C09p72310.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p72310.1_BnaDARv10-RA
Unique NameC09p72310.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length250
Homology
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013729433.1 (uncharacterized protein BNAC09G50560D [Brassica napus] >KAF3499803.1 hypothetical protein F2Q69_00045594 [Brassica cretica] >CDY44856.1 BnaC09g50560D [Brassica napus] >VDD34652.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 433 bits (1113), Expect = 4.120e-152
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122596.1 (uncharacterized protein SYNPCC7002_A1590 [Brassica rapa] >XP_013668187.1 uncharacterized protein LOC106372510 [Brassica napus] >RID42882.1 hypothetical protein BRARA_J02737 [Brassica rapa] >VDD21091.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 414 bits (1063), Expect = 1.970e-144
Identity = 223/253 (88.14%), Postives = 223/253 (88.14%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKKTNRNP---SLSFTITCSSSFDEPPKPSLTSSS-TPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATLKL SLSFSAKKTNRNP   SLSFTITCSSSFDEPPKPSLTSSS TPNRVSS S PKARFVARQKQS                     SVLDAERI RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGS EQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLKLTSLSFSAKKTNRNPRNRSLSFTITCSSSFDEPPKPSLTSSSSTPNRVSSSSAPKARFVARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSLEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 253          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013588592.1 (PREDICTED: uncharacterized protein SYNPCC7002_A1590-like [Brassica oleracea var. oleracea] >XP_013607054.1 PREDICTED: uncharacterized protein SYNPCC7002_A1590-like [Brassica oleracea var. oleracea])

HSP 1 Score: 404 bits (1038), Expect = 1.100e-140
Identity = 236/249 (94.78%), Postives = 236/249 (94.78%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTPNRV  X     RFV      XXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTPNRVXXXXXXXXRFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_002871094.1 (uncharacterized protein LOC9309219 [Arabidopsis lyrata subsp. lyrata] >EFH47353.1 hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 403 bits (1035), Expect = 3.510e-140
Identity = 214/252 (84.92%), Postives = 220/252 (87.30%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKKTNRNP---SLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATL+L SLSFSAKKTNRNP   SLSFTI+ SSSFDEPPKPSL SS+ P RVSS S PKARF+ARQKQS                     SVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCD TQEG+SEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQIL+LMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLRLTSLSFSAKKTNRNPRNPSLSFTISSSSSFDEPPKPSLASSTPPIRVSSSSTPKARFIARQKQSISVRQLQRPLIEYMSLPASQYSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGTSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 252          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018445924.1 (PREDICTED: uncharacterized protein LOC108817669 [Raphanus sativus])

HSP 1 Score: 394 bits (1011), Expect = 1.640e-136
Identity = 216/253 (85.38%), Postives = 217/253 (85.77%), Query Frame = 0
Query:    1 MALSSA-TLKLASLSFSAKKTNRNPSLSFTITCSSS--FDEPPKPSLTSSSTPNRVSSXSD-PKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSA TLKL SLSFSAKK  RNPSLSFTI CSSS  FDEPPKPSLTSS+ P RVSS S  PKARFVARQKQS                     SVLDAERI RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQ NGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCD TQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSAATLKLTSLSFSAKKKTRNPSLSFTINCSSSSSFDEPPKPSLTSSTPPIRVSSSSSSPKARFVARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQTNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 253          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: NP_196064.2 (RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [Arabidopsis thaliana] >AAY34156.1 At5g04440 [Arabidopsis thaliana] >ABD19663.1 At5g04440 [Arabidopsis thaliana] >AED90745.1 RAP release 2, galactose-binding-like domain protein, putative (DUF1997) [Arabidopsis thaliana] >OAO94709.1 hypothetical protein AXX17_AT5G03880 [Arabidopsis thaliana] >CAA0400615.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 391 bits (1004), Expect = 2.050e-135
Identity = 214/255 (83.92%), Postives = 218/255 (85.49%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKKTNRNP---SLSFTITCSSSFDEPPKPS--LTSSST-PNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATL+L SLSFSAKKTNRNP   +LSFTIT SSSFDE PKPS   TSSST P RVSS S PKARF+ARQKQS                     SVLDAERI RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCD TQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQIL+LMLPRFLSQLSKDY AWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLRLTSLSFSAKKTNRNPRNPALSFTITSSSSFDESPKPSSLATSSSTSPIRVSSSSTPKARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSKDYHAWASGDTSRQPLGTGEI 255          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006398904.1 (uncharacterized protein LOC18019371 [Eutrema salsugineum] >ESQ40357.1 hypothetical protein EUTSA_v10014494mg [Eutrema salsugineum])

HSP 1 Score: 390 bits (1001), Expect = 4.920e-135
Identity = 213/252 (84.52%), Postives = 217/252 (86.11%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKKTNRN---PSLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATL+   LSFSAKKTNRN   PSLSF ITCSSSFDEP KPS +SS+ P RVSS + PKARFVARQKQS                     SVLDAERI RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLR-PFLSFSAKKTNRNIRNPSLSFAITCSSSFDEPSKPS-SSSTPPIRVSSSAAPKARFVARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 250          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: VVB13202.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 388 bits (997), Expect = 2.480e-134
Identity = 215/256 (83.98%), Postives = 217/256 (84.77%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKK-TNRNP---SLSFTITCSSS-FDEPPKPSLTSSST--PNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSATLK  SLSFS KK TNRNP   SLSF ITCSSS FDEPPKPSL SSST  P RVSS S PKARFVARQKQS                     SVLDAERI RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCD  +EGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQIL+LMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATLKPTSLSFSTKKKTNRNPKNPSLSFAITCSSSSFDEPPKPSLASSSTTPPIRVSSSSSPKARFVARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSIREGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 256          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: CAA7033929.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 385 bits (990), Expect = 2.680e-133
Identity = 208/254 (81.89%), Postives = 215/254 (84.65%), Query Frame = 0
Query:    1 MALSSATLKLASLSFSAKK-TNRNPSLSFTITCSSSFDEPPKPSLTSSST----PNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSAT +L SLSFSAKK TNRNP LSF ITCSSS+DE PKPS  +SS+    P RVSS S PKARFV+R KQS                     SVLDAERI R+DDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCD T+EGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSATHRLTSLSFSAKKKTNRNPPLSFAITCSSSYDESPKPSSLASSSSSTPPIRVSSSSVPKARFVSRHKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERIDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTEEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 254          
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_010452341.1 (PREDICTED: uncharacterized protein LOC104734455 [Camelina sativa])

HSP 1 Score: 384 bits (986), Expect = 1.050e-132
Identity = 210/255 (82.35%), Postives = 215/255 (84.31%), Query Frame = 0
Query:    1 MALSSATLK---LASLSFSAKKTNRNP---SLSFTITCSSSFDEPPKPSLTSSSTPNRVSSXSDPKARFVARQKQSXXXXXXXXXXXXXXXXXXXXXSVLDAERIVRVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFPVGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 249
            MALSSA+L      SLS SAKKTNRNP   SLSFTIT SSSFDEPPKPS  SS+ P RVSS S PKARF+ARQKQS                     SVLDAERI RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCD TQEG+SEQQITSDAVIEVNIEIPFAFRVFPVGA+EATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI
Sbjct:    1 MALSSASLSRLTTTSLSLSAKKTNRNPRNPSLSFTITSSSSFDEPPKPS--SSTPPIRVSSSSVPKARFIARQKQSISVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGTSEQQITSDAVIEVNIEIPFAFRVFPVGAVEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI 253          
The following BLAST results are available for this feature:
BLAST of C09p72310.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013729433.14.120e-152100.00uncharacterized protein BNAC09G50560D [Brassica na... [more]
XP_009122596.11.970e-14488.14uncharacterized protein SYNPCC7002_A1590 [Brassica... [more]
XP_013588592.11.100e-14094.78PREDICTED: uncharacterized protein SYNPCC7002_A159... [more]
XP_002871094.13.510e-14084.92uncharacterized protein LOC9309219 [Arabidopsis ly... [more]
XP_018445924.11.640e-13685.38PREDICTED: uncharacterized protein LOC108817669 [R... [more]
NP_196064.22.050e-13583.92RAP release 2, galactose-binding-like domain prote... [more]
XP_006398904.14.920e-13584.52uncharacterized protein LOC18019371 [Eutrema salsu... [more]
VVB13202.12.480e-13483.98unnamed protein product [Arabis nemorensis][more]
CAA7033929.12.680e-13381.89unnamed protein product [Microthlaspi erraticum][more]
XP_010452341.11.050e-13282.35PREDICTED: uncharacterized protein LOC104734455 [C... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018971Protein of unknown function DUF1997PFAMPF09366DUF1997coord: 80..235
e-value: 3.7E-44
score: 150.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..60
NoneNo IPR availablePANTHERPTHR34131:SF3(RAP ANNOTATION RELEASE2) GALACTOSE-BINDING LIKE DOMAIN CONTAINING PROTEINcoord: 19..243
NoneNo IPR availablePANTHERPTHR34131FAMILY NOT NAMEDcoord: 19..243
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..249
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..16
score: 0.506

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:63776430..63777813 -    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p72310.1_BnaDARv10-RAC09p72310.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 63776192..63777893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p72310.1_BnaDARv10-PA ID=C09p72310.1_BnaDARv10-PA|Name=C09p72310.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=250bp
MALSSATLKLASLSFSAKKTNRNPSLSFTITCSSSFDEPPKPSLTSSSTP
NRVSSSSDPKARFVARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIV
RVDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKLEGSPV
VVAQNDKFDASMVNRVSCDGTQEGSSEQQITSDAVIEVNIEIPFAFRVFP
VGAIEATGTQVLDQILRLMLPRFLSQLSKDYQAWASGDTSRQPLGTGEI.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018971DUF1997
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast