A01p05570.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p05570.1_BnaDARv10-RA
Unique NameA01p05570.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:2502771..2509741 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size939
Exons3
Cds size939
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p05570.1_BnaDARv10A01p05570.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 2502771..2509741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p05570.1_BnaDARv10-RAA01p05570.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 2502771..2509741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340491.2132382-CDS-A01_BnaDARv10:2502770..25031941626340491.2132382-CDS-A01_BnaDARv10:2502770..2503194Brassica napusCDSA01_BnaDARv10 2502771..2503194 +
1626340491.2215257-CDS-A01_BnaDARv10:2509010..25090911626340491.2215257-CDS-A01_BnaDARv10:2509010..2509091Brassica napusCDSA01_BnaDARv10 2509011..2509091 +
1626340491.2289681-CDS-A01_BnaDARv10:2509307..25097411626340491.2289681-CDS-A01_BnaDARv10:2509307..2509741Brassica napusCDSA01_BnaDARv10 2509308..2509741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p05570.1_BnaDARv10_exon1A01p05570.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 2502771..2503194 +
A01p05570.1_BnaDARv10_exon2A01p05570.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 2509011..2509091 +
A01p05570.1_BnaDARv10_exon3A01p05570.1_BnaDARv10_exon3Brassica napusexonA01_BnaDARv10 2509308..2509741 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p05570.1_BnaDARv10-RA ID=A01p05570.1_BnaDARv10-RA|Name=A01p05570.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=939bp|location=Sequence derived from alignment at A01_BnaDARv10:2502771..2509741+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGACCTATCTGTAATTATTTTGCCACTCCCCACTGCTGTTACCTC
ACCGCTTTGCTCCTTTAAGAAACTCTCCAGCTCCATGATCGCGCCGCGTC
AGGCGTTTACGCGGAAGCAGGAGTACGAGAGCCTCAGGGAGGAAGAAGAT
AGAGCCTGGAGTAAGCTTCGGAGGCCGGTGGTAATGTCGACGGCGGCTTT
AATTTGCGTTGTCATCTTCACTTGCACGATCGTCAGCTTGAGAATTGTGT
TTCCGTCGAATGTTCTGAGCAGGCCGTTCTGCGGAGAGGGAAAGGTGCAG
AGTTTGAATGTATATGGAAATGGTTTTGACTTGACGGATCAGGAGACTGT
GGATTTTTACTGGGTGGTTGTTTTTCTTCCGTCGATGATGCTCTTCTTTG
TGTCATCTGTTTATCTTGTAGCAGGAATGTTTGTGGCTTATTCCGCTCCT
CGCCGTCATGAGTTTCTAAAAGTCGTTGAAAATAACTACTGTGCTTCTAA
AAGAGGTGGGGTTCGTTGCCTGTCAATTCTGAATGTTGTGTTTGCTATCA
TCTACTGTCTACTCGCTATATTTCTCGGCTCAAGCCTCCTGATACAGGAG
AGCAGCTGTTCTGTGCCATTGTTTTGGTGCTACGAGATATCTTCATGGTG
TTTGGTAATCTTGTACGCTGGAACTGCCTTCTTCCTTAGAAGAAGAGCCG
CTTTGAGTATTGACGAAGGAGAGTTTGAGAACAGAAGCCATCAGGGACTG
GAGATGCTTGAAGCTAATCATCCTTTTGAGTTCACACCAGATGTTGAAAG
AAGAGTGAACGAGGGGTTTAAAGCATGGATGGGTCCATCTTTGCTATCAT
CTGATGACGAAGACGAAGACGAACCCGAGTTTTACAATAAGGTGCCCAAT
GTAACAGCTTATACTCTTTCGAGCAGGCAAAGATCTTGA
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protein sequence of A01p05570.1_BnaDARv10-RA

>A01p05570.1_BnaDARv10-PA ID=A01p05570.1_BnaDARv10-PA|Name=A01p05570.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=313bp
MRDLSVIILPLPTAVTSPLCSFKKLSSSMIAPRQAFTRKQEYESLREEED
RAWSKLRRPVVMSTAALICVVIFTCTIVSLRIVFPSNVLSRPFCGEGKVQ
SLNVYGNGFDLTDQETVDFYWVVVFLPSMMLFFVSSVYLVAGMFVAYSAP
RRHEFLKVVENNYCASKRGGVRCLSILNVVFAIIYCLLAIFLGSSLLIQE
SSCSVPLFWCYEISSWCLVILYAGTAFFLRRRAALSIDEGEFENRSHQGL
EMLEANHPFEFTPDVERRVNEGFKAWMGPSLLSSDDEDEDEPEFYNKVPN
VTAYTLSSRQRS.
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mRNA from alignment at A01_BnaDARv10:2502771..2509741+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p05570.1_BnaDARv10-RA ID=A01p05570.1_BnaDARv10-RA|Name=A01p05570.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=6971bp|location=Sequence derived from alignment at A01_BnaDARv10:2502771..2509741+ (Brassica napus)
ATGAGGGACCTATCTGTAATTATTTTGCCACTCCCCACTGCTGTTACCTC ACCGCTTTGCTCCTTTAAGAAACTCTCCAGCTCCATGATCGCGCCGCGTC AGGCGTTTACGCGGAAGCAGGAGTACGAGAGCCTCAGGGAGGAAGAAGAT AGAGCCTGGAGTAAGCTTCGGAGGCCGGTGGTAATGTCGACGGCGGCTTT AATTTGCGTTGTCATCTTCACTTGCACGATCGTCAGCTTGAGAATTGTGT TTCCGTCGAATGTTCTGAGCAGGCCGTTCTGCGGAGAGGGAAAGGTGCAG AGTTTGAATGTATATGGAAATGGTTTTGACTTGACGGATCAGGAGACTGT GGATTTTTACTGGGTGGTTGTTTTTCTTCCGTCGATGATGCTCTTCTTTG TGTCATCTGTTTATCTTGTAGCAGGTGAGTTTCCAAGTCTCTAGCTTTTG TGGCTGATAAATTGTTAGAGAGTGTTGGTTGAGGTGTCCTTATAACCTGA ATGTTTGTTGATAGGTTTAGTTCTATAAAGTATTAGTCTTGACTCTTGAC TGAAGCTATTATATGAAGTTAAGTCTAGTTCTGTGTTGGGTCAGGTTTAT TGGGGTTTAGTGTGTCAACCATAGTGCAAGTTGGTACTCATTACTGTGTT AAGTCAAGTGAACCCGTTTGTTAGATTGGTGGGTCTATAATATTTTTCCT TTTGGAGCTTTCTGTCTCCCTCATATGCTTGACTTTCACATGGCAGCCCT TCTTAGTTCCAGCTCTCTAAGTTTTGAAGGTTCTTAGTGAGCATTGGATT GAACTTCTAGAGTCGAGTTCCATCTATTATCTCTTTTCATTCAGGCCTTC AACAAGTAACTCTTAACAACATATAAACGGTTGAATTATTGTCATCCTTT ATGACTAAGCCTCTTTACAATCTCTCCTTTGTGTTTTTTTTATTAGTCTA ATCATTAAGGTGTGGTATGTTGATAGACCATTAAGAGTATACGTTCGGAA GAGATTGAGAGCAAATGAGGAAGCAGACGTGGCAGAGTGACGTGGAAAGG AAGAGTAGAAGACTGAAGAAGAGTATAAATAGAAGAGAGAAAGGAAAAAT AGAGGCATTCAGTTAGATTGTAACAGAATCATAGGCTTGTGGAGAGAGAT CTCACAAGATAGGCAGATTCGGGAGCTTGTTCTCGTTTCTGAGGATCAGA TTCATTCGGAGCTTTGGTTCTTGGTGAATTTGATACAGATACTTCTTTGT TAATCGAATAATACAAGTATTTGCTTAACAAATTGGTGCGGTGACTCGCT CGAATCTACGCGGGCGGAGAAACGGATCGTGATCGAGCAACGAAGCACGG AGATGACGTCGATCGCATCATTCGATAATGATCTGGAGGAGATGCATAAT AACATCGGGATTTGCGGAAACAAGTCAAGCGATTCATGGAGGTTGGGAAC GTCTTACTTAAGTCGAACGAAGAGTTATCGACACGGATGGCGCACGATAG TATGACGTTATCGAGAATGGATGCATGGCAGCAAGCTGAGAAAGCTGCGG GAAGACAGTTGCAGGAACATCGACTCAACAGGAGCAGGTACATCGCTCGT TCTCAGATACACCTATGGAAGGTCAATCGTCAAGGTTATCGGGGAATCGC GAATAACTGGAATCTAGAAGTGAATTGTTGAAGAAAGTGGATCTTCCTAA TTTTGTGGGAGCCAATCCAAACGTTTGGATCAATAGAGCAGAAAGGTTCT TTCGATTGGGGAATTTCTCCGAACGTGAGAGATTTGATTTGTTATCTGTG CGTTTTGAGGGAACAGTATTGAATTGGTTTAACATTGAGCTGGAGGAAGA ACCGTTTGTAAGTTGGGAAGACTTCAAGGAAAGATTGGTATTGCGTTTTA CGCAACGGATGGAGGATGAACCGGGAAAGTGACTGTTTGCAATCACACAG AAGGGGTCGATAACAGAATACATCAATGAGTTTGAAGAATTACGATCAAT GGTGACGGGAATAGATGAAAAGAACTTGGTTCATGTGTTCTTTAATGGTC TGAAAACTGAGATGAAAGAGGTGATTAAGATGAAAGAACCAAAGGGATTA CGTCAACACATAGCAGCAGTGAGCATGATGGAGGACAAGTGCGCTCAGAA GTCAAGTAGCAAGGGTTGCTCATACAGTCACACCATCACGTTCGACGGGT TTCATTCCTTTACGATCATCATCAAATTTCAACAGTAACAAACAAGAGTC GAGCACTAGCAGTCAACAAGTTAGAAAGCAGGGTGGTCACACAGGAGCTA AACGTTTAACTCCAGCAGAGGTGGCTGAGAAAAGACGCTTGGGGTTGTGT TATCAGTGTGATGAGAAGTGGTCCAAGTCTCACGAATGCAACGCAGTGGG ATTACAAGTGATAACGGTGGTTGATGGTTGTGAAGTTGAGTTACATAATG AAGAGTGGATAGATACATTTGAAGATGAAAATGGTGTGGTGACAGAACTC ATGGGGATATCACTAGCTTCCTTCTTTGGATTATCGTCTCCGACGACGAC GAAGGTGTGGGGTAACATTGGTCAGCTGAAGATAGTGGTAATGCTTGACA GTGGTGCCACACCCAATTTCTTATCTCCCACGGTGGTCACACAACTGCAG ATCACGCCAGTGAGAGACAGGAAGTTGGAGATCATTTTGGGTACGGGTAT ATCGGTAAATGGAACGGGTGTTTGCAAGGATGTACAATTTGGCTTGCCAG TGTTGGAAGACAGAGCTGATTTTATCATGTTGGAGCTAGGACAAGTCGAT ATGATTCTTGGAGTTCAGTGGCTTCGCACGTTGGGAAAGTGTGAAGTGGA TTGGGAAAAACATGAAATGTCTTTTGATTTCAAAGGAAAGCGTGTCACAT TACAGGGTGATTCGTCACTTCAGAATGGGCACATGAATCAGAAAGGATTG CAGTTAAATAAGTCTCACTTAAATGGAATTGACGTTGAGTTCTTCCAGGT CAATACTACCGATAAACAACAAGAGATTCCACTTCCGATAGAGCACTTCA TTGGAAAGGCACTTGAAAATTTTTTGCTGAGCCAACTCAGTTACCGCCTC TGCGTGATAGAGAGCATGCTATCAATCTTATAGCAGGTACTGGGCCCGTA AGTGTTCGTCCTTATCGTTACCCTCACTCATATAAGGAAGAGATGGAAAA GATGGTTTCTCAAATGTTGCAATCGGGCATCATCCGTCCAAGTCGCAGCC CTTATTCCAGTCCCGTGTTGTTGGTAAAGAAAAAGGATGGGACTTGGCGA TTTTGCATTGACTACAGAGCATTAAATAGAGTAACAGTGGCTGACAAATT TTCCATTCCCATGATCGATCAGCTGCTAGATGAGTTGTTCGGGGCTCAGA TCTTCTCTAAGCTGGATTTGCGTTCGGGTTATCATCAGATCCGAATGAAG GAGCAAGATATACACAAGACAGCGTTCCGAACAGCAGATGGTCATTACGA GTTTGTAGTGATGCCGTTTGGGTTAACAAATGCACCAGCTACATTTCAAG CTCTCATAAATGAGATATTCAGACCATACTTACGAAAATTCATCTTGGTG TTTTTTTTATGACATTCTGATATATAGCAAGACAGTGGAAGAGCATGTAC AACATTTGGAGATTGTTCTGAAGCTGTTTGAGAAACACCAACTGTTTGCT AATAAAAAGAAATTCTCCTTTGGCCAATCAAAGGTAGAGTATTTGGGTCA TTTGATAAGCAGAGAAGGCATTTCGACTGATCCAGAAAAGACAGAGGCAA TGCGTAGATGGCCTATTCCAAAGACAGTAAAAGATTTAAGAGGATTCTTG GGTTTAACAGGCTATTACAGGAACTATGTGAAGGGTTATGGTTCTATAGC TCCACCATTAACTAGTTTGTTGAGGAAGGATGCTTTTGAATGGTCAGAGC AAGCTAAGAAGGCATTTGATGCGTTGAAAATTGCGATGTGTACAGCTCCG GTCTTAACGTTACCAGATTTCACAAAGACATTTGTTGTGGAGTCTGATGC ATCTGGTTATGGCGTGGGCGCGGTTTTGATGCAGAACCAGAGACCAGTGG CGTATTTCAGCGCAAGGTTGTCAGATAGGGAGCAGATAAAACCCATTTAT GAGCGGGAATTAATGGCAATAGTACTTGCGATTCAGAAGTGGCGTCAATA TTTGTTGGGGAGGAAGTTTATAGTACACACTGATCAAAAGAGTTTGAAAT TTCTCTTAGAACAACGAGAGGTTTCTTTGGATTATCAACGATGGCTTACT AAGCTTTTGGGTTATGATTTTGACATAATCTTTAAGCCATGATTGGAAAA TAAAGCGGCAGACGGTTTATCTCGGGTAGGAGTGCAGGATTCTGAGCTGA CGAAATTGTCATTAACTGCATTAACGGTTCCGGCGAGTATTCAAATGCAA GACATCTTTGCGGACATTGATCGATCACAGGAGTTACAAACACTGAAGGC AGCGATTGATAATGGGACAGTTAAGAAGGCTGGATATGACATTGTTCAGG GCAGAGTACGATATAAAGGTCGCTTGTTTTTGGCAAAAGATTCACCTCAC ATACCGTTGATTCTTCGAGAGTATCATGACAGTCTCCTAGGTGGTCATTC CGGGGTATTAAAGACTGTCAAACGTGTTCAAACGGTGTTTCATTGGCGCA AGATGACAAAGGATATTCAGGCGTATGTAGCTGCGTGTGATGTCTGTCAA CGACATAAATATTCGACGTTAACTCCAGCTGGGCTCTTGCAACCATTACC TACTCCTCAACAGGTGTGGGATGGTCTTTCTATGGACTTTATTGAAGGGC TTCCGGTTTCTCACGGGGTGAATGTTGTCTTCGTAGTGGTGGACCGCTTA AGCAAGTTTGCACACTTCTTAAGTTTGAAACATCCGTTTACAGCAGTGGA CGTTGCGAATCTGTTCATTAAAGAGATCGTCCGCTTACATGGGTTTCCTG CGTCGATTGTGTCAGACAGAGATCGCATTTTCTTAAGTTCTTTTTGGAAG AGTCTGTTCAGATTGGGAGGAACACAACTGAAGTATAGTACAGCCTTTCA TCCGCAAACTGATGGGCAAATAGAAGTTCTTAACCGTTGTCTCGAAACGT ACTTGCGTTGCTTTGCTTCGTCCCATCCAAAGTCGTGGGCAAAATACTTG CCTTGGGCAGAGTTATGGTATAACACAAACTATCACACCGCTTTGGGAAC AACGCCGTTTCGGGTGGTATATGGACGGGATCCTCCATCTATATTGAAGT TTGAAGAGGGATCCACTGCTAACTTTGATTTGGAATGTATGTTGAAGGAA AGAGATAGTATGTTGAAGCAGATTAAACAACATTTGCTATTGGCTCAGGA TCGAATGAAGACTAATGCTGTTAAACATAGGAGAGAGCTGATTTTTCAGG TGGGTGATATGGTGTTTTTGAAGCTACGTCCGTATCGTCAACGTTCTGTG GTGAAACGTTTGTACCAGAAGTTGGCGGCTCGTTATTTTGGTCCATTTGA AGTTACAGGACGTGTTGGAGCGGTCGCGTATAGGTTGAAGCTACCAGAGG AGTCGAAGATTCATAATGTGTTTCACGTTTCTCAATTGAAACCGGTTATT GGGCAGAATCATCACGTGATGGATTTACCTCGTTCGTTATCGGAGGCTGA GGAGGTGGTGATTGAACCTGCACGGGTGCTAGACACACGCTATGATGCTC AGGGTTGTTTGGAAGGGTTAGTTTCTTGGACAGGCTTGCCAGATTATGAG AATTCATGGGAGAAGGCTACAATGTTACTTAAGCAATTTCCTCATCTGAA GCTTGAGGACAAGCTTCGTTTCGACGCGGCGGGTATTGATAGACCATTAA GAGTATTCGTTCGGAAGAGATTGAGAGCAAATGAGGAAGCAGACGTGGCA GAGTGACGTGGAAAGGAAGAGTAGAAGACTGAAGAAGAGTATAAATAGAA GAGAGAAAGGAAAAATAGAGACATTCAGTTAGATTGTAACAGAATCATAG GCTTGTGGAGAGAGATCTCACAAGATAGGCAGATTCGGGAGCTTGTTCTC GTTTCTGAGGATCAGATTCATTCGGAGCTTTGGTTATTGGTGAATTTGAT ACAGATACTTCTTTGTTAATCGAATAATACAAGTATTTGCTTAACATATG TCTTCTTATTTTTCTCGTTATTTGGTTGCAAACACTGCAGGAATGTTTGT GGCTTATTCCGCTCCTCGCCGTCATGAGTTTCTAAAAGTCGTTGAAAATA ACTACTGTGCTTCTAAAAGAGGTATACACTATCTTCTCTCACTCTTTACG ATGTAGTTCAGCTTTCCATATATATGTTTTTGTAATTTTATTGCATGCGT GCAGCAAATTCATTCCTTCTCAGTACAAAAATTTTTCTTGTAAACTTATA TGTGCTACTAATAATGATGTTTCCACCTTTGAGAATCTGAAGCTTGGAAT TATTGATATTTTTTTGTCGTGTCTAATACACTCACAGGTGGGGTTCGTTG CCTGTCAATTCTGAATGTTGTGTTTGCTATCATCTACTGTCTACTCGCTA TATTTCTCGGCTCAAGCCTCCTGATACAGGAGAGCAGCTGTTCTGTGCCA TTGTTTTGGTGCTACGAGATATCTTCATGGTGTTTGGTAATCTTGTACGC TGGAACTGCCTTCTTCCTTAGAAGAAGAGCCGCTTTGAGTATTGACGAAG GAGAGTTTGAGAACAGAAGCCATCAGGGACTGGAGATGCTTGAAGCTAAT CATCCTTTTGAGTTCACACCAGATGTTGAAAGAAGAGTGAACGAGGGGTT TAAAGCATGGATGGGTCCATCTTTGCTATCATCTGATGACGAAGACGAAG ACGAACCCGAGTTTTACAATAAGGTGCCCAATGTAACAGCTTATACTCTT TCGAGCAGGCAAAGATCTTGA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:2502771..2509741+

>A01p05570.1_BnaDARv10-RA ID=A01p05570.1_BnaDARv10-RA|Name=A01p05570.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=939bp|location=Sequence derived from alignment at A01_BnaDARv10:2502771..2509741+ (Brassica napus)
ATGAGGGACCTATCTGTAATTATTTTGCCACTCCCCACTGCTGTTACCTC
ACCGCTTTGCTCCTTTAAGAAACTCTCCAGCTCCATGATCGCGCCGCGTC
AGGCGTTTACGCGGAAGCAGGAGTACGAGAGCCTCAGGGAGGAAGAAGAT
AGAGCCTGGAGTAAGCTTCGGAGGCCGGTGGTAATGTCGACGGCGGCTTT
AATTTGCGTTGTCATCTTCACTTGCACGATCGTCAGCTTGAGAATTGTGT
TTCCGTCGAATGTTCTGAGCAGGCCGTTCTGCGGAGAGGGAAAGGTGCAG
AGTTTGAATGTATATGGAAATGGTTTTGACTTGACGGATCAGGAGACTGT
GGATTTTTACTGGGTGGTTGTTTTTCTTCCGTCGATGATGCTCTTCTTTG
TGTCATCTGTTTATCTTGTAGCAGGAATGTTTGTGGCTTATTCCGCTCCT
CGCCGTCATGAGTTTCTAAAAGTCGTTGAAAATAACTACTGTGCTTCTAA
AAGAGGTGGGGTTCGTTGCCTGTCAATTCTGAATGTTGTGTTTGCTATCA
TCTACTGTCTACTCGCTATATTTCTCGGCTCAAGCCTCCTGATACAGGAG
AGCAGCTGTTCTGTGCCATTGTTTTGGTGCTACGAGATATCTTCATGGTG
TTTGGTAATCTTGTACGCTGGAACTGCCTTCTTCCTTAGAAGAAGAGCCG
CTTTGAGTATTGACGAAGGAGAGTTTGAGAACAGAAGCCATCAGGGACTG
GAGATGCTTGAAGCTAATCATCCTTTTGAGTTCACACCAGATGTTGAAAG
AAGAGTGAACGAGGGGTTTAAAGCATGGATGGGTCCATCTTTGCTATCAT
CTGATGACGAAGACGAAGACGAACCCGAGTTTTACAATAAGGTGCCCAAT
GTAACAGCTTATACTCTTTCGAGCAGGCAAAGATCTTGA
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