A01p12480.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p12480.1_BnaDARv10-RA
Unique NameA01p12480.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:6338639..6339707 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1069
Exons1
Cds size723
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p12480.1_BnaDARv10A01p12480.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 6338639..6339707 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340566.2270305-five_prime_UTR-A01_BnaDARv10:6338638..63389541626340566.2270305-five_prime_UTR-A01_BnaDARv10:6338638..6338954Brassica napusfive_prime_UTRA01_BnaDARv10 6338639..6338954 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p12480.1_BnaDARv10_exon1A01p12480.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 6338639..6339707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340566.234455-CDS-A01_BnaDARv10:6338954..63396771626340566.234455-CDS-A01_BnaDARv10:6338954..6339677Brassica napusCDSA01_BnaDARv10 6338955..6339677 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340566.2411377-three_prime_UTR-A01_BnaDARv10:6339677..63397071626340566.2411377-three_prime_UTR-A01_BnaDARv10:6339677..6339707Brassica napusthree_prime_UTRA01_BnaDARv10 6339678..6339707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p12480.1_BnaDARv10-RAA01p12480.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 6338955..6339677 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p12480.1_BnaDARv10-RA ID=A01p12480.1_BnaDARv10-RA|Name=A01p12480.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1069bp|location=Sequence derived from alignment at A01_BnaDARv10:6338639..6339707- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
AGAGGTCTCGACGGAATCAAAATCTCAGTCATGATCCGATTCACAAGAAC
AAAACCCATACTCGACTCACTGAGTCACGACCTCCTCCAGAAATGCCACG
CGAGCGGAACCCCCAAGGGAAAATCCAAGCTCAAGACAATCCAAGCCTTG
AAGCGCCACAAAGCCACCACCAAAAGAGGCGGCGGTGTAGAGGATGCGAG
TAAAGGCAAAGGAGCAATCTCCGACCACTGCATAAACCCACCTCACCCCG
TTCGCTACCTCCGACCCAAGGAGAGAGACCGAGAGGCCCAGCGAGAGAAG
CTCGGCCTGATCAGCAAAGCCAGGCAACGAGAGATCGATATCCAGAAAAA
GCTCGGACCTTTCACGAAGACGAGAGCCACCGACGAGGAGCCGATCAGGA
TCGGGGTCGCGGGGTTGGATTACGTCGCGTTGGGGATTTTTACTGAGGAC
GAGTTGCCGAAGTACAAGGTGACGGTGGAGGACGGGAAGAGGCTGGCGAA
GGAGTACAGCAGAGTGCTTATGAGGGAGCATAGGGAGAAGCGTGTTGCGG
AGATTGGTCTGATGAAGATGAGGAAAGAGGCCTTGGAGGCGTTGCCGGAG
GAGCTGAAGAAGGCGGCTTTGGAGCGTGATGCGACGACGCCGTTTCCGGT
GATTCGGGGAGCGGCTACGGTGTTGCCTCCTGTTGAAGGGTATTTGGAGA
GGATTATGAATGCGGCTAATAAGAAGAGCTCGAGTAAAGAGAAGCTGAGA
TGATCTTATTGGGTTTTGATCAAAAGAACAACGTTGAACTTTTGTTTTTA
CTTTGTTGATCCTCCTGAGATAAGATGGTCATAGTGTGTTTACTACACTC
TATGGTAGTAGAACACACTAGTTGAAGCTTATAAAGTTTAAATCTTTTTC
AACTTTTGTCTGTTTGAGATTGAGTTACTTCATAATAACCTTATGAGTAG
TGAAGTTGTTTGGGTTTGAAAGTCACTGGTAACAATTGGTGTCATTCTCT
TGGTTGAGGCTGTTCCTTGGTATGGTTTGTGATCTGTAATTAGCAATCAA
GAACTCCATAGTAACATGG
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protein sequence of A01p12480.1_BnaDARv10-RA

>A01p12480.1_BnaDARv10-PA ID=A01p12480.1_BnaDARv10-PA|Name=A01p12480.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=241bp
MIRFTRTKPILDSLSHDLLQKCHASGTPKGKSKLKTIQALKRHKATTKRG
GGVEDASKGKGAISDHCINPPHPVRYLRPKERDREAQREKLGLISKARQR
EIDIQKKLGPFTKTRATDEEPIRIGVAGLDYVALGIFTEDELPKYKVTVE
DGKRLAKEYSRVLMREHREKRVAEIGLMKMRKEALEALPEELKKAALERD
ATTPFPVIRGAATVLPPVEGYLERIMNAANKKSSSKEKLR.
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mRNA from alignment at A01_BnaDARv10:6338639..6339707-

Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p12480.1_BnaDARv10-RA ID=A01p12480.1_BnaDARv10-RA|Name=A01p12480.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1069bp|location=Sequence derived from alignment at A01_BnaDARv10:6338639..6339707- (Brassica napus)
AGAGGTCTCGACGGAATCAAAATCTCAGTCATGATCCGATTCACAAGAAC
AAAACCCATACTCGACTCACTGAGTCACGACCTCCTCCAGAAATGCCACG
CGAGCGGAACCCCCAAGGGAAAATCCAAGCTCAAGACAATCCAAGCCTTG
AAGCGCCACAAAGCCACCACCAAAAGAGGCGGCGGTGTAGAGGATGCGAG
TAAAGGCAAAGGAGCAATCTCCGACCACTGCATAAACCCACCTCACCCCG
TTCGCTACCTCCGACCCAAGGAGAGAGACCGAGAGGCCCAGCGAGAGAAG
CTCGGCCTGATCAGCAAAGCCAGGCAACGAGAGATCGATATCCAGAAAAA
GCTCGGACCTTTCACGAAGACGAGAGCCACCGACGAGGAGCCGATCAGGA
TCGGGGTCGCGGGGTTGGATTACGTCGCGTTGGGGATTTTTACTGAGGAC
GAGTTGCCGAAGTACAAGGTGACGGTGGAGGACGGGAAGAGGCTGGCGAA
GGAGTACAGCAGAGTGCTTATGAGGGAGCATAGGGAGAAGCGTGTTGCGG
AGATTGGTCTGATGAAGATGAGGAAAGAGGCCTTGGAGGCGTTGCCGGAG
GAGCTGAAGAAGGCGGCTTTGGAGCGTGATGCGACGACGCCGTTTCCGGT
GATTCGGGGAGCGGCTACGGTGTTGCCTCCTGTTGAAGGGTATTTGGAGA
GGATTATGAATGCGGCTAATAAGAAGAGCTCGAGTAAAGAGAAGCTGAGA
TGATCTTATTGGGTTTTGATCAAAAGAACAACGTTGAACTTTTGTTTTTA
CTTTGTTGATCCTCCTGAGATAAGATGGTCATAGTGTGTTTACTACACTC
TATGGTAGTAGAACACACTAGTTGAAGCTTATAAAGTTTAAATCTTTTTC
AACTTTTGTCTGTTTGAGATTGAGTTACTTCATAATAACCTTATGAGTAG
TGAAGTTGTTTGGGTTTGAAAGTCACTGGTAACAATTGGTGTCATTCTCT
TGGTTGAGGCTGTTCCTTGGTATGGTTTGTGATCTGTAATTAGCAATCAA
GAACTCCATAGTAACATGG
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Coding sequence (CDS) from alignment at A01_BnaDARv10:6338639..6339707-

>A01p12480.1_BnaDARv10-RA ID=A01p12480.1_BnaDARv10-RA|Name=A01p12480.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=723bp|location=Sequence derived from alignment at A01_BnaDARv10:6338639..6339707- (Brassica napus)
ATGATCCGATTCACAAGAACAAAACCCATACTCGACTCACTGAGTCACGA
CCTCCTCCAGAAATGCCACGCGAGCGGAACCCCCAAGGGAAAATCCAAGC
TCAAGACAATCCAAGCCTTGAAGCGCCACAAAGCCACCACCAAAAGAGGC
GGCGGTGTAGAGGATGCGAGTAAAGGCAAAGGAGCAATCTCCGACCACTG
CATAAACCCACCTCACCCCGTTCGCTACCTCCGACCCAAGGAGAGAGACC
GAGAGGCCCAGCGAGAGAAGCTCGGCCTGATCAGCAAAGCCAGGCAACGA
GAGATCGATATCCAGAAAAAGCTCGGACCTTTCACGAAGACGAGAGCCAC
CGACGAGGAGCCGATCAGGATCGGGGTCGCGGGGTTGGATTACGTCGCGT
TGGGGATTTTTACTGAGGACGAGTTGCCGAAGTACAAGGTGACGGTGGAG
GACGGGAAGAGGCTGGCGAAGGAGTACAGCAGAGTGCTTATGAGGGAGCA
TAGGGAGAAGCGTGTTGCGGAGATTGGTCTGATGAAGATGAGGAAAGAGG
CCTTGGAGGCGTTGCCGGAGGAGCTGAAGAAGGCGGCTTTGGAGCGTGAT
GCGACGACGCCGTTTCCGGTGATTCGGGGAGCGGCTACGGTGTTGCCTCC
TGTTGAAGGGTATTTGGAGAGGATTATGAATGCGGCTAATAAGAAGAGCT
CGAGTAAAGAGAAGCTGAGATGA
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