A01p05550.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p05550.1_BnaDARv10-RA
Unique NameA01p05550.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:2488493..2489602 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1110
Exons1
Cds size1110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p05550.1_BnaDARv10A01p05550.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 2488493..2489602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340491.0135589-CDS-A01_BnaDARv10:2488492..24896021626340491.0135589-CDS-A01_BnaDARv10:2488492..2489602Brassica napusCDSA01_BnaDARv10 2488493..2489602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p05550.1_BnaDARv10_exon1A01p05550.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 2488493..2489602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p05550.1_BnaDARv10-RAA01p05550.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 2488493..2489602 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p05550.1_BnaDARv10-RA ID=A01p05550.1_BnaDARv10-RA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1110bp|location=Sequence derived from alignment at A01_BnaDARv10:2488493..2489602- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAACAATTACCAAAAGACTTGATAGGAGACATCCTTTGTCTCTT
GCCACTGAAATCTCTTGCCAGATTCAGAGCTGTGTGTAAGGAATGGAACA
CTATTTGGGAAGATAAGAGTTTTTCGAACCACTACTTGTCTCGCATGCGT
CCTCAATTCATGGTAGCGACCAAGTACCAGACTTGTTCGATAGAAATCAA
TCTCGACGAGGAGGACCATGTTTTGTCGTCGATAGTGGAGCGTGATATAA
CTTTAGAATATCCATGTGAAACACATACATCAATAGGTTATTGTGATGGG
TTCGTGTTATTTTGTATGTACAAGAAAGGGTTTGCGATTTGGAACCCTTG
GGTAAGACAGAATAAGTTTATAGAGAATCAAGAATTCGATTTCTGTGGCA
TAGGGTACGATGTTACGGGTTACAAGATATTTGGATTGATGTCTTTTTAC
GATAGTAGTGGAGAAGACAACTACAAAGTTGCCATCTACGAGTGCAAATC
TGAGGTGTGGAAGTTTATTAATGACACTGGTCTTGAACCACGACGTCTGA
TAATGCAAGATAATATCGTGTCTATTAAAGGGAATTTATATGTTATTGCT
ATCGATAGAAAAACTCGTGAATCTTTCCTCCAGTCCTTTGATTTCTCAGA
GGATCAATTCAAGACTATTTGTGCTAATTTACCTAGTATGGAAGGTTGCT
TTACAGGACTCCTTGCGGTTTTCAGGGGAGATCGAGTTTCCTTGTTAATG
CAATCAGAAGAAGTGGACATGAAGGTTGAGATATTGGTGTCAAAACAAAG
GGTTGACGAATACGGAGAGGTCCTAGTGTGGATAAATTTCATGACAGTGT
CAATACCTGACTTCCCGAGTTTACAACCGCATATTCTTTACCCTCGTCCT
ACTTACTTTGTTGACGGCGAAAAGAGGTTATTTGTGTGTGCTTTTGATGA
AACCGAGCATCTATGCATCTACATTGTCAAGGGAGATGTGCTGAGTAAGA
TTCCAATAGATTCTGTGTTGGGTGATATTTTCTTTACTACCTATATGAGT
TATATTCCTAGTTTTAACTCCATTCCTTGTGTGTCAAGGGAGAGTGAAAG
ATTCCAATAG
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protein sequence of A01p05550.1_BnaDARv10-RA

>A01p05550.1_BnaDARv10-PA ID=A01p05550.1_BnaDARv10-PA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=370bp
MPQQLPKDLIGDILCLLPLKSLARFRAVCKEWNTIWEDKSFSNHYLSRMR
PQFMVATKYQTCSIEINLDEEDHVLSSIVERDITLEYPCETHTSIGYCDG
FVLFCMYKKGFAIWNPWVRQNKFIENQEFDFCGIGYDVTGYKIFGLMSFY
DSSGEDNYKVAIYECKSEVWKFINDTGLEPRRLIMQDNIVSIKGNLYVIA
IDRKTRESFLQSFDFSEDQFKTICANLPSMEGCFTGLLAVFRGDRVSLLM
QSEEVDMKVEILVSKQRVDEYGEVLVWINFMTVSIPDFPSLQPHILYPRP
TYFVDGEKRLFVCAFDETEHLCIYIVKGDVLSKIPIDSVLGDIFFTTYMS
YIPSFNSIPCVSRESERFQ.
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mRNA from alignment at A01_BnaDARv10:2488493..2489602-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p05550.1_BnaDARv10-RA ID=A01p05550.1_BnaDARv10-RA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1110bp|location=Sequence derived from alignment at A01_BnaDARv10:2488493..2489602- (Brassica napus)
ATGCCGCAACAATTACCAAAAGACTTGATAGGAGACATCCTTTGTCTCTT GCCACTGAAATCTCTTGCCAGATTCAGAGCTGTGTGTAAGGAATGGAACA CTATTTGGGAAGATAAGAGTTTTTCGAACCACTACTTGTCTCGCATGCGT CCTCAATTCATGGTAGCGACCAAGTACCAGACTTGTTCGATAGAAATCAA TCTCGACGAGGAGGACCATGTTTTGTCGTCGATAGTGGAGCGTGATATAA CTTTAGAATATCCATGTGAAACACATACATCAATAGGTTATTGTGATGGG TTCGTGTTATTTTGTATGTACAAGAAAGGGTTTGCGATTTGGAACCCTTG GGTAAGACAGAATAAGTTTATAGAGAATCAAGAATTCGATTTCTGTGGCA TAGGGTACGATGTTACGGGTTACAAGATATTTGGATTGATGTCTTTTTAC GATAGTAGTGGAGAAGACAACTACAAAGTTGCCATCTACGAGTGCAAATC TGAGGTGTGGAAGTTTATTAATGACACTGGTCTTGAACCACGACGTCTGA TAATGCAAGATAATATCGTGTCTATTAAAGGGAATTTATATGTTATTGCT ATCGATAGAAAAACTCGTGAATCTTTCCTCCAGTCCTTTGATTTCTCAGA GGATCAATTCAAGACTATTTGTGCTAATTTACCTAGTATGGAAGGTTGCT TTACAGGACTCCTTGCGGTTTTCAGGGGAGATCGAGTTTCCTTGTTAATG CAATCAGAAGAAGTGGACATGAAGGTTGAGATATTGGTGTCAAAACAAAG GGTTGACGAATACGGAGAGGTCCTAGTGTGGATAAATTTCATGACAGTGT CAATACCTGACTTCCCGAGTTTACAACCGCATATTCTTTACCCTCGTCCT ACTTACTTTGTTGACGGCGAAAAGAGGTTATTTGTGTGTGCTTTTGATGA AACCGAGCATCTATGCATCTACATTGTCAAGGGAGATGTGCTGAGTAAGA TTCCAATAGATTCTGTGTTGGGTGATATTTTCTTTACTACCTATATGAGT TATATTCCTAGTTTTAACTCCATTCCTTGTGTGTCAAGGGAGAGTGAAAG ATTCCAATAG
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Coding sequence (CDS) from alignment at A01_BnaDARv10:2488493..2489602-

>A01p05550.1_BnaDARv10-RA ID=A01p05550.1_BnaDARv10-RA|Name=A01p05550.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=1110bp|location=Sequence derived from alignment at A01_BnaDARv10:2488493..2489602- (Brassica napus)
ATGCCGCAACAATTACCAAAAGACTTGATAGGAGACATCCTTTGTCTCTT
GCCACTGAAATCTCTTGCCAGATTCAGAGCTGTGTGTAAGGAATGGAACA
CTATTTGGGAAGATAAGAGTTTTTCGAACCACTACTTGTCTCGCATGCGT
CCTCAATTCATGGTAGCGACCAAGTACCAGACTTGTTCGATAGAAATCAA
TCTCGACGAGGAGGACCATGTTTTGTCGTCGATAGTGGAGCGTGATATAA
CTTTAGAATATCCATGTGAAACACATACATCAATAGGTTATTGTGATGGG
TTCGTGTTATTTTGTATGTACAAGAAAGGGTTTGCGATTTGGAACCCTTG
GGTAAGACAGAATAAGTTTATAGAGAATCAAGAATTCGATTTCTGTGGCA
TAGGGTACGATGTTACGGGTTACAAGATATTTGGATTGATGTCTTTTTAC
GATAGTAGTGGAGAAGACAACTACAAAGTTGCCATCTACGAGTGCAAATC
TGAGGTGTGGAAGTTTATTAATGACACTGGTCTTGAACCACGACGTCTGA
TAATGCAAGATAATATCGTGTCTATTAAAGGGAATTTATATGTTATTGCT
ATCGATAGAAAAACTCGTGAATCTTTCCTCCAGTCCTTTGATTTCTCAGA
GGATCAATTCAAGACTATTTGTGCTAATTTACCTAGTATGGAAGGTTGCT
TTACAGGACTCCTTGCGGTTTTCAGGGGAGATCGAGTTTCCTTGTTAATG
CAATCAGAAGAAGTGGACATGAAGGTTGAGATATTGGTGTCAAAACAAAG
GGTTGACGAATACGGAGAGGTCCTAGTGTGGATAAATTTCATGACAGTGT
CAATACCTGACTTCCCGAGTTTACAACCGCATATTCTTTACCCTCGTCCT
ACTTACTTTGTTGACGGCGAAAAGAGGTTATTTGTGTGTGCTTTTGATGA
AACCGAGCATCTATGCATCTACATTGTCAAGGGAGATGTGCTGAGTAAGA
TTCCAATAGATTCTGTGTTGGGTGATATTTTCTTTACTACCTATATGAGT
TATATTCCTAGTTTTAACTCCATTCCTTGTGTGTCAAGGGAGAGTGAAAG
ATTCCAATAG
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