C09p72050.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p72050.1_BnaDARv10-RA
Unique NameC09p72050.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length209
Homology
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3504711.1 (hypothetical protein F2Q69_00045627 [Brassica cretica])

HSP 1 Score: 402 bits (1033), Expect = 2.720e-141
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0
Query:   11 DLVVDESYMFYRCLLDESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DLVVDESYMFYR LLDE+GAEMDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DLVVDESYMFYRRLLDEAGAEMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 207          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013729403.1 (uncharacterized protein LOC106433106 [Brassica napus])

HSP 1 Score: 381 bits (979), Expect = 2.720e-133
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 192          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013610399.1 (PREDICTED: uncharacterized protein LOC106317086 [Brassica oleracea var. oleracea])

HSP 1 Score: 377 bits (969), Expect = 9.110e-132
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACEL+QRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELKQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 192          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY44882.1 (BnaC09g50820D [Brassica napus])

HSP 1 Score: 374 bits (960), Expect = 2.850e-130
Identity = 183/191 (95.81%), Postives = 183/191 (95.81%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE--------ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE        ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEETTYGTKQILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 200          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013715398.1 (uncharacterized protein BNAA10G25480D [Brassica napus] >RID42858.1 hypothetical protein BRARA_J02715 [Brassica rapa])

HSP 1 Score: 370 bits (950), Expect = 7.180e-129
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GA MDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNI MISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DEAGATMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIQMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 192          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34627.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 370 bits (950), Expect = 9.540e-129
Identity = 181/191 (94.76%), Postives = 182/191 (95.29%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE--------ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DESGAEMDPAWECAGKGACEL+QRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE        ILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DESGAEMDPAWECAGKGACELKQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEETTYGTKQILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 200          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009122565.2 (uncharacterized protein LOC103847261 [Brassica rapa])

HSP 1 Score: 370 bits (950), Expect = 3.940e-128
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GA MDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNI MISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   58 DEAGATMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIQMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 240          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD21038.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 363 bits (931), Expect = 7.510e-126
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE--------ILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GA MDPAWEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKE        ILIDNKQHYKLLGKNI MISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DEAGATMDPAWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEETTYGTKQILIDNKQHYKLLGKNIQMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 200          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2538974.1 (hypothetical protein F2Q68_00023361 [Brassica cretica] >KAF2572460.1 hypothetical protein F2Q70_00006687 [Brassica cretica])

HSP 1 Score: 359 bits (922), Expect = 3.000e-124
Identity = 178/206 (86.41%), Postives = 180/206 (87.38%), Query Frame = 0
Query:   26 DESGAEMDPAWECAGKGACELRQRRFADTIMPHILNL-----------------------YGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            DE+GAE+DPAWEC GKGACELRQRRFADTIMPHILN                        YGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLY ENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   10 DEAGAEIDPAWECEGKGACELRQRRFADTIMPHILNFSVYSLPVPCITSSFICWQIAAHWYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYVENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 215          
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018444216.1 (PREDICTED: uncharacterized protein LOC108816146 [Raphanus sativus])

HSP 1 Score: 350 bits (898), Expect = 3.280e-120
Identity = 169/184 (91.85%), Postives = 172/184 (93.48%), Query Frame = 0
Query:   25 LDESGAEMDPAWECAGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKLYFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMGFGKDPSSH 208
            ++   A  DP WEC GKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYA NASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQES IAPGKKEILIDNKQHYKLLGKNI MISLIKLY EN+KIVRHEDWWDKKPLRNRDTVSFPLVGR MEMGRRGLMLATHAMMGFGKDPSSH
Sbjct:   57 VETGAAATDPVWECEGKGACELRQRRFADTIMPHILNLYGSCAKAKDFDMYALNASFEDPLTHAQGVKQIKSAFYSLSKVFGESKIVEYHIQESDIAPGKKEILIDNKQHYKLLGKNIQMISLIKLYVENNKIVRHEDWWDKKPLRNRDTVSFPLVGRAMEMGRRGLMLATHAMMGFGKDPSSH 240          
The following BLAST results are available for this feature:
BLAST of C09p72050.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
KAF3504711.12.720e-14197.98hypothetical protein F2Q69_00045627 [Brassica cret... [more]
XP_013729403.12.720e-133100.00uncharacterized protein LOC106433106 [Brassica nap... [more]
XP_013610399.19.110e-13298.91PREDICTED: uncharacterized protein LOC106317086 [B... [more]
CDY44882.12.850e-13095.81BnaC09g50820D [Brassica napus][more]
XP_013715398.17.180e-12997.27uncharacterized protein BNAA10G25480D [Brassica na... [more]
VDD34627.19.540e-12994.76unnamed protein product [Brassica oleracea][more]
XP_009122565.23.940e-12897.27uncharacterized protein LOC103847261 [Brassica rap... [more]
VDD21038.17.510e-12693.19unnamed protein product [Brassica rapa][more]
KAF2538974.13.000e-12486.41hypothetical protein F2Q68_00023361 [Brassica cret... [more]
XP_018444216.13.280e-12091.85PREDICTED: uncharacterized protein LOC108816146 [R... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34213NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 28..208
NoneNo IPR availablePANTHERPTHR34213:SF3BNAA03G01470D PROTEINcoord: 28..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.496
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 56..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:63641141..63642586 +    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p72050.1_BnaDARv10-RAC09p72050.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 63641141..63642718 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p72050.1_BnaDARv10-PA ID=C09p72050.1_BnaDARv10-PA|Name=C09p72050.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=209bp
MRRLFIFFFLDLVVDESYMFYRCLLDESGAEMDPAWECAGKGACELRQRR
FADTIMPHILNLYGSCAKAKDFDMYAPNASFEDPLTHAQGVKQIKSAFYS
LSKVFGESKIVEYHIQESVIAPGKKEILIDNKQHYKLLGKNIHMISLIKL
YFENDKIVRHEDWWDKKPLRNRDTVSFPLVGRVMEMGRRGLMLATHAMMG
FGKDPSSH.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane