C09p73700.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p73700.1_BnaDARv10-RA
Unique Name	C09p73700.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	133

Homology

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013612436.1 (PREDICTED: uncharacterized protein LOC106318842 [Brassica oleracea var. oleracea] >XP_013612437.1 PREDICTED: uncharacterized protein LOC106318842 [Brassica oleracea var. oleracea] >XP_013612438.1 PREDICTED: uncharacterized protein LOC106318842 [Brassica oleracea var. oleracea] >XP_013704007.1 uncharacterized protein BNACNNG03100D [Brassica napus] >XP_013704008.1 uncharacterized protein BNACNNG03100D [Brassica napus] >XP_013704009.1 uncharacterized protein BNACNNG03100D [Brassica napus] >CDY10409.1 BnaCnng03100D [Brassica napus])

HSP 1 Score: 246 bits (627), Expect = 7.330e-82
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA
Sbjct:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2539126.1 (hypothetical protein F2Q68_00023491 [Brassica cretica] >KAF2571522.1 hypothetical protein F2Q70_00006821 [Brassica cretica] >KAF3567264.1 hypothetical protein DY000_02019903 [Brassica cretica] >VDD34780.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 244 bits (623), Expect = 2.990e-81
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNAR LIQNPNIDA
Sbjct:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARFLIQNPNIDA 132

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34777.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 244 bits (623), Expect = 2.990e-81
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEE+GGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA
Sbjct:    1 MEEKGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD21305.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 234 bits (596), Expect = 3.910e-77
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEEGG+GGSRKRV+PSDEEEKEGET DGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTM KELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNE+TTSLLHNAR LIQNPNI+A
Sbjct:    1 MEEEGGDGGSRKRVKPSDEEEKEGETRDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMFKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEDTTSLLHNARFLIQNPNIEA 132

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013668316.1 (uncharacterized protein LOC106372618 [Brassica napus] >XP_013668317.1 uncharacterized protein LOC106372618 [Brassica napus] >XP_013686549.1 uncharacterized protein LOC106390597 [Brassica napus] >XP_013686550.1 uncharacterized protein LOC106390597 [Brassica napus])

HSP 1 Score: 230 bits (587), Expect = 9.220e-76
Identity = 123/131 (93.89%), Postives = 127/131 (96.95%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNID 131
            MEEEGG+GGSRKRV+PSDEEEKEGET DGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTM KELSNEFEERLIMIHKEHVEKW EEIKELRLLDASNE+TTSLLHNAR LIQNPNI+
Sbjct:    1 MEEEGGDGGSRKRVKPSDEEEKEGETRDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMFKELSNEFEERLIMIHKEHVEKWHEEIKELRLLDASNEDTTSLLHNARFLIQNPNIE 131

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3502385.1 (hypothetical protein F2Q69_00045777 [Brassica cretica])

HSP 1 Score: 227 bits (579), Expect = 1.340e-74
Identity = 126/132 (95.45%), Postives = 126/132 (95.45%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEEGGNGGSRKR    DEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNA  LIQNPNIDA
Sbjct:    1 MEEEGGNGGSRKR----DEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNACFLIQNPNIDA 128

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122736.1 (uncharacterized protein LOC103847409 [Brassica rapa] >XP_009122737.1 uncharacterized protein LOC103847409 [Brassica rapa])

HSP 1 Score: 224 bits (572), Expect = 1.730e-73
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEEGG+GGSRKRV+PSDEEEKEGET DGM LDENET KLVASDEMELRISQILDKIESFT TVSNLLDSGKTM KELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNAR LIQNPNI+A
Sbjct:    1 MEEEGGDGGSRKRVKPSDEEEKEGETRDGMRLDENET-KLVASDEMELRISQILDKIESFTHTVSNLLDSGKTMFKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARFLIQNPNIEA 131

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: RID43002.1 (hypothetical protein BRARA_J02843 [Brassica rapa])

HSP 1 Score: 223 bits (569), Expect = 4.950e-73
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEEGG+GGSRKRV+PSDEEEKEGET DGM LDENET KLVASDEMELRISQILDKIESFT TVSNLLDSGKTM KELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNE+TTSLLHNAR LIQNPNI+A
Sbjct:    1 MEEEGGDGGSRKRVKPSDEEEKEGETRDGMRLDENET-KLVASDEMELRISQILDKIESFTHTVSNLLDSGKTMFKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEDTTSLLHNARFLIQNPNIEA 131

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018446367.1 (PREDICTED: uncharacterized protein LOC108818018 [Raphanus sativus])

HSP 1 Score: 207 bits (526), Expect = 1.900e-66
Identity = 116/135 (85.93%), Postives = 123/135 (91.11%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDE---NETTKLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNIDA 132
            MEEE GNG  RKR+RPSDEEE++   GDGMS+D+   NETTKLVASDEMELRISQILDKIESFTQTVSNLL+SGKTM KELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNAR LI NPNI+A
Sbjct:    1 MEEEAGNGVFRKRMRPSDEEEEK--EGDGMSVDDTLGNETTKLVASDEMELRISQILDKIESFTQTVSNLLESGKTMFKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARFLIHNPNIEA 133

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BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3536149.1 (hypothetical protein F2Q69_00018305 [Brassica cretica])

HSP 1 Score: 202 bits (515), Expect = 9.610e-65
Identity = 116/135 (85.93%), Postives = 122/135 (90.37%), Query Frame = 0

Query:    1 MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLD--ENETT--KLVASDEMELRISQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEEIKELRLLDASNEETTSLLHNARILIQNPNID 131
            MEEE GNGGSRKR++PSDEEEK G   DGMSLD  ENE T  KLVASDEMEL I+QILDKIESFTQTVSNLLD+GKTM KELSNEFEERLIMIHKE+VEKWQEEIKELRLLDASNEETTSLLHNAR LIQNPNI+
Sbjct:    1 MEEEAGNGGSRKRMKPSDEEEKGGSR-DGMSLDATENEETETKLVASDEMELHIAQILDKIESFTQTVSNLLDTGKTMFKELSNEFEERLIMIHKEYVEKWQEEIKELRLLDASNEETTSLLHNARFLIQNPNIE 134

The following BLAST results are available for this feature:

BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p73700.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013612436.1	7.330e-82	100.00	PREDICTED: uncharacterized protein LOC106318842 [B...	[more]
KAF2539126.1	2.990e-81	99.24	hypothetical protein F2Q68_00023491 [Brassica cret...	[more]
VDD34777.1	2.990e-81	99.24	unnamed protein product [Brassica oleracea]	[more]
VDD21305.1	3.910e-77	94.70	unnamed protein product [Brassica rapa]	[more]
XP_013668316.1	9.220e-76	93.89	uncharacterized protein LOC106372618 [Brassica nap...	[more]
KAF3502385.1	1.340e-74	95.45	hypothetical protein F2Q69_00045777 [Brassica cret...	[more]
XP_009122736.1	1.730e-73	93.18	uncharacterized protein LOC103847409 [Brassica rap...	[more]
RID43002.1	4.950e-73	92.42	hypothetical protein BRARA_J02843 [Brassica rapa]	[more]
XP_018446367.1	1.900e-66	85.93	PREDICTED: uncharacterized protein LOC108818018 [R...	[more]
KAF3536149.1	9.610e-65	85.93	hypothetical protein F2Q69_00018305 [Brassica cret...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR35500	OS03G0108700 PROTEIN	coord: 1..132
None	No IPR available	PANTHER	PTHR35500:SF2	BNACNNG03100D PROTEIN	coord: 1..132

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:64678633..64679272 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p73700.1_BnaDARv10-RA	C09p73700.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 64678335..64679478 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p73700.1_BnaDARv10-PA ID=C09p73700.1_BnaDARv10-PA|Name=C09p73700.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=133bp
MEEEGGNGGSRKRVRPSDEEEKEGETGDGMSLDENETTKLVASDEMELRI
SQILDKIESFTQTVSNLLDSGKTMLKELSNEFEERLIMIHKEHVEKWQEE
IKELRLLDASNEETTSLLHNARILIQNPNIDA.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Orthology

View orthology data for C09p73700.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p73700.1_BnaDARv10-PA