C09p72960.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p72960.1_BnaDARv10-RA
Unique NameC09p72960.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length369
Homology
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013730130.1 (uncharacterized protein LOC106433847 [Brassica napus])

HSP 1 Score: 635 bits (1639), Expect = 2.720e-228
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0
Query:    1 MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 368
            MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM
Sbjct:    1 MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 368          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34709.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 634 bits (1634), Expect = 1.510e-227
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0
Query:    2 DSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 368
            DSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM
Sbjct:    1 DSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEALDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTSKAFKALFKKXXXXXXXXXXXXXXXXXXXXXAVKSLKEVARAKEIXXXXXXXXXXXXXXXXKLLKILSM 367          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013619226.1 (PREDICTED: uncharacterized protein LOC106325715 [Brassica oleracea var. oleracea] >XP_013654672.1 uncharacterized protein BNAC02G03350D [Brassica napus] >CDY44342.1 BnaC02g03350D [Brassica napus])

HSP 1 Score: 122 bits (305), Expect = 6.870e-29
Identity = 72/172 (41.86%), Postives = 103/172 (59.88%), Query Frame = 0
Query:   43 GDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVD-EPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYG---IPTESFDWLWTSLLHG 210
            G T VFWD  DLP+A SFNP+ V  N+  +LA  K L GF +L ++C+ +L   D + ++Y +AR             + K  R K MI   LL+A D   C  D +PAN+VIVS+++S  P+ +++L+AL QRNF++LLV+  DE K K      I TE+ DWLW S++ G
Sbjct:   11 GYTGVFWDYDDLPIAGSFNPFDVHLNIKASLAK-KNLCGFFELSFYCDKELPVPDYLVQSYRKARLCF-------VPDVSKSLRAKIMIRDILLYAWDNNPCFNDGQPANLVIVSNTISQDPDMISVLQALNQRNFSVLLVRS-DELKHKAVDPGDIATENLDWLWQSIMFG 173          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7038227.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 124 bits (312), Expect = 1.200e-28
Identity = 74/158 (46.84%), Postives = 98/158 (62.03%), Query Frame = 0
Query:   56 VADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDART-CRVDEPANIVIVSDSVSDQPEFVNLLEAL-KQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLLHGG 211
            +A  F P MV +NL  +LA  K + GF +L+Y+  D L   D +   Y++AR    T   GG     K+ARTK MI   LLWA D R  C V EPAN+V+VS+++S +PEFV +L+AL K++NF++LLVQ   +   K   IPTESF WLW SL  GG
Sbjct:    1 MAGYFTPIMVNYNLKASLAK-KNMFGFFELYYYA-DKLPVPDYLVRHYEDARLHLITSVVGGTSAEAKFARTKVMIRDILLWALDMRRDCNV-EPANLVVVSNNISPEPEFVAVLQALAKKKNFSVLLVQSSKDMYVKKVDIPTESFAWLWESLTGGG 155          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD18152.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 1.480e-28
Identity = 72/172 (41.86%), Postives = 103/172 (59.88%), Query Frame = 0
Query:   43 GDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVD-EPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYG---IPTESFDWLWTSLLHG 210
            G T VFWD  DLP+A SFNP+ V  N+  +LA  K L GF +L ++C+ +L   D + ++Y +AR             + K  R K MI   LL+A D   C  D +PAN+VIVS+++S  P+ +++L+AL QRNF++LLV+  DE K K      I TE+ DWLW S++ G
Sbjct:   44 GYTGVFWDYDDLPIAGSFNPFDVHLNIKASLAK-KNLCGFFELSFYCDKELPVPDYLVQSYRKARLCF-------VPDVSKSLRAKIMIRDILLYAWDNNPCFNDGQPANLVIVSNTISQDPDMISVLQALNQRNFSVLLVRS-DELKHKAVDPGDIATENLDWLWQSIMFG 206          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2560346.1 (hypothetical protein F2Q70_00013990 [Brassica cretica])

HSP 1 Score: 120 bits (302), Expect = 2.070e-28
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 0
Query:   43 GDTVVFWDGFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVD-EPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYG---IPTESFDWLWTSLLHG 210
            G T VFWD  DLP+A SFNP+ V  N+  +LA  K L GF +L ++C+ +L   D + ++Y +AR             + K  R K MI   LL+A D   C  D +PAN+VIVS+++S  P+ +++L+AL QRNF++LLV+  DE K K      I TE+ DWLW S + G
Sbjct:   11 GYTGVFWDYDDLPIAGSFNPFDVHLNIKASLAK-KNLCGFFELSFYCDKELPVPDYLVQSYRKARLCF-------VPDVSKSLRAKIMIRDILLYAWDNNPCFNDGQPANLVIVSNTISQDPDMISVLQALNQRNFSVLLVRS-DELKHKAVDPGDIATENLDWLWQSTMFG 173          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_022568407.1 (uncharacterized protein LOC106414899 [Brassica napus])

HSP 1 Score: 92.4 bits (228), Expect = 1.230e-16
Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 0
Query:   39 DYIVGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            D  +G T  FWD  DLP+ ++    NP ++   ++ AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D L+ S+L
Sbjct:    9 DSTLGYTGCFWDYRDLPIPETPHGINPSLIHLKVSDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDLLFQSML 166          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY10369.1 (BnaCnng02700D [Brassica napus])

HSP 1 Score: 91.7 bits (226), Expect = 1.720e-16
Identity = 62/170 (36.47%), Postives = 97/170 (57.06%), Query Frame = 0
Query:   42 VGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            +G T  FWD  DLP+ ++    NP ++   ++ AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D L+ S+L
Sbjct:   12 LGYTGCFWDYRDLPIPETPHGINPSLIHLKVSDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDLLFQSML 166          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34706.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 90.5 bits (223), Expect = 4.520e-16
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 0
Query:   39 DYIVGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            D  +G T  FWD  DLP+ ++    NP ++   +  AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D  + SLL
Sbjct:    9 DSTLGYTGCFWDYRDLPIPETPHGINPSLIHLKVLDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDVFFQSLL 166          
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_022571380.1 (uncharacterized protein LOC111213821 [Brassica napus])

HSP 1 Score: 90.5 bits (223), Expect = 5.760e-16
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 0
Query:   39 DYIVGDTVVFWDGFDLPVADS---FNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMREAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPANIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESFDWLWTSLL 208
            D  +G T  FWD  DLP+ ++    NP ++   +  AL + K L+G L +++F E  +I+D+     ++EA+ F   G      P  +  R K MI + L +A D   C  DE  N+V+VS+++S +PE V +L+AL+ RN N+LLVQ  +  K     IPT S D  + SLL
Sbjct:    9 DSTLGYTGCFWDYRDLPIPETPHGINPSLIHLKVLDALES-KLLLGHLAIWFFAEKPIIQDN-----FEEAQLFFPEGV-----PKDESERAKMMIKAILFFALDKDGCG-DEHNNLVVVSNTISLEPELVGVLKALEFRNHNVLLVQSDEANK---VNIPTLSLDVFFQSLL 166          
The following BLAST results are available for this feature:
BLAST of C09p72960.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 15
Match NameE-valueIdentityDescription
XP_013730130.12.720e-228100.00uncharacterized protein LOC106433847 [Brassica nap... [more]
VDD34709.11.510e-227100.00unnamed protein product, partial [Brassica olerace... [more]
XP_013619226.16.870e-2941.86PREDICTED: uncharacterized protein LOC106325715 [B... [more]
CAA7038227.11.200e-2846.84unnamed protein product [Microthlaspi erraticum][more]
VDD18152.11.480e-2841.86unnamed protein product, partial [Brassica olerace... [more]
KAF2560346.12.070e-2841.86hypothetical protein F2Q70_00013990 [Brassica cret... [more]
XP_022568407.11.230e-1636.42uncharacterized protein LOC106414899 [Brassica nap... [more]
CDY10369.11.720e-1636.47BnaCnng02700D [Brassica napus][more]
VDD34706.14.520e-1636.42unnamed protein product [Brassica oleracea][more]
XP_022571380.15.760e-1636.42uncharacterized protein LOC111213821 [Brassica nap... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010468 regulation of gene expression
cellular_component GO:0005777 peroxisome
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableCOILSCoilCoilcoord: 308..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
IPR024768Meiosis regulator and mRNA stability factor 1PANTHERPTHR14379LIMKAIN B LKAPcoord: 15..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:64237523..64239288 +    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p72960.1_BnaDARv10-RAC09p72960.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 64236621..64239478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p72960.1_BnaDARv10-PA ID=C09p72960.1_BnaDARv10-PA|Name=C09p72960.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=369bp
MDSKKKSPSSTSSGETSDEAMSGDDRSVKVPKDLSSHPDYIVGDTVVFWD
GFDLPVADSFNPYMVVWNLTKALATTKKLVGFLKLFYFCEDDLIKDDDMR
EAYDEARFFTETGYRGGYDPLCKYARTKSMIASALLWAGDARTCRVDEPA
NIVIVSDSVSDQPEFVNLLEALKQRNFNILLVQQHDEEKEKLYGIPTESF
DWLWTSLLHGGTSQGVNRSDSSSTCGDGVPLSRKEDFYKEIEALDQAGEA
LDQDKEALESLTSVEVELYDPSKEVEAKIEALAKALFGAIELKDVEHGTS
KAFKALFKKALAEEARVKKARAKKARAKKEAVKSLKEVARAKEIEARKAE
ARAKKALAKEKLLKILSM.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024768Marf1
Vocabulary: Biological Process
TermDefinition
GO:0010468regulation of gene expression
Vocabulary: Cellular Component
TermDefinition
GO:0005777peroxisome