A01p07530.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p07530.1_BnaDARv10-RA
Unique NameA01p07530.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:3349831..3350129 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size216
Exons2
Cds size216
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p07530.1_BnaDARv10A01p07530.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 3349831..3350129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340514.3685777-CDS-A01_BnaDARv10:3349830..33499291626340514.3685777-CDS-A01_BnaDARv10:3349830..3349929Brassica napusCDSA01_BnaDARv10 3349831..3349929 +
1626340514.380461-CDS-A01_BnaDARv10:3350012..33501291626340514.380461-CDS-A01_BnaDARv10:3350012..3350129Brassica napusCDSA01_BnaDARv10 3350013..3350129 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p07530.1_BnaDARv10_exon1A01p07530.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 3349831..3349929 +
A01p07530.1_BnaDARv10_exon2A01p07530.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 3350013..3350129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p07530.1_BnaDARv10-RAA01p07530.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 3349831..3350129 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p07530.1_BnaDARv10-RA ID=A01p07530.1_BnaDARv10-RA|Name=A01p07530.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=216bp|location=Sequence derived from alignment at A01_BnaDARv10:3349831..3350129+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAAATGGTCTCAGAACTCGCTGTAGTAGTTGCAAAAGAGAGTTC
TATGCAAGGAAAATGCGAAGATCTTCTGGCCTCCACTGGCATCATGCAGA
TAAAAGAGTGTAGCCTAAGGACTCATCTGATACAAACTAGGAGAGAAGAA
GGAGAAGAAGATGCAGAGGAGGAGACTCCTCCACTGTTGCCACCAAGAAA
GTTTCCATGGCCATAA
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protein sequence of A01p07530.1_BnaDARv10-RA

>A01p07530.1_BnaDARv10-PA ID=A01p07530.1_BnaDARv10-PA|Name=A01p07530.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=72bp
MNKMVSELAVVVAKESSMQGKCEDLLASTGIMQIKECSLRTHLIQTRREE
GEEDAEEETPPLLPPRKFPWP.
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mRNA from alignment at A01_BnaDARv10:3349831..3350129+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p07530.1_BnaDARv10-RA ID=A01p07530.1_BnaDARv10-RA|Name=A01p07530.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=299bp|location=Sequence derived from alignment at A01_BnaDARv10:3349831..3350129+ (Brassica napus)
ATGAACAAAATGGTCTCAGAACTCGCTGTAGTAGTTGCAAAAGAGAGTTC
TATGCAAGGAAAATGCGAAGATCTTCTGGCCTCCACTGGCATCATGCAGG
TAACAAAAACAATCCAGTAGTTTAGTGTAGAATGAATTTTGAAAAAATTG
AACTGAAACCGAGTTTTGGTGGCATGGAACAGATAAAAGAGTGTAGCCTA
AGGACTCATCTGATACAAACTAGGAGAGAAGAAGGAGAAGAAGATGCAGA
GGAGGAGACTCCTCCACTGTTGCCACCAAGAAAGTTTCCATGGCCATAA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:3349831..3350129+

>A01p07530.1_BnaDARv10-RA ID=A01p07530.1_BnaDARv10-RA|Name=A01p07530.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=216bp|location=Sequence derived from alignment at A01_BnaDARv10:3349831..3350129+ (Brassica napus)
ATGAACAAAATGGTCTCAGAACTCGCTGTAGTAGTTGCAAAAGAGAGTTC
TATGCAAGGAAAATGCGAAGATCTTCTGGCCTCCACTGGCATCATGCAGA
TAAAAGAGTGTAGCCTAAGGACTCATCTGATACAAACTAGGAGAGAAGAA
GGAGAAGAAGATGCAGAGGAGGAGACTCCTCCACTGTTGCCACCAAGAAA
GTTTCCATGGCCATAA
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