C09p72050.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p72050.1_BnaDARv10-RA
Unique Name	C09p72050.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	209

Homology

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3504711.1 (hypothetical protein F2Q69_00045627 [Brassica cretica])

HSP 1 Score: 402 bits (1033), Expect = 2.720e-141
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0

Query:   11 DLVVDESYMFYRCLLDESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DLVVDESYMFYR LLDE+GAEMDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DLVVDESYMFYRRLLDEAGAEMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 207

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013729403.1 (uncharacterized protein LOC106433106 [Brassica napus])

HSP 1 Score: 381 bits (979), Expect = 2.720e-133
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 192

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013610399.1 (PREDICTED: uncharacterized protein LOC106317086 [Brassica oleracea var. oleracea])

HSP 1 Score: 377 bits (969), Expect = 9.110e-132
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACEL+QRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELKQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 192

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY44882.1 (BnaC09g50820D [Brassica napus])

HSP 1 Score: 374 bits (960), Expect = 2.850e-130
Identity = 183/191 (95.81%), Postives = 183/191 (95.81%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE--------ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE        ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEETTYGTKQILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 200

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013715398.1 (uncharacterized protein BNAA10G25480D [Brassica napus] >RID42858.1 hypothetical protein BRARA_J02715 [Brassica rapa])

HSP 1 Score: 370 bits (950), Expect = 7.180e-129
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GA MDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNI MISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DEAGATMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIQMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 192

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34627.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 370 bits (950), Expect = 9.540e-129
Identity = 181/191 (94.76%), Postives = 182/191 (95.29%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE--------ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACEL+QRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE        ILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELKQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEETTYGTKQILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 200

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122565.2 (uncharacterized protein LOC103847261 [Brassica rapa])

HSP 1 Score: 370 bits (950), Expect = 3.940e-128
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GA MDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNI MISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   58 DEAGATMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIQMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 240

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD21038.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 363 bits (931), Expect = 7.510e-126
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE--------ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GA MDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE        ILIDNKQHYKLLGKNI MISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DEAGATMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEETTYGTKQILIDNKQHYKLLGKNIQMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 200

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2538974.1 (hypothetical protein F2Q68_00023361 [Brassica cretica] >KAF2572460.1 hypothetical protein F2Q70_00006687 [Brassica cretica])

HSP 1 Score: 359 bits (922), Expect = 3.000e-124
Identity = 178/206 (86.41%), Postives = 180/206 (87.38%), Query Frame = 0

Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNL-----------------------YGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GAE+DPAWEC GKGACELRQRRFADTIMPHILN                        YGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DEAGAEIDPAWECEGKGACELRQRRFADTIMPHILNFSVYSLPVPCITSSFICWQIAAHWYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 215

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BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018444216.1 (PREDICTED: uncharacterized protein LOC108816146 [Raphanus sativus])

HSP 1 Score: 350 bits (898), Expect = 3.280e-120
Identity = 169/184 (91.85%), Postives = 172/184 (93.48%), Query Frame = 0

Query:   25 LDESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            ++   A  DP WEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYA NASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQES IAPGKKEILIDNKQHYKLLGKNI MISLIKLY EN+KIVRHEDWWDKKPLRNRDTVSFPLVGR MEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   57 VETGAAATDPVWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYALNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESDIAPGKKEILIDNKQHYKLLGKNIQMISLIKLYVENNKIVRHEDWWDKKPLRNRDTVSFPLVGRAMEMGRRGLMLATHAMMGFGKDPSSH 240

The following BLAST results are available for this feature:

BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
KAF3504711.1	2.720e-141	97.98	hypothetical protein F2Q69_00045627 [Brassica cret...	[more]
XP_013729403.1	2.720e-133	100.00	uncharacterized protein LOC106433106 [Brassica nap...	[more]
XP_013610399.1	9.110e-132	98.91	PREDICTED: uncharacterized protein LOC106317086 [B...	[more]
CDY44882.1	2.850e-130	95.81	BnaC09g50820D [Brassica napus]	[more]
XP_013715398.1	7.180e-129	97.27	uncharacterized protein BNAA10G25480D [Brassica na...	[more]
VDD34627.1	9.540e-129	94.76	unnamed protein product [Brassica oleracea]	[more]
XP_009122565.2	3.940e-128	97.27	uncharacterized protein LOC103847261 [Brassica rap...	[more]
VDD21038.1	7.510e-126	93.19	unnamed protein product [Brassica rapa]	[more]
KAF2538974.1	3.000e-124	86.41	hypothetical protein F2Q68_00023361 [Brassica cret...	[more]
XP_018444216.1	3.280e-120	91.85	PREDICTED: uncharacterized protein LOC108816146 [R...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34213	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN	coord: 28..208
None	No IPR available	PANTHER	PTHR34213:SF3	BNAA03G01470D PROTEIN	coord: 28..208
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..15
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 16..208
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..10
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 11..15
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.496
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 56..169

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:63641141..63642586 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p72050.1_BnaDARv10-RA	C09p72050.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 63641141..63642718 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p72050.1_BnaDARv10-PA ID=C09p72050.1_BnaDARv10-PA|Name=C09p72050.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=209bp
MRRLFIFFFLDLVVDESYMFYRCLLDESGAEMDPAWECAGKGACELRQRR
FADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYS
LSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKL
YFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMG
FGKDPSSH.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032710	NTF2-like_dom_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for C09p72050.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p72050.1_BnaDARv10-PA