A01p11850.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p11850.1_BnaDARv10-RA
Unique NameA01p11850.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:6001201..6003495 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1498
Exons4
Cds size1428
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p11850.1_BnaDARv10A01p11850.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 6001201..6003495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p11850.1_BnaDARv10-RAA01p11850.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 6001201..6003308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340559.253113-CDS-A01_BnaDARv10:6001200..60021991626340559.253113-CDS-A01_BnaDARv10:6001200..6002199Brassica napusCDSA01_BnaDARv10 6001201..6002199 -
1626340559.2599533-CDS-A01_BnaDARv10:6002757..60029941626340559.2599533-CDS-A01_BnaDARv10:6002757..6002994Brassica napusCDSA01_BnaDARv10 6002758..6002994 -
1626340559.2674856-CDS-A01_BnaDARv10:6003116..60033081626340559.2674856-CDS-A01_BnaDARv10:6003116..6003308Brassica napusCDSA01_BnaDARv10 6003117..6003308 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p11850.1_BnaDARv10_exon1A01p11850.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 6001201..6002199 -
A01p11850.1_BnaDARv10_exon2A01p11850.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 6002758..6002994 -
A01p11850.1_BnaDARv10_exon3A01p11850.1_BnaDARv10_exon3Brassica napusexonA01_BnaDARv10 6003117..6003495 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340559.273444-three_prime_UTR-A01_BnaDARv10:6003434..60034951626340559.273444-three_prime_UTR-A01_BnaDARv10:6003434..6003495Brassica napusthree_prime_UTRA01_BnaDARv10 6003435..6003495 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p11850.1_BnaDARv10-RA ID=A01p11850.1_BnaDARv10-RA|Name=A01p11850.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1615bp|location=Sequence derived from alignment at A01_BnaDARv10:6001201..6003495- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
AAGGGTGCAAAATGTGTGACTCCCTATAGAAAAGACAAAAGTTTTGTATA
ATGTTTCATTGGTAACCTTAGTTAGGCCCTTCTCTTTTCATGTGCTAACA
AAATACATATATATAAATGTCTCACAACGCCATTACCTTCAGCCAGTCTC
TTATTGTTGGCTCATTGGATTATTATAGGAGGAAACCATGGAGACAAGGA
AAACTCAAGTGGCCGTGCCGGTTTTCTTGGCGATCATGACTCTAATTGTG
AGTCAAGTGGCCTTCGCCGGTAAAGACTCCCTTCATGAACGGCATATGGC
AGAACTGCAAGTAGTTAAGGCATCTTTGGTTCGTCGAAATCTACCGGGTT
TCGTATCTCCTCCTCCCACCCCTCCTCAGGCAGTACCCGGTCCACGCGTG
TATCAAGTGATATCATATGGTGCCGATCCAACAGGGAAAGCGGATAGCAC
AAATGCGATATTGAAAGCTATGGAAGATGCGTTTGATGGACCAGATCATG
GAGTTTTGATGGAAGGTATAAATGATCTTGGAGGAGCAAGAATCGATCTT
CAAGGTGGTAGCTACTTAATCAGCCGTCCTCTCCGGTTTCCCTCAGCCGG
TGCCGGAAACCTCCTCATTAGCGGAGGGACATTAAGGGCATCAGATGATT
TTCCAGTCGATAAATACTTAATTGAACTCAACGATGAATCGTCAAAGTTA
CAGTACATCTTCGAATACATCACTCTCAGAGACCTTCTCATCGACTGCAA
CTATCGCGGAGGAGCAATCGCCGTCATCAACTCTCTCCGAACAAGCATAG
ACAACTGCTACATCACACGGTTCGGAGACACGAACGGGATTCTAGTCCAA
AAAGGACACGAGACTTACATTCGAAACTCGTTTCTCGGTCAACACATAAC
CGCCGGTGGAGACAAAGGAGAGAGGAACTTCTCCGGCACCGCCGTGAACT
TGGTGGGTAATGATAACGCTATCACTGACACCGTTATATTCTCCGCCGCG
ATTGGGGTAATGATATCAGGACAAGCAAACCTTTTGTCTGGTGTGCATTG
TTATAACAAAGCAACCGGGTTTGGTGGAACCGGGATTTATTTGAAATTAC
CCGGTTTAACTCAGAACCGGATTGTGAATTCTTACTTGGATTATACCGGT
ATCGTCGCGGAAGACCCGGTTCAGTTACAAATTTCTGGAACGTTTTTCCT
GGGCGATGCGTTTATTTTGTTGAAATCGATAAACGGTGTGGTTCGTGGGG
TTAACATTGTCGACAATATGTTTTCCGGGTCGGATAATGGGGTCCAGATT
GTGCAGTTGGATCAGACGAATAAGGCGTTTGAGAATGTTGACCAGGTGGT
CGTTGACCGGAACAATGTGAATGGAATGGCAACGAGATCGACGGTGGCTA
AAGCATCGGTCGATGGAAACGGAACGTCTTGGACCGTTGATTTTAACCAG
GTTTTGTTGTTCCCGAATTTAATCAAGCACGTTCAGTACACGCTCGTTGC
ACGTGATGGTGGTGCGTTTCCTATTCACGCGGTAAGGAACGTCTCGGATA
ATCGAGTGGTGGTTCAGACAAATGCACCTGTTACTGCAGAAGTTTATGTA
ACGGTGGACCAGTGA
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protein sequence of A01p11850.1_BnaDARv10-RA

>A01p11850.1_BnaDARv10-PA ID=A01p11850.1_BnaDARv10-PA|Name=A01p11850.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=476bp
METRKTQVAVPVFLAIMTLIVSQVAFAGKDSLHERHMAELQVVKASLVRR
NLPGFVSPPPTPPQAVPGPRVYQVISYGADPTGKADSTNAILKAMEDAFD
GPDHGVLMEGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLR
ASDDFPVDKYLIELNDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSL
RTSIDNCYITRFGDTNGILVQKGHETYIRNSFLGQHITAGGDKGERNFSG
TAVNLVGNDNAITDTVIFSAAIGVMISGQANLLSGVHCYNKATGFGGTGI
YLKLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSING
VVRGVNIVDNMFSGSDNGVQIVQLDQTNKAFENVDQVVVDRNNVNGMATR
STVAKASVDGNGTSWTVDFNQVLLFPNLIKHVQYTLVARDGGAFPIHAVR
NVSDNRVVVQTNAPVTAEVYVTVDQ.
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mRNA from alignment at A01_BnaDARv10:6001201..6003495-

Legend: exonthree_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p11850.1_BnaDARv10-RA ID=A01p11850.1_BnaDARv10-RA|Name=A01p11850.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=2295bp|location=Sequence derived from alignment at A01_BnaDARv10:6001201..6003495- (Brassica napus)
AAGGGTGCAAAATGTGTGACTCCCTATAGAAAAGACAAAAGTTTTGTATA
ATGTTTCATTGGTAACCTTAGTTAGGCCCTTCTCTTTTCATGTGCTAACA
AAATACATATATATAAATGTCTCACAACGCCATTACCTTCAGCCAGTCTC
TTATTGTTGGCTCATTGGATTATTATAGGAGGAAACCATGGAGACAAGGA
AAACTCAAGTGGCCGTGCCGGTTTTCTTGGCGATCATGACTCTAATTGTG
AGTCAAGTGGCCTTCGCCGGTAAAGACTCCCTTCATGAACGGCATATGGC
AGAACTGCAAGTAGTTAAGGCATCTTTGGTTCGTCGAAATCTACCGGGTT
TCGTATCTCCTCCTCCCACCCCTCCTCAGGTATAATATACAACATTCTTT
ACCATAAATCATCATATAGTCTATCTGTTTGTTCAGAAGGTTTTGTCATT
AGTTACAGTAATATGAAATGATAAATGATATTTGATGCATGAATGGTGTA
GGCAGTACCCGGTCCACGCGTGTATCAAGTGATATCATATGGTGCCGATC
CAACAGGGAAAGCGGATAGCACAAATGCGATATTGAAAGCTATGGAAGAT
GCGTTTGATGGACCAGATCATGGAGTTTTGATGGAAGGTATAAATGATCT
TGGAGGAGCAAGAATCGATCTTCAAGGTGGTAGCTACTTAATCAGCCGTC
CTCTCCGGTTTCCCTCAGCCGGTGCCGGAAACCTCCTCGTAAGTATCTCT
TATTGAATGAAAGTTTTTAAAAAGAGTTAGATTTCCTCCGTACGTGTGCA
TATAGATACATGAACTAAGCATGTTTATATCAAAATATGTCTTCATGAAT
CATGGCCCATCTATGTGACGTGACATTCCATCCATACGTTAGATAAATAT
TTTAAAGCATGAAGTTGTCGGTAGAATCTTAGTTTGAACTTAAACTTGAT
TAAAGATGCTCGTACACGTTTGGTGAACCAAACAAAATTTGAGTAAATGA
TCATTACTTTTCTTTCACGAGAATAGAATGATTCTTTTCTTTTTATGCAT
GTTTCTCTCATAATTTCTGACATTGTGACATTTTTATGATTTCCCAACAA
GAAAGTTTTCTTTCTGTTGGGTAAATAAAACTTTTTTGCTGGAGAATTAT
AAAAAAGGTCACAATGTCAGAAATTATGAAAATTAAAAAATCTACTTAAG
TAGTATTGTGTTGTTTTTTTGACAGATTTTTTTTTGTTATATTTTGAAAT
GAATTAATATTGATGTTTTCTTTTATTGACTTGTGTAACACGTCAGATTA
GCGGAGGGACATTAAGGGCATCAGATGATTTTCCAGTCGATAAATACTTA
ATTGAACTCAACGATGAATCGTCAAAGTTACAGTACATCTTCGAATACAT
CACTCTCAGAGACCTTCTCATCGACTGCAACTATCGCGGAGGAGCAATCG
CCGTCATCAACTCTCTCCGAACAAGCATAGACAACTGCTACATCACACGG
TTCGGAGACACGAACGGGATTCTAGTCCAAAAAGGACACGAGACTTACAT
TCGAAACTCGTTTCTCGGTCAACACATAACCGCCGGTGGAGACAAAGGAG
AGAGGAACTTCTCCGGCACCGCCGTGAACTTGGTGGGTAATGATAACGCT
ATCACTGACACCGTTATATTCTCCGCCGCGATTGGGGTAATGATATCAGG
ACAAGCAAACCTTTTGTCTGGTGTGCATTGTTATAACAAAGCAACCGGGT
TTGGTGGAACCGGGATTTATTTGAAATTACCCGGTTTAACTCAGAACCGG
ATTGTGAATTCTTACTTGGATTATACCGGTATCGTCGCGGAAGACCCGGT
TCAGTTACAAATTTCTGGAACGTTTTTCCTGGGCGATGCGTTTATTTTGT
TGAAATCGATAAACGGTGTGGTTCGTGGGGTTAACATTGTCGACAATATG
TTTTCCGGGTCGGATAATGGGGTCCAGATTGTGCAGTTGGATCAGACGAA
TAAGGCGTTTGAGAATGTTGACCAGGTGGTCGTTGACCGGAACAATGTGA
ATGGAATGGCAACGAGATCGACGGTGGCTAAAGCATCGGTCGATGGAAAC
GGAACGTCTTGGACCGTTGATTTTAACCAGGTTTTGTTGTTCCCGAATTT
AATCAAGCACGTTCAGTACACGCTCGTTGCACGTGATGGTGGTGCGTTTC
CTATTCACGCGGTAAGGAACGTCTCGGATAATCGAGTGGTGGTTCAGACA
AATGCACCTGTTACTGCAGAAGTTTATGTAACGGTGGACCAGTGA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:6001201..6003495-

>A01p11850.1_BnaDARv10-RA ID=A01p11850.1_BnaDARv10-RA|Name=A01p11850.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1428bp|location=Sequence derived from alignment at A01_BnaDARv10:6001201..6003495- (Brassica napus)
ATGGAGACAAGGAAAACTCAAGTGGCCGTGCCGGTTTTCTTGGCGATCAT
GACTCTAATTGTGAGTCAAGTGGCCTTCGCCGGTAAAGACTCCCTTCATG
AACGGCATATGGCAGAACTGCAAGTAGTTAAGGCATCTTTGGTTCGTCGA
AATCTACCGGGTTTCGTATCTCCTCCTCCCACCCCTCCTCAGGCAGTACC
CGGTCCACGCGTGTATCAAGTGATATCATATGGTGCCGATCCAACAGGGA
AAGCGGATAGCACAAATGCGATATTGAAAGCTATGGAAGATGCGTTTGAT
GGACCAGATCATGGAGTTTTGATGGAAGGTATAAATGATCTTGGAGGAGC
AAGAATCGATCTTCAAGGTGGTAGCTACTTAATCAGCCGTCCTCTCCGGT
TTCCCTCAGCCGGTGCCGGAAACCTCCTCATTAGCGGAGGGACATTAAGG
GCATCAGATGATTTTCCAGTCGATAAATACTTAATTGAACTCAACGATGA
ATCGTCAAAGTTACAGTACATCTTCGAATACATCACTCTCAGAGACCTTC
TCATCGACTGCAACTATCGCGGAGGAGCAATCGCCGTCATCAACTCTCTC
CGAACAAGCATAGACAACTGCTACATCACACGGTTCGGAGACACGAACGG
GATTCTAGTCCAAAAAGGACACGAGACTTACATTCGAAACTCGTTTCTCG
GTCAACACATAACCGCCGGTGGAGACAAAGGAGAGAGGAACTTCTCCGGC
ACCGCCGTGAACTTGGTGGGTAATGATAACGCTATCACTGACACCGTTAT
ATTCTCCGCCGCGATTGGGGTAATGATATCAGGACAAGCAAACCTTTTGT
CTGGTGTGCATTGTTATAACAAAGCAACCGGGTTTGGTGGAACCGGGATT
TATTTGAAATTACCCGGTTTAACTCAGAACCGGATTGTGAATTCTTACTT
GGATTATACCGGTATCGTCGCGGAAGACCCGGTTCAGTTACAAATTTCTG
GAACGTTTTTCCTGGGCGATGCGTTTATTTTGTTGAAATCGATAAACGGT
GTGGTTCGTGGGGTTAACATTGTCGACAATATGTTTTCCGGGTCGGATAA
TGGGGTCCAGATTGTGCAGTTGGATCAGACGAATAAGGCGTTTGAGAATG
TTGACCAGGTGGTCGTTGACCGGAACAATGTGAATGGAATGGCAACGAGA
TCGACGGTGGCTAAAGCATCGGTCGATGGAAACGGAACGTCTTGGACCGT
TGATTTTAACCAGGTTTTGTTGTTCCCGAATTTAATCAAGCACGTTCAGT
ACACGCTCGTTGCACGTGATGGTGGTGCGTTTCCTATTCACGCGGTAAGG
AACGTCTCGGATAATCGAGTGGTGGTTCAGACAAATGCACCTGTTACTGC
AGAAGTTTATGTAACGGTGGACCAGTGA
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