A01p12230.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p12230.1_BnaDARv10-RA
Unique Name	A01p12230.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A01_BnaDARv10	contig	A01_BnaDARv10:6202761..6204341 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Darmor-bzh OGS10 v10	2020-07-22

Properties


Property Name	Value
Stop	1
Start	1
Model size	1581
Exons	1
Cds size	1581

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p12230.1_BnaDARv10	A01p12230.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 6202761..6204341 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340563.4853423-CDS-A01_BnaDARv10:6202760..6204341	1626340563.4853423-CDS-A01_BnaDARv10:6202760..6204341	Brassica napus	CDS	A01_BnaDARv10 6202761..6204341 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p12230.1_BnaDARv10_exon1	A01p12230.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 6202761..6204341 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p12230.1_BnaDARv10-RA	A01p12230.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 6202761..6204341 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:6202761..6204341+
coding sequence from alignment at A01_BnaDARv10:6202761..6204341+

spliced messenger RNA

>A01p12230.1_BnaDARv10-RA ID=A01p12230.1_BnaDARv10-RA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1581bp|location=Sequence derived from alignment at A01_BnaDARv10:6202761..6204341+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGTAGTTTTCGTTATGTTTCTTGCTATGCTTGTTTCAGTTTCATC
ACAAGCAGTAGTACAGAAACCAAATATAGGAAACTTCCTCCAATGCCTTC
GTGATTGGAGCGATCCGAAGAATCCCATCACAAAAGCCATCTTCACTCCC
CAAAACTCAACCTTCACCTCGTCTTACGTGTCATACACGAAAAACAAAAG
ATACTCAAACCCTAACGACACAAACCTAATAGCCATCGTTGAGGCAAAAC
ATGAATCCCATGTTCAGACAACTGTGGTCTGCGCTAAGTCCAACCGAGTC
CAGATCCGTATCCGAAGCGGCGGTCACGACTACGAAGGCCTTTCATACAC
CTCTTCCCTGCCGTTTGCAGTTCTCGATATGAACAATCTAAGGTCTATTA
CCATTGACGTGTCCGGCAAGAAAGCTTGGGTTCAAGCTGGTGCAACCCTA
GGAGAGCTCTACACAAAAATCTCTGAAGCGAGTAAAACGTTAGCGTTTCC
GGCTGGCGTTTGCCCCACTCTAGGAGCCGGAGGACACATCAGCGGCGGAG
GGTACGGAAACCTAATGAGAAAATACGGAATCTCTGTGGATCATGTCGTC
GATGCTCAGTTAGTTGATGTCAACGGCAAGATCTTGAACCGTGCCTCCAT
GGGAGAAGATTTGTTTTGGGCTATTCGCGGCGGTGGTGGCGCCAGCTTCG
GCGTTATCCTCTCGTGGACCATCAACCTAGTTGAAGTCCCAGAGACTATA
ACAGTTTTTAACGTTAACAAAACGTTAGGACAAGGAGCTACCGATGTTCT
GTACAAATGGCAGCTTGTCTCTAGCAAGTTGCCTAGAGAGCTTTTCTTGA
GAGCAATGCCTCAAATCACAAAAGGAGCGAATAAAACCATCGCGGTTAAG
TTCATCGCTCAGTTCTTAGGCTCATCAAAGAAGCTCATGGAGATTATAAA
CAAGAACTTACCTGAACTAGGGCTAAAAGGCGAAGATTGCTACGAAATGA
GCTGGCTTAATACGACGACGTTTTGGGCGGACTACCCGGTCGGGACATCG
ACAAGTGTTCTTCTGAAAAGGCCATCTACTCCGCCAGGAGCGTTCTTCAA
AAGCAAATCAGATTACGTCAAGAAACCGATCCCTAAAGAAGGTATGGAGA
AGATGTGGAAAACAATGTTGAAGTTCAACAACCATGTGTTTATGCAATGG
AACCCTTACGGTGGAGTGATGGACAAGATTGCGGCGAATGCAACCGCGTT
TCCTCACAGGAAAGGAAACTTGTTCAAGATTCAGTATTTTGCGTTATGGA
TAGACGCAAACGCCACAAAAGCTAACCTAGCTTTGATGAAAGAACTTTAT
GATGTGGCTGAGACGTACGTGTCAAGCAACCCGAGAGAGGCGTTTTTGAA
TTATAGAGACATTGATGTTGGAAGCAATCCTAGTGGTATGACAAATGTTG
CTAAAGGTAAGGTCTATGGATCCAAGTATTTCGTAGGGAACTTGAACAGA
TTGATGAATGTTAAAGCTAAGTATGATCCTGTTAATTTCTTTAGGCATGA
GCAGAGTATTCCTCCTCTTCGTGCAATGTAA

protein sequence of A01p12230.1_BnaDARv10-RA

>A01p12230.1_BnaDARv10-PA ID=A01p12230.1_BnaDARv10-PA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=527bp
MKVVFVMFLAMLVSVSSQAVVQKPNIGNFLQCLRDWSDPKNPITKAIFTP
QNSTFTSSYVSYTKNKRYSNPNDTNLIAIVEAKHESHVQTTVVCAKSNRV
QIRIRSGGHDYEGLSYTSSLPFAVLDMNNLRSITIDVSGKKAWVQAGATL
GELYTKISEASKTLAFPAGVCPTLGAGGHISGGGYGNLMRKYGISVDHVV
DAQLVDVNGKILNRASMGEDLFWAIRGGGGASFGVILSWTINLVEVPETI
TVFNVNKTLGQGATDVLYKWQLVSSKLPRELFLRAMPQITKGANKTIAVK
FIAQFLGSSKKLMEIINKNLPELGLKGEDCYEMSWLNTTTFWADYPVGTS
TSVLLKRPSTPPGAFFKSKSDYVKKPIPKEGMEKMWKTMLKFNNHVFMQW
NPYGGVMDKIAANATAFPHRKGNLFKIQYFALWIDANATKANLALMKELY
DVAETYVSSNPREAFLNYRDIDVGSNPSGMTNVAKGKVYGSKYFVGNLNR
LMNVKAKYDPVNFFRHEQSIPPLRAM.

mRNA from alignment at A01_BnaDARv10:6202761..6204341+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p12230.1_BnaDARv10-RA ID=A01p12230.1_BnaDARv10-RA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1581bp|location=Sequence derived from alignment at A01_BnaDARv10:6202761..6204341+ (Brassica napus)
ATGAAAGTAGTTTTCGTTATGTTTCTTGCTATGCTTGTTTCAGTTTCATC
ACAAGCAGTAGTACAGAAACCAAATATAGGAAACTTCCTCCAATGCCTTC
GTGATTGGAGCGATCCGAAGAATCCCATCACAAAAGCCATCTTCACTCCC
CAAAACTCAACCTTCACCTCGTCTTACGTGTCATACACGAAAAACAAAAG
ATACTCAAACCCTAACGACACAAACCTAATAGCCATCGTTGAGGCAAAAC
ATGAATCCCATGTTCAGACAACTGTGGTCTGCGCTAAGTCCAACCGAGTC
CAGATCCGTATCCGAAGCGGCGGTCACGACTACGAAGGCCTTTCATACAC
CTCTTCCCTGCCGTTTGCAGTTCTCGATATGAACAATCTAAGGTCTATTA
CCATTGACGTGTCCGGCAAGAAAGCTTGGGTTCAAGCTGGTGCAACCCTA
GGAGAGCTCTACACAAAAATCTCTGAAGCGAGTAAAACGTTAGCGTTTCC
GGCTGGCGTTTGCCCCACTCTAGGAGCCGGAGGACACATCAGCGGCGGAG
GGTACGGAAACCTAATGAGAAAATACGGAATCTCTGTGGATCATGTCGTC
GATGCTCAGTTAGTTGATGTCAACGGCAAGATCTTGAACCGTGCCTCCAT
GGGAGAAGATTTGTTTTGGGCTATTCGCGGCGGTGGTGGCGCCAGCTTCG
GCGTTATCCTCTCGTGGACCATCAACCTAGTTGAAGTCCCAGAGACTATA
ACAGTTTTTAACGTTAACAAAACGTTAGGACAAGGAGCTACCGATGTTCT
GTACAAATGGCAGCTTGTCTCTAGCAAGTTGCCTAGAGAGCTTTTCTTGA
GAGCAATGCCTCAAATCACAAAAGGAGCGAATAAAACCATCGCGGTTAAG
TTCATCGCTCAGTTCTTAGGCTCATCAAAGAAGCTCATGGAGATTATAAA
CAAGAACTTACCTGAACTAGGGCTAAAAGGCGAAGATTGCTACGAAATGA
GCTGGCTTAATACGACGACGTTTTGGGCGGACTACCCGGTCGGGACATCG
ACAAGTGTTCTTCTGAAAAGGCCATCTACTCCGCCAGGAGCGTTCTTCAA
AAGCAAATCAGATTACGTCAAGAAACCGATCCCTAAAGAAGGTATGGAGA
AGATGTGGAAAACAATGTTGAAGTTCAACAACCATGTGTTTATGCAATGG
AACCCTTACGGTGGAGTGATGGACAAGATTGCGGCGAATGCAACCGCGTT
TCCTCACAGGAAAGGAAACTTGTTCAAGATTCAGTATTTTGCGTTATGGA
TAGACGCAAACGCCACAAAAGCTAACCTAGCTTTGATGAAAGAACTTTAT
GATGTGGCTGAGACGTACGTGTCAAGCAACCCGAGAGAGGCGTTTTTGAA
TTATAGAGACATTGATGTTGGAAGCAATCCTAGTGGTATGACAAATGTTG
CTAAAGGTAAGGTCTATGGATCCAAGTATTTCGTAGGGAACTTGAACAGA
TTGATGAATGTTAAAGCTAAGTATGATCCTGTTAATTTCTTTAGGCATGA
GCAGAGTATTCCTCCTCTTCGTGCAATGTAA

Coding sequence (CDS) from alignment at A01_BnaDARv10:6202761..6204341+

>A01p12230.1_BnaDARv10-RA ID=A01p12230.1_BnaDARv10-RA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1581bp|location=Sequence derived from alignment at A01_BnaDARv10:6202761..6204341+ (Brassica napus)
ATGAAAGTAGTTTTCGTTATGTTTCTTGCTATGCTTGTTTCAGTTTCATC
ACAAGCAGTAGTACAGAAACCAAATATAGGAAACTTCCTCCAATGCCTTC
GTGATTGGAGCGATCCGAAGAATCCCATCACAAAAGCCATCTTCACTCCC
CAAAACTCAACCTTCACCTCGTCTTACGTGTCATACACGAAAAACAAAAG
ATACTCAAACCCTAACGACACAAACCTAATAGCCATCGTTGAGGCAAAAC
ATGAATCCCATGTTCAGACAACTGTGGTCTGCGCTAAGTCCAACCGAGTC
CAGATCCGTATCCGAAGCGGCGGTCACGACTACGAAGGCCTTTCATACAC
CTCTTCCCTGCCGTTTGCAGTTCTCGATATGAACAATCTAAGGTCTATTA
CCATTGACGTGTCCGGCAAGAAAGCTTGGGTTCAAGCTGGTGCAACCCTA
GGAGAGCTCTACACAAAAATCTCTGAAGCGAGTAAAACGTTAGCGTTTCC
GGCTGGCGTTTGCCCCACTCTAGGAGCCGGAGGACACATCAGCGGCGGAG
GGTACGGAAACCTAATGAGAAAATACGGAATCTCTGTGGATCATGTCGTC
GATGCTCAGTTAGTTGATGTCAACGGCAAGATCTTGAACCGTGCCTCCAT
GGGAGAAGATTTGTTTTGGGCTATTCGCGGCGGTGGTGGCGCCAGCTTCG
GCGTTATCCTCTCGTGGACCATCAACCTAGTTGAAGTCCCAGAGACTATA
ACAGTTTTTAACGTTAACAAAACGTTAGGACAAGGAGCTACCGATGTTCT
GTACAAATGGCAGCTTGTCTCTAGCAAGTTGCCTAGAGAGCTTTTCTTGA
GAGCAATGCCTCAAATCACAAAAGGAGCGAATAAAACCATCGCGGTTAAG
TTCATCGCTCAGTTCTTAGGCTCATCAAAGAAGCTCATGGAGATTATAAA
CAAGAACTTACCTGAACTAGGGCTAAAAGGCGAAGATTGCTACGAAATGA
GCTGGCTTAATACGACGACGTTTTGGGCGGACTACCCGGTCGGGACATCG
ACAAGTGTTCTTCTGAAAAGGCCATCTACTCCGCCAGGAGCGTTCTTCAA
AAGCAAATCAGATTACGTCAAGAAACCGATCCCTAAAGAAGGTATGGAGA
AGATGTGGAAAACAATGTTGAAGTTCAACAACCATGTGTTTATGCAATGG
AACCCTTACGGTGGAGTGATGGACAAGATTGCGGCGAATGCAACCGCGTT
TCCTCACAGGAAAGGAAACTTGTTCAAGATTCAGTATTTTGCGTTATGGA
TAGACGCAAACGCCACAAAAGCTAACCTAGCTTTGATGAAAGAACTTTAT
GATGTGGCTGAGACGTACGTGTCAAGCAACCCGAGAGAGGCGTTTTTGAA
TTATAGAGACATTGATGTTGGAAGCAATCCTAGTGGTATGACAAATGTTG
CTAAAGGTAAGGTCTATGGATCCAAGTATTTCGTAGGGAACTTGAACAGA
TTGATGAATGTTAAAGCTAAGTATGATCCTGTTAATTTCTTTAGGCATGA
GCAGAGTATTCCTCCTCTTCGTGCAATGTAA

Orthology

View orthology data for A01p12230.1_BnaDARv10-RA

Metabolic Model

View data from metabolic model for A01p12230.1_BnaDARv10-RA