C09p72960.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p72960.1_BnaDARv10-RA
Unique Name	C09p72960.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	369

Homology

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013730130.1 (uncharacterized protein LOC106433847 [Brassica napus])

HSP 1 Score: 635 bits (1639), Expect = 2.720e-228
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0

Query:    1 MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 368
            MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM
Sbjct:    1 MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 368

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34709.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 634 bits (1634), Expect = 1.510e-227
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0

Query:    2 DSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 368
            DSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM
Sbjct:    1 DSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 367

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013619226.1 (PREDICTED: uncharacterized protein LOC106325715 [Brassica oleracea var. oleracea] >XP_013654672.1 uncharacterized protein BNAC02G03350D [Brassica napus] >CDY44342.1 BnaC02g03350D [Brassica napus])

HSP 1 Score: 122 bits (305), Expect = 6.870e-29
Identity = 72/172 (41.86%), Postives = 103/172 (59.88%), Query Frame = 0

Query:   43 GDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVD-EPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYG---IPTESFDWLWTSLLHG 210
            G T VFWD  DLP+A SFNP+ V  N+  +LA  K L GF +L ++C+ +L   D + ++Y +AR             + K  R K MI   LL+A D   C  D +PAN+VIVS+++S  P+ +++L+AL QRNF++LLV+  DE K K      I TE+ DWLW S++ G
Sbjct:   11 GYTGVFWDYDDLPIAGSFNPFDVHLNIKASLAK-KNLCGFFELSFYCDKELPVPDYLVQSYRKARLCF-------VPDVSKSLRAKIMIRDILLYAWDNNPCFNDGQPANLVIVSNTISQDPDMISVLQALNQRNFSVLLVRS-DELKHKAVDPGDIATENLDWLWQSIMFG 173

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7038227.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 124 bits (312), Expect = 1.200e-28
Identity = 74/158 (46.84%), Postives = 98/158 (62.03%), Query Frame = 0

Query:   56 VADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDART-CRVDEPANIVIVSDSVSDQPEFVNLLEAL-KQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGG 211
            +A  F P MV +NL  +LA  K + GF +L+Y+  D L   D +   Y++AR    T   GG     K+ARTK MI   LLWA D R  C V EPAN+V+VS+++S +PEFV +L+AL K++NF++LLVQ   +   K   IPTESF WLW SL  GG
Sbjct:    1 MAGYFTPIMVNYNLKASLAK-KNMFGFFELYYYA-DKLPVPDYLVRHYEDARLHLITSVVGGTSAEAKFARTKVMIRDILLWALDMRRDCNV-EPANLVVVSNNISPEPEFVAVLQALAKKKNFSVLLVQSSKDMYVKKVDIPTESFAWLWESLTGGG 155

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD18152.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 1.480e-28
Identity = 72/172 (41.86%), Postives = 103/172 (59.88%), Query Frame = 0

Query:   43 GDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVD-EPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYG---IPTESFDWLWTSLLHG 210
            G T VFWD  DLP+A SFNP+ V  N+  +LA  K L GF +L ++C+ +L   D + ++Y +AR             + K  R K MI   LL+A D   C  D +PAN+VIVS+++S  P+ +++L+AL QRNF++LLV+  DE K K      I TE+ DWLW S++ G
Sbjct:   44 GYTGVFWDYDDLPIAGSFNPFDVHLNIKASLAK-KNLCGFFELSFYCDKELPVPDYLVQSYRKARLCF-------VPDVSKSLRAKIMIRDILLYAWDNNPCFNDGQPANLVIVSNTISQDPDMISVLQALNQRNFSVLLVRS-DELKHKAVDPGDIATENLDWLWQSIMFG 206

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2560346.1 (hypothetical protein F2Q70_00013990 [Brassica cretica])

HSP 1 Score: 120 bits (302), Expect = 2.070e-28
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 0

Query:   43 GDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVD-EPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYG---IPTESFDWLWTSLLHG 210
            G T VFWD  DLP+A SFNP+ V  N+  +LA  K L GF +L ++C+ +L   D + ++Y +AR             + K  R K MI   LL+A D   C  D +PAN+VIVS+++S  P+ +++L+AL QRNF++LLV+  DE K K      I TE+ DWLW S + G
Sbjct:   11 GYTGVFWDYDDLPIAGSFNPFDVHLNIKASLAK-KNLCGFFELSFYCDKELPVPDYLVQSYRKARLCF-------VPDVSKSLRAKIMIRDILLYAWDNNPCFNDGQPANLVIVSNTISQDPDMISVLQALNQRNFSVLLVRS-DELKHKAVDPGDIATENLDWLWQSTMFG 173

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_022568407.1 (uncharacterized protein LOC106414899 [Brassica napus])

HSP 1 Score: 92.4 bits (228), Expect = 1.230e-16
Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 0

Query:   39 DYIVGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            D  +G T  FWD  DLP+ ++    NP ++   ++ AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D L+ S+L
Sbjct:    9 DSTLGYTGCFWDYRDLPIPETPHGINPSLIHLKVSDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDLLFQSML 166

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY10369.1 (BnaCnng02700D [Brassica napus])

HSP 1 Score: 91.7 bits (226), Expect = 1.720e-16
Identity = 62/170 (36.47%), Postives = 97/170 (57.06%), Query Frame = 0

Query:   42 VGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            +G T  FWD  DLP+ ++    NP ++   ++ AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D L+ S+L
Sbjct:   12 LGYTGCFWDYRDLPIPETPHGINPSLIHLKVSDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDLLFQSML 166

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BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34706.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 90.5 bits (223), Expect = 4.520e-16
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 0

Query:   39 DYIVGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            D  +G T  FWD  DLP+ ++    NP ++   +  AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D  + SLL
Sbjct:    9 DSTLGYTGCFWDYRDLPIPETPHGINPSLIHLKVLDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDVFFQSLL 166

[Close]

BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_022571380.1 (uncharacterized protein LOC111213821 [Brassica napus])

HSP 1 Score: 90.5 bits (223), Expect = 5.760e-16
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 0

Query:   39 DYIVGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            D  +G T  FWD  DLP+ ++    NP ++   +  AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D  + SLL
Sbjct:    9 DSTLGYTGCFWDYRDLPIPETPHGINPSLIHLKVLDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDVFFQSLL 166

The following BLAST results are available for this feature:

BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 15


Match Name	E-value	Identity	Description
XP_013730130.1	2.720e-228	100.00	uncharacterized protein LOC106433847 [Brassica nap...	[more]
VDD34709.1	1.510e-227	100.00	unnamed protein product, partial [Brassica olerace...	[more]
XP_013619226.1	6.870e-29	41.86	PREDICTED: uncharacterized protein LOC106325715 [B...	[more]
CAA7038227.1	1.200e-28	46.84	unnamed protein product [Microthlaspi erraticum]	[more]
VDD18152.1	1.480e-28	41.86	unnamed protein product, partial [Brassica olerace...	[more]
KAF2560346.1	2.070e-28	41.86	hypothetical protein F2Q70_00013990 [Brassica cret...	[more]
XP_022568407.1	1.230e-16	36.42	uncharacterized protein LOC106414899 [Brassica nap...	[more]
CDY10369.1	1.720e-16	36.47	BnaCnng02700D [Brassica napus]	[more]
VDD34706.1	4.520e-16	36.42	unnamed protein product [Brassica oleracea]	[more]
XP_022571380.1	5.760e-16	36.42	uncharacterized protein LOC111213821 [Brassica nap...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005777	peroxisome

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..261
None	No IPR available	COILS	Coil	Coil	coord: 308..361
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR024768	Meiosis regulator and mRNA stability factor 1	PANTHER	PTHR14379	LIMKAIN B LKAP	coord: 15..236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:64237523..64239288 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p72960.1_BnaDARv10-RA	C09p72960.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 64236621..64239478 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p72960.1_BnaDARv10-PA ID=C09p72960.1_BnaDARv10-PA|Name=C09p72960.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=369bp
MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWD
GFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMR
EAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPA
NIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESF
DWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEA
LDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTS
KAFKALFKKALAEEARVKKARAKKARAKKEAVKSLKEVARAKEIEARKAE
ARAKKALAKEKLLKILSM.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024768	Marf1

Vocabulary: **Biological Process**
Term	Definition
GO:0010468	regulation of gene expression

Vocabulary: **Cellular Component**
Term	Definition
GO:0005777	peroxisome

Orthology

View orthology data for C09p72960.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p72960.1_BnaDARv10-PA