C09p73030.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p73030.1_BnaDARv10-RA
Unique NameC09p73030.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length135
Homology
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BLAST of C09p73030.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2536130.1 (hypothetical protein F2Q68_00023420 [Brassica cretica] >KAF2571390.1 hypothetical protein F2Q70_00006751 [Brassica cretica])

HSP 1 Score: 118 bits (296), Expect = 8.710e-32
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0 
Query:    1 MGFEDHEAVLSGLCSGSGFMGFDLGFGSGPVYPIDVMSHDDVNGYSVPVMVKDDDISKMHHEFERTKQMPKMNPQ 75
            MGFE+HEAVLSGL SGSGFMGFDLG GSGPVYPIDVMSHDD   +      +DDDISKMHHEFERTKQMPKMNPQ
Sbjct:    1 MGFEEHEAVLSGLRSGSGFMGFDLGSGSGPVYPIDVMSHDD--RWLFCSCHEDDDISKMHHEFERTKQMPKMNPQ 73
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BLAST of C09p73030.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD31392.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 95.9 bits (237), Expect = 2.140e-22
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 0 
Query:   58 KMHHEFERTKQMPKMNPQDIFELRKRVEAFDLQYEMHASSYQRDCLRNWMLDSASGYFYNQTNGLHYEVLDS 129
            K H EF ++    K    DIFELR RVEAF LQYEMHASSYQRDC+ +W LDSASGY+YNQTNGLHY+ LDS
Sbjct:    2 KPHQEFVKSLCSYK----DIFELRNRVEAFALQYEMHASSYQRDCILDWTLDSASGYYYNQTNGLHYK-LDS 68
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BLAST of C09p73030.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3562090.1 (hypothetical protein DY000_02015571 [Brassica cretica])

HSP 1 Score: 89.0 bits (219), Expect = 7.800e-20
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 0 
Query:   56 ISKMHHEFERTKQMPKMNPQDIFELRKRVEAFDLQYEMHASSYQRDCLRNWMLDSASGYFYNQTN 120
            + K H EF ++    K    DIFELR RVEAF LQYEMHASSYQRDC+ +WMLDSASGY+YNQTN
Sbjct:    3 LGKPHQEFVKSLYTYK----DIFELRNRVEAFALQYEMHASSYQRDCILDWMLDSASGYYYNQTN 63
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BLAST of C09p73030.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2577535.1 (hypothetical protein F2Q68_00000903 [Brassica cretica])

HSP 1 Score: 86.7 bits (213), Expect = 1.000e-19
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 
Query:    1 MGFEDHEAVLSGLCSGSGFMGFDLGFGSGPVYPIDVMSHDDV 42
            MGFE+HEAVLSGLCSGSGFMGFDLG GSGPVYPIDVMSHDDV
Sbjct:    1 MGFEEHEAVLSGLCSGSGFMGFDLGSGSGPVYPIDVMSHDDV 42
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BLAST of C09p73030.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY55826.1 (BnaUnng00610D [Brassica napus])

HSP 1 Score: 66.2 bits (160), Expect = 3.490e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0 
Query:   93 MHASSYQRDCLRNWMLDSASGYFYNQTNGLHYEVLDS 129
            MHASSYQRDC+ +W LDSASGY+YNQTNGLHY+ LDS
Sbjct:    1 MHASSYQRDCILDWTLDSASGYYYNQTNGLHYK-LDS 36
The following BLAST results are available for this feature:
BLAST of C09p73030.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 5
Match NameE-valueIdentityDescription
KAF2536130.18.710e-3281.33hypothetical protein F2Q68_00023420 [Brassica cret... [more]
VDD31392.12.140e-2269.44unnamed protein product, partial [Brassica olerace... [more]
KAF3562090.17.800e-2067.69hypothetical protein DY000_02015571 [Brassica cret... [more]
KAF2577535.11.000e-1995.24hypothetical protein F2Q68_00000903 [Brassica cret... [more]
CDY55826.13.490e-1181.08BnaUnng00610D [Brassica napus][more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:64263997..64269677 +    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p73030.1_BnaDARv10-RAC09p73030.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 64263997..64269677 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p73030.1_BnaDARv10-PA ID=C09p73030.1_BnaDARv10-PA|Name=C09p73030.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=135bp
MGFEDHEAVLSGLCSGSGFMGFDLGFGSGPVYPIDVMSHDDVNGYSVPVM
VKDDDISKMHHEFERTKQMPKMNPQDIFELRKRVEAFDLQYEMHASSYQR
DCLRNWMLDSASGYFYNQTNGLHYEVLDSITVTQ.
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