A01p12230.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p12230.1_BnaDARv10-RA
Unique NameA01p12230.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:6202761..6204341 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1581
Exons1
Cds size1581
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p12230.1_BnaDARv10A01p12230.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 6202761..6204341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340563.4853423-CDS-A01_BnaDARv10:6202760..62043411626340563.4853423-CDS-A01_BnaDARv10:6202760..6204341Brassica napusCDSA01_BnaDARv10 6202761..6204341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p12230.1_BnaDARv10_exon1A01p12230.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 6202761..6204341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p12230.1_BnaDARv10-RAA01p12230.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 6202761..6204341 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p12230.1_BnaDARv10-RA ID=A01p12230.1_BnaDARv10-RA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1581bp|location=Sequence derived from alignment at A01_BnaDARv10:6202761..6204341+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGTAGTTTTCGTTATGTTTCTTGCTATGCTTGTTTCAGTTTCATC
ACAAGCAGTAGTACAGAAACCAAATATAGGAAACTTCCTCCAATGCCTTC
GTGATTGGAGCGATCCGAAGAATCCCATCACAAAAGCCATCTTCACTCCC
CAAAACTCAACCTTCACCTCGTCTTACGTGTCATACACGAAAAACAAAAG
ATACTCAAACCCTAACGACACAAACCTAATAGCCATCGTTGAGGCAAAAC
ATGAATCCCATGTTCAGACAACTGTGGTCTGCGCTAAGTCCAACCGAGTC
CAGATCCGTATCCGAAGCGGCGGTCACGACTACGAAGGCCTTTCATACAC
CTCTTCCCTGCCGTTTGCAGTTCTCGATATGAACAATCTAAGGTCTATTA
CCATTGACGTGTCCGGCAAGAAAGCTTGGGTTCAAGCTGGTGCAACCCTA
GGAGAGCTCTACACAAAAATCTCTGAAGCGAGTAAAACGTTAGCGTTTCC
GGCTGGCGTTTGCCCCACTCTAGGAGCCGGAGGACACATCAGCGGCGGAG
GGTACGGAAACCTAATGAGAAAATACGGAATCTCTGTGGATCATGTCGTC
GATGCTCAGTTAGTTGATGTCAACGGCAAGATCTTGAACCGTGCCTCCAT
GGGAGAAGATTTGTTTTGGGCTATTCGCGGCGGTGGTGGCGCCAGCTTCG
GCGTTATCCTCTCGTGGACCATCAACCTAGTTGAAGTCCCAGAGACTATA
ACAGTTTTTAACGTTAACAAAACGTTAGGACAAGGAGCTACCGATGTTCT
GTACAAATGGCAGCTTGTCTCTAGCAAGTTGCCTAGAGAGCTTTTCTTGA
GAGCAATGCCTCAAATCACAAAAGGAGCGAATAAAACCATCGCGGTTAAG
TTCATCGCTCAGTTCTTAGGCTCATCAAAGAAGCTCATGGAGATTATAAA
CAAGAACTTACCTGAACTAGGGCTAAAAGGCGAAGATTGCTACGAAATGA
GCTGGCTTAATACGACGACGTTTTGGGCGGACTACCCGGTCGGGACATCG
ACAAGTGTTCTTCTGAAAAGGCCATCTACTCCGCCAGGAGCGTTCTTCAA
AAGCAAATCAGATTACGTCAAGAAACCGATCCCTAAAGAAGGTATGGAGA
AGATGTGGAAAACAATGTTGAAGTTCAACAACCATGTGTTTATGCAATGG
AACCCTTACGGTGGAGTGATGGACAAGATTGCGGCGAATGCAACCGCGTT
TCCTCACAGGAAAGGAAACTTGTTCAAGATTCAGTATTTTGCGTTATGGA
TAGACGCAAACGCCACAAAAGCTAACCTAGCTTTGATGAAAGAACTTTAT
GATGTGGCTGAGACGTACGTGTCAAGCAACCCGAGAGAGGCGTTTTTGAA
TTATAGAGACATTGATGTTGGAAGCAATCCTAGTGGTATGACAAATGTTG
CTAAAGGTAAGGTCTATGGATCCAAGTATTTCGTAGGGAACTTGAACAGA
TTGATGAATGTTAAAGCTAAGTATGATCCTGTTAATTTCTTTAGGCATGA
GCAGAGTATTCCTCCTCTTCGTGCAATGTAA
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protein sequence of A01p12230.1_BnaDARv10-RA

>A01p12230.1_BnaDARv10-PA ID=A01p12230.1_BnaDARv10-PA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=527bp
MKVVFVMFLAMLVSVSSQAVVQKPNIGNFLQCLRDWSDPKNPITKAIFTP
QNSTFTSSYVSYTKNKRYSNPNDTNLIAIVEAKHESHVQTTVVCAKSNRV
QIRIRSGGHDYEGLSYTSSLPFAVLDMNNLRSITIDVSGKKAWVQAGATL
GELYTKISEASKTLAFPAGVCPTLGAGGHISGGGYGNLMRKYGISVDHVV
DAQLVDVNGKILNRASMGEDLFWAIRGGGGASFGVILSWTINLVEVPETI
TVFNVNKTLGQGATDVLYKWQLVSSKLPRELFLRAMPQITKGANKTIAVK
FIAQFLGSSKKLMEIINKNLPELGLKGEDCYEMSWLNTTTFWADYPVGTS
TSVLLKRPSTPPGAFFKSKSDYVKKPIPKEGMEKMWKTMLKFNNHVFMQW
NPYGGVMDKIAANATAFPHRKGNLFKIQYFALWIDANATKANLALMKELY
DVAETYVSSNPREAFLNYRDIDVGSNPSGMTNVAKGKVYGSKYFVGNLNR
LMNVKAKYDPVNFFRHEQSIPPLRAM.
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mRNA from alignment at A01_BnaDARv10:6202761..6204341+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p12230.1_BnaDARv10-RA ID=A01p12230.1_BnaDARv10-RA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1581bp|location=Sequence derived from alignment at A01_BnaDARv10:6202761..6204341+ (Brassica napus)
ATGAAAGTAGTTTTCGTTATGTTTCTTGCTATGCTTGTTTCAGTTTCATC ACAAGCAGTAGTACAGAAACCAAATATAGGAAACTTCCTCCAATGCCTTC GTGATTGGAGCGATCCGAAGAATCCCATCACAAAAGCCATCTTCACTCCC CAAAACTCAACCTTCACCTCGTCTTACGTGTCATACACGAAAAACAAAAG ATACTCAAACCCTAACGACACAAACCTAATAGCCATCGTTGAGGCAAAAC ATGAATCCCATGTTCAGACAACTGTGGTCTGCGCTAAGTCCAACCGAGTC CAGATCCGTATCCGAAGCGGCGGTCACGACTACGAAGGCCTTTCATACAC CTCTTCCCTGCCGTTTGCAGTTCTCGATATGAACAATCTAAGGTCTATTA CCATTGACGTGTCCGGCAAGAAAGCTTGGGTTCAAGCTGGTGCAACCCTA GGAGAGCTCTACACAAAAATCTCTGAAGCGAGTAAAACGTTAGCGTTTCC GGCTGGCGTTTGCCCCACTCTAGGAGCCGGAGGACACATCAGCGGCGGAG GGTACGGAAACCTAATGAGAAAATACGGAATCTCTGTGGATCATGTCGTC GATGCTCAGTTAGTTGATGTCAACGGCAAGATCTTGAACCGTGCCTCCAT GGGAGAAGATTTGTTTTGGGCTATTCGCGGCGGTGGTGGCGCCAGCTTCG GCGTTATCCTCTCGTGGACCATCAACCTAGTTGAAGTCCCAGAGACTATA ACAGTTTTTAACGTTAACAAAACGTTAGGACAAGGAGCTACCGATGTTCT GTACAAATGGCAGCTTGTCTCTAGCAAGTTGCCTAGAGAGCTTTTCTTGA GAGCAATGCCTCAAATCACAAAAGGAGCGAATAAAACCATCGCGGTTAAG TTCATCGCTCAGTTCTTAGGCTCATCAAAGAAGCTCATGGAGATTATAAA CAAGAACTTACCTGAACTAGGGCTAAAAGGCGAAGATTGCTACGAAATGA GCTGGCTTAATACGACGACGTTTTGGGCGGACTACCCGGTCGGGACATCG ACAAGTGTTCTTCTGAAAAGGCCATCTACTCCGCCAGGAGCGTTCTTCAA AAGCAAATCAGATTACGTCAAGAAACCGATCCCTAAAGAAGGTATGGAGA AGATGTGGAAAACAATGTTGAAGTTCAACAACCATGTGTTTATGCAATGG AACCCTTACGGTGGAGTGATGGACAAGATTGCGGCGAATGCAACCGCGTT TCCTCACAGGAAAGGAAACTTGTTCAAGATTCAGTATTTTGCGTTATGGA TAGACGCAAACGCCACAAAAGCTAACCTAGCTTTGATGAAAGAACTTTAT GATGTGGCTGAGACGTACGTGTCAAGCAACCCGAGAGAGGCGTTTTTGAA TTATAGAGACATTGATGTTGGAAGCAATCCTAGTGGTATGACAAATGTTG CTAAAGGTAAGGTCTATGGATCCAAGTATTTCGTAGGGAACTTGAACAGA TTGATGAATGTTAAAGCTAAGTATGATCCTGTTAATTTCTTTAGGCATGA GCAGAGTATTCCTCCTCTTCGTGCAATGTAA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:6202761..6204341+

>A01p12230.1_BnaDARv10-RA ID=A01p12230.1_BnaDARv10-RA|Name=A01p12230.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1581bp|location=Sequence derived from alignment at A01_BnaDARv10:6202761..6204341+ (Brassica napus)
ATGAAAGTAGTTTTCGTTATGTTTCTTGCTATGCTTGTTTCAGTTTCATC
ACAAGCAGTAGTACAGAAACCAAATATAGGAAACTTCCTCCAATGCCTTC
GTGATTGGAGCGATCCGAAGAATCCCATCACAAAAGCCATCTTCACTCCC
CAAAACTCAACCTTCACCTCGTCTTACGTGTCATACACGAAAAACAAAAG
ATACTCAAACCCTAACGACACAAACCTAATAGCCATCGTTGAGGCAAAAC
ATGAATCCCATGTTCAGACAACTGTGGTCTGCGCTAAGTCCAACCGAGTC
CAGATCCGTATCCGAAGCGGCGGTCACGACTACGAAGGCCTTTCATACAC
CTCTTCCCTGCCGTTTGCAGTTCTCGATATGAACAATCTAAGGTCTATTA
CCATTGACGTGTCCGGCAAGAAAGCTTGGGTTCAAGCTGGTGCAACCCTA
GGAGAGCTCTACACAAAAATCTCTGAAGCGAGTAAAACGTTAGCGTTTCC
GGCTGGCGTTTGCCCCACTCTAGGAGCCGGAGGACACATCAGCGGCGGAG
GGTACGGAAACCTAATGAGAAAATACGGAATCTCTGTGGATCATGTCGTC
GATGCTCAGTTAGTTGATGTCAACGGCAAGATCTTGAACCGTGCCTCCAT
GGGAGAAGATTTGTTTTGGGCTATTCGCGGCGGTGGTGGCGCCAGCTTCG
GCGTTATCCTCTCGTGGACCATCAACCTAGTTGAAGTCCCAGAGACTATA
ACAGTTTTTAACGTTAACAAAACGTTAGGACAAGGAGCTACCGATGTTCT
GTACAAATGGCAGCTTGTCTCTAGCAAGTTGCCTAGAGAGCTTTTCTTGA
GAGCAATGCCTCAAATCACAAAAGGAGCGAATAAAACCATCGCGGTTAAG
TTCATCGCTCAGTTCTTAGGCTCATCAAAGAAGCTCATGGAGATTATAAA
CAAGAACTTACCTGAACTAGGGCTAAAAGGCGAAGATTGCTACGAAATGA
GCTGGCTTAATACGACGACGTTTTGGGCGGACTACCCGGTCGGGACATCG
ACAAGTGTTCTTCTGAAAAGGCCATCTACTCCGCCAGGAGCGTTCTTCAA
AAGCAAATCAGATTACGTCAAGAAACCGATCCCTAAAGAAGGTATGGAGA
AGATGTGGAAAACAATGTTGAAGTTCAACAACCATGTGTTTATGCAATGG
AACCCTTACGGTGGAGTGATGGACAAGATTGCGGCGAATGCAACCGCGTT
TCCTCACAGGAAAGGAAACTTGTTCAAGATTCAGTATTTTGCGTTATGGA
TAGACGCAAACGCCACAAAAGCTAACCTAGCTTTGATGAAAGAACTTTAT
GATGTGGCTGAGACGTACGTGTCAAGCAACCCGAGAGAGGCGTTTTTGAA
TTATAGAGACATTGATGTTGGAAGCAATCCTAGTGGTATGACAAATGTTG
CTAAAGGTAAGGTCTATGGATCCAAGTATTTCGTAGGGAACTTGAACAGA
TTGATGAATGTTAAAGCTAAGTATGATCCTGTTAATTTCTTTAGGCATGA
GCAGAGTATTCCTCCTCTTCGTGCAATGTAA
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