVSDSIKTKACMKNCIINQCMQGSHKATPAKCYRPCKIMCDPKKDGQ-DIANPHAYHNPIERFCINFNWIF 95          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID45230.1 (hypothetical protein BRARA_I01973 [Brassica rapa])

HSP 1 Score: 107 bits (268), Expect = 4.190e-28
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAV  SK IY AFI+VNL T+L SAQVSDSI  K CMKNCI+NQC++  + A P  CYT CKIMCDPKK+G+  I     Y NP+ RFC  F   F
Sbjct:    1 MAVQASKKIYRAFIIVNLLTILFSAQVSDSIKMKACMKNCIINQCMRGSEKATPAKCYTPCKIMCDPKKDGK-EIADPNTYHNPVVRFCINFGWIF 95          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID80302.1 (hypothetical protein BRARA_A02973 [Brassica rapa])

HSP 1 Score: 105 bits (263), Expect = 2.410e-27
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAV  SK IY AFI+VNL T+L SAQVSDSI  K CMKNCI+N+C++  + A P  CYT CKIMCDPKK+G+ +I     Y NP+ RFC  F   F
Sbjct:    1 MAVQASKKIYRAFIIVNLLTILFSAQVSDSIKMKACMKNCIINKCMRGSEKATPAKCYTPCKIMCDPKKDGK-DIADPNIYHNPVVRFCINFGWIF 95          
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Match: RID46936.1 (hypothetical protein BRARA_I03571 [Brassica rapa])

HSP 1 Score: 105 bits (263), Expect = 2.410e-27
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0
Query:    2 MAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVPKLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICF 97
            MAV VSK IY AFI+VNL  +L SAQVSDSI  K C+KNCI+NQC++    A P  CYT CKIMCDPKK+G + I     YRNP+ RFC  F   F
Sbjct:    1 MAVQVSKKIYHAFIIVNLLIILFSAQVSDSIKLKACIKNCIINQCMRGSGKATPAKCYTPCKIMCDPKKDG-HEIADPNIYRNPVVRFCINFGWIF 95          
The following BLAST results are available for this feature:
BLAST of C09p73850.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34796.11.230e-70100.00unnamed protein product [Brassica oleracea][more]
KAF3501145.18.360e-6999.01hypothetical protein F2Q69_00045795 [Brassica cret... [more]
RID43017.12.840e-6092.00hypothetical protein BRARA_J02855 [Brassica rapa][more]
VDD21330.14.710e-5991.00unnamed protein product [Brassica rapa][more]
KAF2539654.15.100e-4076.40hypothetical protein F2Q68_00023511 [Brassica cret... [more]
KAF3500215.11.460e-3976.40hypothetical protein F2Q69_00045797 [Brassica cret... [more]
RID46938.12.130e-3061.46hypothetical protein BRARA_I03573 [Brassica rapa][more]
RID45230.14.190e-2859.38hypothetical protein BRARA_I01973 [Brassica rapa][more]
RID80302.12.410e-2758.33hypothetical protein BRARA_A02973 [Brassica rapa][more]
RID46936.12.410e-2759.38hypothetical protein BRARA_I03571 [Brassica rapa][more]

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InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31710GB|AAF16529.1-RELATEDcoord: 2..98
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..102
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..31
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.727
NoneNo IPR availableTMHMMTMhelixcoord: 10..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:64755352..64755660 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p73850.1_BnaDARv10-RAC09p73850.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 64755352..64755660 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p73850.1_BnaDARv10-PA ID=C09p73850.1_BnaDARv10-PA|Name=C09p73850.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=103bp
MMAVHVSKSIYCAFIVVNLFTMLLSAQVSDSIITKECMKNCIMNQCIKVP
KLAIPGICYTSCKIMCDPKKNGQYNINQFRPYRNPIRRFCDAFDICFWEW
KL.
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