C09p66600.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p66600.1_BnaDARv10-RA
Unique Name	C09p66600.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	224

Homology

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BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34120.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 426 bits (1095), Expect = 3.370e-150
Identity = 219/225 (97.33%), Postives = 219/225 (97.33%), Query Frame = 0

Query:    1 MKTILKIRAKYGLPLDGKKIAEVQKGFG--HAAASSGNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINLICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLFPSLNDPVDAEFSLGSDVLL 223
            MKTILKIRAKYGLPLDGKKIAEVQKG    HAAASSGNPHHQVIFPCLFHVMFLVGTTMSYSLSNGIN ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGDKD DVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLFPSLNDPVDAEFSLGSDVLL
Sbjct:    1 MKTILKIRAKYGLPLDGKKIAEVQKGLNREHAAASSGNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINFICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGDKDADVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLFPSLNDPVDAEFSLGSDVLL 225

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BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2572498.1 (hypothetical protein F2Q70_00005819 [Brassica cretica])

HSP 1 Score: 199 bits (506), Expect = 7.980e-60
Identity = 125/208 (60.10%), Postives = 131/208 (62.98%), Query Frame = 0

Query:    1 MKTILKIRAKYGLPLDGKKIAEVQK----------------------GFG------HAAASSGNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINLICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRD 180
            MKTILKIRAKYGLPLDGKKIAEVQK                      G G      HAAASSGNPHHQ +                                 +   R YSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGDKD DVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRT L T   ++ S  +S +D
Sbjct:   79 MKTILKIRAKYGLPLDGKKIAEVQKSLVSCHRCFIYLGDLARYKGLYGEGDSKNREHAAASSGNPHHQWL---------------------------------SVIERSYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGDKDADVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTRLVTL--LIFSVDNSKKD 251

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BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: ALL27073.1 (C9.SMG7b [Brassica napus])

HSP 1 Score: 192 bits (487), Expect = 3.160e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query:   97 RIVPNLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFW 193
            RIVPNLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFW
Sbjct:   22 RIVPNLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFW 118

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BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013708631.1 (protein SMG7-like [Brassica napus] >XP_013708632.1 protein SMG7-like [Brassica napus] >XP_013708954.1 protein SMG7-like [Brassica napus] >XP_013708955.1 protein SMG7-like [Brassica napus] >XP_022555583.1 protein SMG7-like [Brassica napus] >ALL27074.1 C9.SMG7c [Brassica napus])

HSP 1 Score: 189 bits (481), Expect = 2.570e-58
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0

Query:   97 RIVPNLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFW 193
            RIVPNLFTAPKDSSRRPTGKRRGKGGDKD DVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFW
Sbjct:   22 RIVPNLFTAPKDSSRRPTGKRRGKGGDKDADVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFW 118

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BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018443950.1 (PREDICTED: protein SMG7 [Raphanus sativus] >XP_018443951.1 PREDICTED: protein SMG7 [Raphanus sativus])

HSP 1 Score: 178 bits (451), Expect = 1.730e-47
Identity = 133/264 (50.38%), Postives = 146/264 (55.30%), Query Frame = 0

Query:    2 KTILKIRAKYGLPL------------DGKKIAEVQKG--------------------FG--------HAAASS------------GNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINL---ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPK--DSSRRPTGKRRGKGGD----KDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLF 204
            + ILKIRAKYGLPL            DGKKIAEVQKG                    +G        HAAASS            GNPHHQ+     +       T   Y  S  +        DNLIVAFE    S+                 LFTAPK  DSSRRPTGKRRGKGGD    K+ DV AVPEKDKVTSADEMLKAFC++FVRLNGILFTRTSLETFSDVL STSSSLRDLI SSL E+MIF  +  + D +LF
Sbjct:  134 EMILKIRAKYGLPLGYFQDSQNLADKDGKKIAEVQKGLVSCHRCLIYLGDLARYKGLYGEGDSKNREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT-YRYFRSLAVETPFPTARDNLIVAFEKNRQSY---------------AQLFTAPKAKDSSRRPTGKRRGKGGDISSKKEADVAAVPEKDKVTSADEMLKAFCIRFVRLNGILFTRTSLETFSDVLASTSSSLRDLISSSLKEEMIFGKD--TSDSALF 379

[Close]

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009120890.1 (protein SMG7 [Brassica rapa] >XP_013667369.1 protein SMG7-like [Brassica napus])

HSP 1 Score: 168 bits (425), Expect = 5.630e-44
Identity = 127/265 (47.92%), Postives = 139/265 (52.45%), Query Frame = 0

Query:    2 KTILKIRAKYGLPL---------------DGKKIAEVQKG--------------------FG--------HAAASS------------GNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINL---ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGD----KDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLF 204
            + ILKIR+KYGLPL               DGKK AEVQKG                    +G        HAAASS            GNPHHQ+     +       T   Y  S  +        DNLIVAFE    S+                 LF APKDS RRPTGKRRGKG D    KD DVVA PEKDK TSADE LKAFCV+FVRLNGILFTRTSLETFSDVL STSSSLRDLI SSL E+M F  +  + D +LF
Sbjct:  132 EMILKIRSKYGLPLGYFSESQDSQNLADKDGKKFAEVQKGLVSCHRCLIYLGDLARYKGLYGEGDSKNREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT-YRYFRSLAVETPFPTARDNLIVAFEKNRLSY---------------AQLFAAPKDSPRRPTGKRRGKGQDNSSKKDADVVAAPEKDKATSADEKLKAFCVRFVRLNGILFTRTSLETFSDVLASTSSSLRDLISSSLKEEMSFGKD--TSDSALF 378

[Close]

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2572500.1 (hypothetical protein F2Q70_00005817 [Brassica cretica])

HSP 1 Score: 167 bits (422), Expect = 1.460e-43
Identity = 126/265 (47.55%), Postives = 140/265 (52.83%), Query Frame = 0

Query:    2 KTILKIRAKYGLPL---------------DGKKIAEVQKG--------------------FG--------HAAASS------------GNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINL---ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGD----KDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLF 204
            + ILKIR+KYGLPL               DGKK AEVQKG                    +G        HAAASS            GNPHHQ+     +       T   Y  S  +        DNLIVAFE    S+                 LF APKDS RRPTGKRRGKG D    KD DVVAVPEKDK TSADE LK+FCV+FVRLNGILFTRTSLETFSDVL STSSSL+DLI SSL E+M F  +  + D +LF
Sbjct:  375 EMILKIRSKYGLPLGYFSENQDSQNLADKDGKKFAEVQKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT-YRYFRSLAVETPFPTARDNLIVAFEKNRLSY---------------AQLFAAPKDSPRRPTGKRRGKGQDISSKKDADVVAVPEKDKATSADEKLKSFCVRFVRLNGILFTRTSLETFSDVLASTSSSLQDLISSSLKEEMSFGKD--TSDSALF 621

[Close]

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF2538621.1 (hypothetical protein F2Q68_00022357 [Brassica cretica])

HSP 1 Score: 167 bits (422), Expect = 1.560e-43
Identity = 126/265 (47.55%), Postives = 140/265 (52.83%), Query Frame = 0

Query:    2 KTILKIRAKYGLPL---------------DGKKIAEVQKG--------------------FG--------HAAASS------------GNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINL---ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGD----KDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLF 204
            + ILKIR+KYGLPL               DGKK AEVQKG                    +G        HAAASS            GNPHHQ+     +       T   Y  S  +        DNLIVAFE    S+                 LF APKDS RRPTGKRRGKG D    KD DVVAVPEKDK TSADE LK+FCV+FVRLNGILFTRTSLETFSDVL STSSSL+DLI SSL E+M F  +  + D +LF
Sbjct:  828 EMILKIRSKYGLPLGYFSENQDSQNLADKDGKKFAEVQKGLVSCHRCLIYLGDLARYKGLYGEGDSKSREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT-YRYFRSLAVETPFPTARDNLIVAFEKNRLSY---------------AQLFAAPKDSPRRPTGKRRGKGQDISSKKDADVVAVPEKDKATSADEKLKSFCVRFVRLNGILFTRTSLETFSDVLASTSSSLQDLISSSLKEEMSFGKD--TSDSALF 1074

[Close]

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: RID41711.1 (hypothetical protein BRARA_J01646 [Brassica rapa])

HSP 1 Score: 166 bits (421), Expect = 1.930e-43
Identity = 126/265 (47.55%), Postives = 139/265 (52.45%), Query Frame = 0

Query:    2 KTILKIRAKYGLPL---------------DGKKIAEVQKG--------------------FG--------HAAASS------------GNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINL---ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGD----KDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLF 204
            + ILKIR+KYGLPL               DGKK AEVQKG                    +G        HAAASS            GNPHHQ+     +       T   Y  S  +        DNLIVAFE    S+                 LF APK+S RRPTGKRRGKG D    KD DVVA PEKDK TSADE LKAFCV+FVRLNGILFTRTSLETFSDVL STSSSLRDLI SSL E+M F  +  + D +LF
Sbjct:  132 EMILKIRSKYGLPLGYFSENQDSQNLADKDGKKFAEVQKGLVSCHRCLIYLGDLARYKGLYGEGDSKNREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT-YRYFRSLAVETPFPTARDNLIVAFEKNRLSY---------------AQLFAAPKESPRRPTGKRRGKGQDNSSKKDADVVAAPEKDKATSADEKLKAFCVRFVRLNGILFTRTSLETFSDVLASTSSSLRDLISSSLKEEMSFGKD--TSDSALF 378

[Close]

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD18861.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 166 bits (421), Expect = 1.950e-43
Identity = 126/265 (47.55%), Postives = 139/265 (52.45%), Query Frame = 0

Query:    2 KTILKIRAKYGLPL---------------DGKKIAEVQKG--------------------FG--------HAAASS------------GNPHHQVIFPCLFHVMFLVGTTMSYSLSNGINL---ICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVPNLFTAPKDSSRRPTGKRRGKGGD----KDEDVVAVPEKDKVTSADEMLKAFCVKFVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHDRSLF 204
            + ILKIR+KYGLPL               DGKK AEVQKG                    +G        HAAASS            GNPHHQ+     +       T   Y  S  +        DNLIVAFE    S+                 LF APK+S RRPTGKRRGKG D    KD DVVA PEKDK TSADE LKAFCV+FVRLNGILFTRTSLETFSDVL STSSSLRDLI SSL E+M F  +  + D +LF
Sbjct:  132 ERILKIRSKYGLPLGYFSENQDSQNLADKDGKKFAEVQKGLVSCHRCLIYLGDLARYKGLYGEGDSKNREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT-YRYFRSLAVETPFPTARDNLIVAFEKNRLSY---------------AQLFAAPKESPRRPTGKRRGKGQDNSSKKDADVVAAPEKDKATSADEKLKAFCVRFVRLNGILFTRTSLETFSDVLASTSSSLRDLISSSLKEEMSFGKD--TSDSALF 378

The following BLAST results are available for this feature:

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p66600.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34120.1	3.370e-150	97.33	unnamed protein product [Brassica oleracea]	[more]
KAF2572498.1	7.980e-60	60.10	hypothetical protein F2Q70_00005819 [Brassica cret...	[more]
ALL27073.1	3.160e-59	100.00	C9.SMG7b [Brassica napus]	[more]
XP_013708631.1	2.570e-58	98.97	protein SMG7-like [Brassica napus] >XP_013708632.1...	[more]
XP_018443950.1	1.730e-47	50.38	PREDICTED: protein SMG7 [Raphanus sativus] >XP_018...	[more]
XP_009120890.1	5.630e-44	47.92	protein SMG7 [Brassica rapa] >XP_013667369.1 prote...	[more]
KAF2572500.1	1.460e-43	47.55	hypothetical protein F2Q70_00005817 [Brassica cret...	[more]
KAF2538621.1	1.560e-43	47.55	hypothetical protein F2Q68_00022357 [Brassica cret...	[more]
RID41711.1	1.930e-43	47.55	hypothetical protein BRARA_J01646 [Brassica rapa]	[more]
VDD18861.1	1.950e-43	47.55	unnamed protein product [Brassica rapa]	[more]

Pages

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018834	DNA/RNA-binding domain, Est1-type	PFAM	PF10373	EST1_DNA_bind	coord: 123..185 e-value: 6.7E-5 score: 22.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..127
None	No IPR available	PANTHER	PTHR15696:SF26	BNAC02G44260D PROTEIN	coord: 33..193
None	No IPR available	PANTHER	PTHR15696	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	coord: 33..193
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 62..223
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..61

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:61004235..61006293 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p66600.1_BnaDARv10-RA	C09p66600.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 61004235..61006293 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p66600.1_BnaDARv10-PA ID=C09p66600.1_BnaDARv10-PA|Name=C09p66600.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=224bp
MKTILKIRAKYGLPLDGKKIAEVQKGFGHAAASSGNPHHQVIFPCLFHVM
FLVGTTMSYSLSNGINLICGDNLIVAFEMRLYSHFLSTNTSLSLLSRIVP
NLFTAPKDSSRRPTGKRRGKGGDKDEDVVAVPEKDKVTSADEMLKAFCVK
FVRLNGILFTRTSLETFSDVLGSTSSSLRDLIWSSLTEDMIFWLELYSHD
RSLFPSLNDPVDAEFSLGSDVLL.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018834	DNA/RNA-bd_Est1-type

Orthology

View orthology data for C09p66600.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p66600.1_BnaDARv10-PA