A01p06270.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p06270.1_BnaDARv10-RA
Unique NameA01p06270.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:2831280..2831652 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size373
Exons1
Cds size189
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p06270.1_BnaDARv10A01p06270.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 2831280..2831652 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340500.880923-five_prime_UTR-A01_BnaDARv10:2831279..28314131626340500.880923-five_prime_UTR-A01_BnaDARv10:2831279..2831413Brassica napusfive_prime_UTRA01_BnaDARv10 2831280..2831413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p06270.1_BnaDARv10_exon1A01p06270.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 2831280..2831652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340500.8937712-CDS-A01_BnaDARv10:2831413..28316021626340500.8937712-CDS-A01_BnaDARv10:2831413..2831602Brassica napusCDSA01_BnaDARv10 2831414..2831602 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340500.9051073-three_prime_UTR-A01_BnaDARv10:2831602..28316521626340500.9051073-three_prime_UTR-A01_BnaDARv10:2831602..2831652Brassica napusthree_prime_UTRA01_BnaDARv10 2831603..2831652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p06270.1_BnaDARv10-RAA01p06270.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 2831414..2831602 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p06270.1_BnaDARv10-RA ID=A01p06270.1_BnaDARv10-RA|Name=A01p06270.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=373bp|location=Sequence derived from alignment at A01_BnaDARv10:2831280..2831652+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
GTCGAATGATGTAAAAAGAAATCGGAGATTGTTGAATTTTCTTTCCAAAG
TCAAGATCAAAATGGATCCGATCAAAATGGAGAGTTAGTCAAAGGATCAA
ATGGCATCTTCAATTAGAGAAGACTATTCAAATCATGCAAGGTGGTGACC
ATCTATCTGCGTGTAAGGTTAGCTACCAGAGCTCGGTAATTAGTTTTCTC
CTCAAACTTAGCTTTGTAATAATCATGATTAGCACATACTCGCAAACAGT
TAATAATCAGCTTACGCATAAACCCTTCGAATATACTTCCGAGTTCATGT
CTTCTATTATAAACAAGGTTTGAGTTGAAACGATCTTTATGCAGATTAAA
GAACATCCATCTATGGGACTAAT
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protein sequence of A01p06270.1_BnaDARv10-RA

>A01p06270.1_BnaDARv10-PA ID=A01p06270.1_BnaDARv10-PA|Name=A01p06270.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=63bp
MQGGDHLSACKVSYQSSVISFLLKLSFVIIMISTYSQTVNNQLTHKPFEY
TSEFMSSIINKV.
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mRNA from alignment at A01_BnaDARv10:2831280..2831652+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p06270.1_BnaDARv10-RA ID=A01p06270.1_BnaDARv10-RA|Name=A01p06270.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=373bp|location=Sequence derived from alignment at A01_BnaDARv10:2831280..2831652+ (Brassica napus)
GTCGAATGATGTAAAAAGAAATCGGAGATTGTTGAATTTTCTTTCCAAAG
TCAAGATCAAAATGGATCCGATCAAAATGGAGAGTTAGTCAAAGGATCAA
ATGGCATCTTCAATTAGAGAAGACTATTCAAATCATGCAAGGTGGTGACC
ATCTATCTGCGTGTAAGGTTAGCTACCAGAGCTCGGTAATTAGTTTTCTC
CTCAAACTTAGCTTTGTAATAATCATGATTAGCACATACTCGCAAACAGT
TAATAATCAGCTTACGCATAAACCCTTCGAATATACTTCCGAGTTCATGT
CTTCTATTATAAACAAGGTTTGAGTTGAAACGATCTTTATGCAGATTAAA
GAACATCCATCTATGGGACTAAT
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Coding sequence (CDS) from alignment at A01_BnaDARv10:2831280..2831652+

>A01p06270.1_BnaDARv10-RA ID=A01p06270.1_BnaDARv10-RA|Name=A01p06270.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=189bp|location=Sequence derived from alignment at A01_BnaDARv10:2831280..2831652+ (Brassica napus)
ATGCAAGGTGGTGACCATCTATCTGCGTGTAAGGTTAGCTACCAGAGCTC
GGTAATTAGTTTTCTCCTCAAACTTAGCTTTGTAATAATCATGATTAGCA
CATACTCGCAAACAGTTAATAATCAGCTTACGCATAAACCCTTCGAATAT
ACTTCCGAGTTCATGTCTTCTATTATAAACAAGGTTTGA
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