A01p05550.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	A01p05550.1_BnaDARv10-RA
Unique Name	A01p05550.1_BnaDARv10-RA
Type	mRNA
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A01_BnaDARv10	contig	A01_BnaDARv10:2488493..2489602 - View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Darmor-bzh OGS10 v10	2020-07-22

Properties


Property Name	Value
Stop	1
Start	1
Model size	1110
Exons	1
Cds size	1110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p05550.1_BnaDARv10	A01p05550.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 2488493..2489602 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340491.0135589-CDS-A01_BnaDARv10:2488492..2489602	1626340491.0135589-CDS-A01_BnaDARv10:2488492..2489602	Brassica napus	CDS	A01_BnaDARv10 2488493..2489602 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p05550.1_BnaDARv10_exon1	A01p05550.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 2488493..2489602 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p05550.1_BnaDARv10-RA	A01p05550.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 2488493..2489602 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:2488493..2489602-
coding sequence from alignment at A01_BnaDARv10:2488493..2489602-

spliced messenger RNA

>A01p05550.1_BnaDARv10-RA ID=A01p05550.1_BnaDARv10-RA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1110bp|location=Sequence derived from alignment at A01_BnaDARv10:2488493..2489602- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAACAATTACCAAAAGACTTGATAGGAGACATCCTTTGTCTCTT
GCCACTGAAATCTCTTGCCAGATTCAGAGCTGTGTGTAAGGAATGGAACA
CTATTTGGGAAGATAAGAGTTTTTCGAACCACTACTTGTCTCGCATGCGT
CCTCAATTCATGGTAGCGACCAAGTACCAGACTTGTTCGATAGAAATCAA
TCTCGACGAGGAGGACCATGTTTTGTCGTCGATAGTGGAGCGTGATATAA
CTTTAGAATATCCATGTGAAACACATACATCAATAGGTTATTGTGATGGG
TTCGTGTTATTTTGTATGTACAAGAAAGGGTTTGCGATTTGGAACCCTTG
GGTAAGACAGAATAAGTTTATAGAGAATCAAGAATTCGATTTCTGTGGCA
TAGGGTACGATGTTACGGGTTACAAGATATTTGGATTGATGTCTTTTTAC
GATAGTAGTGGAGAAGACAACTACAAAGTTGCCATCTACGAGTGCAAATC
TGAGGTGTGGAAGTTTATTAATGACACTGGTCTTGAACCACGACGTCTGA
TAATGCAAGATAATATCGTGTCTATTAAAGGGAATTTATATGTTATTGCT
ATCGATAGAAAAACTCGTGAATCTTTCCTCCAGTCCTTTGATTTCTCAGA
GGATCAATTCAAGACTATTTGTGCTAATTTACCTAGTATGGAAGGTTGCT
TTACAGGACTCCTTGCGGTTTTCAGGGGAGATCGAGTTTCCTTGTTAATG
CAATCAGAAGAAGTGGACATGAAGGTTGAGATATTGGTGTCAAAACAAAG
GGTTGACGAATACGGAGAGGTCCTAGTGTGGATAAATTTCATGACAGTGT
CAATACCTGACTTCCCGAGTTTACAACCGCATATTCTTTACCCTCGTCCT
ACTTACTTTGTTGACGGCGAAAAGAGGTTATTTGTGTGTGCTTTTGATGA
AACCGAGCATCTATGCATCTACATTGTCAAGGGAGATGTGCTGAGTAAGA
TTCCAATAGATTCTGTGTTGGGTGATATTTTCTTTACTACCTATATGAGT
TATATTCCTAGTTTTAACTCCATTCCTTGTGTGTCAAGGGAGAGTGAAAG
ATTCCAATAG

protein sequence of A01p05550.1_BnaDARv10-RA

>A01p05550.1_BnaDARv10-PA ID=A01p05550.1_BnaDARv10-PA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=370bp
MPQQLPKDLIGDILCLLPLKSLARFRAVCKEWNTIWEDKSFSNHYLSRMR
PQFMVATKYQTCSIEINLDEEDHVLSSIVERDITLEYPCETHTSIGYCDG
FVLFCMYKKGFAIWNPWVRQNKFIENQEFDFCGIGYDVTGYKIFGLMSFY
DSSGEDNYKVAIYECKSEVWKFINDTGLEPRRLIMQDNIVSIKGNLYVIA
IDRKTRESFLQSFDFSEDQFKTICANLPSMEGCFTGLLAVFRGDRVSLLM
QSEEVDMKVEILVSKQRVDEYGEVLVWINFMTVSIPDFPSLQPHILYPRP
TYFVDGEKRLFVCAFDETEHLCIYIVKGDVLSKIPIDSVLGDIFFTTYMS
YIPSFNSIPCVSRESERFQ.

mRNA from alignment at A01_BnaDARv10:2488493..2489602-

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p05550.1_BnaDARv10-RA ID=A01p05550.1_BnaDARv10-RA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1110bp|location=Sequence derived from alignment at A01_BnaDARv10:2488493..2489602- (Brassica napus)
ATGCCGCAACAATTACCAAAAGACTTGATAGGAGACATCCTTTGTCTCTT
GCCACTGAAATCTCTTGCCAGATTCAGAGCTGTGTGTAAGGAATGGAACA
CTATTTGGGAAGATAAGAGTTTTTCGAACCACTACTTGTCTCGCATGCGT
CCTCAATTCATGGTAGCGACCAAGTACCAGACTTGTTCGATAGAAATCAA
TCTCGACGAGGAGGACCATGTTTTGTCGTCGATAGTGGAGCGTGATATAA
CTTTAGAATATCCATGTGAAACACATACATCAATAGGTTATTGTGATGGG
TTCGTGTTATTTTGTATGTACAAGAAAGGGTTTGCGATTTGGAACCCTTG
GGTAAGACAGAATAAGTTTATAGAGAATCAAGAATTCGATTTCTGTGGCA
TAGGGTACGATGTTACGGGTTACAAGATATTTGGATTGATGTCTTTTTAC
GATAGTAGTGGAGAAGACAACTACAAAGTTGCCATCTACGAGTGCAAATC
TGAGGTGTGGAAGTTTATTAATGACACTGGTCTTGAACCACGACGTCTGA
TAATGCAAGATAATATCGTGTCTATTAAAGGGAATTTATATGTTATTGCT
ATCGATAGAAAAACTCGTGAATCTTTCCTCCAGTCCTTTGATTTCTCAGA
GGATCAATTCAAGACTATTTGTGCTAATTTACCTAGTATGGAAGGTTGCT
TTACAGGACTCCTTGCGGTTTTCAGGGGAGATCGAGTTTCCTTGTTAATG
CAATCAGAAGAAGTGGACATGAAGGTTGAGATATTGGTGTCAAAACAAAG
GGTTGACGAATACGGAGAGGTCCTAGTGTGGATAAATTTCATGACAGTGT
CAATACCTGACTTCCCGAGTTTACAACCGCATATTCTTTACCCTCGTCCT
ACTTACTTTGTTGACGGCGAAAAGAGGTTATTTGTGTGTGCTTTTGATGA
AACCGAGCATCTATGCATCTACATTGTCAAGGGAGATGTGCTGAGTAAGA
TTCCAATAGATTCTGTGTTGGGTGATATTTTCTTTACTACCTATATGAGT
TATATTCCTAGTTTTAACTCCATTCCTTGTGTGTCAAGGGAGAGTGAAAG
ATTCCAATAG

Coding sequence (CDS) from alignment at A01_BnaDARv10:2488493..2489602-

>A01p05550.1_BnaDARv10-RA ID=A01p05550.1_BnaDARv10-RA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1110bp|location=Sequence derived from alignment at A01_BnaDARv10:2488493..2489602- (Brassica napus)
ATGCCGCAACAATTACCAAAAGACTTGATAGGAGACATCCTTTGTCTCTT
GCCACTGAAATCTCTTGCCAGATTCAGAGCTGTGTGTAAGGAATGGAACA
CTATTTGGGAAGATAAGAGTTTTTCGAACCACTACTTGTCTCGCATGCGT
CCTCAATTCATGGTAGCGACCAAGTACCAGACTTGTTCGATAGAAATCAA
TCTCGACGAGGAGGACCATGTTTTGTCGTCGATAGTGGAGCGTGATATAA
CTTTAGAATATCCATGTGAAACACATACATCAATAGGTTATTGTGATGGG
TTCGTGTTATTTTGTATGTACAAGAAAGGGTTTGCGATTTGGAACCCTTG
GGTAAGACAGAATAAGTTTATAGAGAATCAAGAATTCGATTTCTGTGGCA
TAGGGTACGATGTTACGGGTTACAAGATATTTGGATTGATGTCTTTTTAC
GATAGTAGTGGAGAAGACAACTACAAAGTTGCCATCTACGAGTGCAAATC
TGAGGTGTGGAAGTTTATTAATGACACTGGTCTTGAACCACGACGTCTGA
TAATGCAAGATAATATCGTGTCTATTAAAGGGAATTTATATGTTATTGCT
ATCGATAGAAAAACTCGTGAATCTTTCCTCCAGTCCTTTGATTTCTCAGA
GGATCAATTCAAGACTATTTGTGCTAATTTACCTAGTATGGAAGGTTGCT
TTACAGGACTCCTTGCGGTTTTCAGGGGAGATCGAGTTTCCTTGTTAATG
CAATCAGAAGAAGTGGACATGAAGGTTGAGATATTGGTGTCAAAACAAAG
GGTTGACGAATACGGAGAGGTCCTAGTGTGGATAAATTTCATGACAGTGT
CAATACCTGACTTCCCGAGTTTACAACCGCATATTCTTTACCCTCGTCCT
ACTTACTTTGTTGACGGCGAAAAGAGGTTATTTGTGTGTGCTTTTGATGA
AACCGAGCATCTATGCATCTACATTGTCAAGGGAGATGTGCTGAGTAAGA
TTCCAATAGATTCTGTGTTGGGTGATATTTTCTTTACTACCTATATGAGT
TATATTCCTAGTTTTAACTCCATTCCTTGTGTGTCAAGGGAGAGTGAAAG
ATTCCAATAG

Orthology

View orthology data for A01p05550.1_BnaDARv10-RA

Metabolic Model

View data from metabolic model for A01p05550.1_BnaDARv10-RA