A01p04830.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameA01p04830.1_BnaDARv10-RA
Unique NameA01p04830.1_BnaDARv10-RA
TypemRNA
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01_BnaDARv10contigA01_BnaDARv10:2182960..2184114 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Darmor-bzh OGS10 v102020-07-22
Properties
Property NameValue
Stop1
Start1
Model size1060
Exons2
Cds size756
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
A01p04830.1_BnaDARv10A01p04830.1_BnaDARv10Brassica napusgeneA01_BnaDARv10 2182960..2184114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p04830.1_BnaDARv10-RAA01p04830.1_BnaDARv10-PABrassica napuspolypeptideA01_BnaDARv10 2183126..2183976 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340481.6123145-five_prime_UTR-A01_BnaDARv10:2182959..21831251626340481.6123145-five_prime_UTR-A01_BnaDARv10:2182959..2183125Brassica napusfive_prime_UTRA01_BnaDARv10 2182960..2183125 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
A01p04830.1_BnaDARv10_exon1A01p04830.1_BnaDARv10_exon1Brassica napusexonA01_BnaDARv10 2182960..2183285 +
A01p04830.1_BnaDARv10_exon2A01p04830.1_BnaDARv10_exon2Brassica napusexonA01_BnaDARv10 2183381..2184114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340481.6227975-CDS-A01_BnaDARv10:2183125..21832851626340481.6227975-CDS-A01_BnaDARv10:2183125..2183285Brassica napusCDSA01_BnaDARv10 2183126..2183285 +
1626340481.6317213-CDS-A01_BnaDARv10:2183380..21839761626340481.6317213-CDS-A01_BnaDARv10:2183380..2183976Brassica napusCDSA01_BnaDARv10 2183381..2183976 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1626340481.6428235-three_prime_UTR-A01_BnaDARv10:2183976..21841141626340481.6428235-three_prime_UTR-A01_BnaDARv10:2183976..2184114Brassica napusthree_prime_UTRA01_BnaDARv10 2183977..2184114 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>A01p04830.1_BnaDARv10-RA ID=A01p04830.1_BnaDARv10-RA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1060bp|location=Sequence derived from alignment at A01_BnaDARv10:2182960..2184114+ (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
AGAGAAGAGAACCAAGACCAACCCTCTCTTTTATATTCCAATTTATTTTT
CTTTCTTTTGTCTTGTTTTTCACCCTTTTTATCATTTCACCGTAGACTAA
TCCATCATATTCCTCTTTCTTCAACATTTTCTCTGTTTGATGTAGGTGAA
GATAGAGATAGCATCCATGGACATGTCTAGGGGAAGCAACAGTTTTGACA
ATAAGAAAATCAGTTGTCAGAGAGGTCACTGGAGACCTATTGAAGACGAC
CATCTCCGGCAACTCGTGGAACAGTATGGGCCCAAGAACTGGAATTTCAT
TGCTCAACATCTTTGTGGAAGATCAGGGAAAAGTTGTAGATTGAGATGGT
ACAATCAACTTGATCCAAACATCACCAAGAAACCTTTCACTGAGGAAGAA
GAAGAGAGACTTCTCAAAGCTCATCGGATCCAGGGGAACCGTTGGGCCTC
TATAGCAAGGCTATTTCCAGGGAGGACCGATAACGCTGTCAAGAACCATT
TTCATGTCATCATGGCTAGACGCAAACGTGAAAGCTTATCTTCTACGTCT
ACTTCTACGTTCAACCAAAGTTGGCATAATATATTGAGCCCTAGTTCTAG
TCTTACAAGGCTTAATAGATCCTCCCAGTTTGGACTATGGAGGTATCAAA
AGGATACAAGTCGTGGTCACTGGCCTTACACTTTCGTTTCAGCACCAAGA
GATGATCAGTTTGGATCTTCATCGATCTCGAATGTACGCAAAGAAGTTTA
TCCTGAGAGGAGAAAGTTGAAAGAGTTGGTGGATGAACACAATAACGCAT
TTCACACAGCTACACCAGATCAAAACAAGAACTCAGTTGAAGATGGACCA
TCCACGGGAGATGATGGTGGGGAGAAAAATGTTACTTTCATTGATTTTCT
TGGAGTTGGATTAGTTTCTTAAGTTACACTCTCACAACTCAATGATTTTA
AAGGGTATCTATCATTAGGGTTAGGTATCATTTTCAGCCTTTTGCTTCCT
TAAAACCTCATATGGATCTTCTATCAATTACAACTCTCATTTTCCGTCCA
TTTATATCTA
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protein sequence of A01p04830.1_BnaDARv10-RA

>A01p04830.1_BnaDARv10-PA ID=A01p04830.1_BnaDARv10-PA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=252bp
MDMSRGSNSFDNKKISCQRGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLC
GRSGKSCRLRWYNQLDPNITKKPFTEEEEERLLKAHRIQGNRWASIARLF
PGRTDNAVKNHFHVIMARRKRESLSSTSTSTFNQSWHNILSPSSSLTRLN
RSSQFGLWRYQKDTSRGHWPYTFVSAPRDDQFGSSSISNVRKEVYPERRK
LKELVDEHNNAFHTATPDQNKNSVEDGPSTGDDGGEKNVTFIDFLGVGLV
S.
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mRNA from alignment at A01_BnaDARv10:2182960..2184114+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>A01p04830.1_BnaDARv10-RA ID=A01p04830.1_BnaDARv10-RA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1155bp|location=Sequence derived from alignment at A01_BnaDARv10:2182960..2184114+ (Brassica napus)
AGAGAAGAGAACCAAGACCAACCCTCTCTTTTATATTCCAATTTATTTTT
CTTTCTTTTGTCTTGTTTTTCACCCTTTTTATCATTTCACCGTAGACTAA
TCCATCATATTCCTCTTTCTTCAACATTTTCTCTGTTTGATGTAGGTGAA
GATAGAGATAGCATCCATGGACATGTCTAGGGGAAGCAACAGTTTTGACA
ATAAGAAAATCAGTTGTCAGAGAGGTCACTGGAGACCTATTGAAGACGAC
CATCTCCGGCAACTCGTGGAACAGTATGGGCCCAAGAACTGGAATTTCAT
TGCTCAACATCTTTGTGGAAGATCAGGTAATTAATATTTTCATATATAGC
TTGGTCTTTTTCATATGTTCTATATTGGATCTATGTGTTTTTATCAATAA
TTGAGTAATATGGGTTCATAGGGAAAAGTTGTAGATTGAGATGGTACAAT
CAACTTGATCCAAACATCACCAAGAAACCTTTCACTGAGGAAGAAGAAGA
GAGACTTCTCAAAGCTCATCGGATCCAGGGGAACCGTTGGGCCTCTATAG
CAAGGCTATTTCCAGGGAGGACCGATAACGCTGTCAAGAACCATTTTCAT
GTCATCATGGCTAGACGCAAACGTGAAAGCTTATCTTCTACGTCTACTTC
TACGTTCAACCAAAGTTGGCATAATATATTGAGCCCTAGTTCTAGTCTTA
CAAGGCTTAATAGATCCTCCCAGTTTGGACTATGGAGGTATCAAAAGGAT
ACAAGTCGTGGTCACTGGCCTTACACTTTCGTTTCAGCACCAAGAGATGA
TCAGTTTGGATCTTCATCGATCTCGAATGTACGCAAAGAAGTTTATCCTG
AGAGGAGAAAGTTGAAAGAGTTGGTGGATGAACACAATAACGCATTTCAC
ACAGCTACACCAGATCAAAACAAGAACTCAGTTGAAGATGGACCATCCAC
GGGAGATGATGGTGGGGAGAAAAATGTTACTTTCATTGATTTTCTTGGAG
TTGGATTAGTTTCTTAAGTTACACTCTCACAACTCAATGATTTTAAAGGG
TATCTATCATTAGGGTTAGGTATCATTTTCAGCCTTTTGCTTCCTTAAAA
CCTCATATGGATCTTCTATCAATTACAACTCTCATTTTCCGTCCATTTAT
ATCTA
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Coding sequence (CDS) from alignment at A01_BnaDARv10:2182960..2184114+

>A01p04830.1_BnaDARv10-RA ID=A01p04830.1_BnaDARv10-RA|Name=A01p04830.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=756bp|location=Sequence derived from alignment at A01_BnaDARv10:2182960..2184114+ (Brassica napus)
ATGGACATGTCTAGGGGAAGCAACAGTTTTGACAATAAGAAAATCAGTTG
TCAGAGAGGTCACTGGAGACCTATTGAAGACGACCATCTCCGGCAACTCG
TGGAACAGTATGGGCCCAAGAACTGGAATTTCATTGCTCAACATCTTTGT
GGAAGATCAGGGAAAAGTTGTAGATTGAGATGGTACAATCAACTTGATCC
AAACATCACCAAGAAACCTTTCACTGAGGAAGAAGAAGAGAGACTTCTCA
AAGCTCATCGGATCCAGGGGAACCGTTGGGCCTCTATAGCAAGGCTATTT
CCAGGGAGGACCGATAACGCTGTCAAGAACCATTTTCATGTCATCATGGC
TAGACGCAAACGTGAAAGCTTATCTTCTACGTCTACTTCTACGTTCAACC
AAAGTTGGCATAATATATTGAGCCCTAGTTCTAGTCTTACAAGGCTTAAT
AGATCCTCCCAGTTTGGACTATGGAGGTATCAAAAGGATACAAGTCGTGG
TCACTGGCCTTACACTTTCGTTTCAGCACCAAGAGATGATCAGTTTGGAT
CTTCATCGATCTCGAATGTACGCAAAGAAGTTTATCCTGAGAGGAGAAAG
TTGAAAGAGTTGGTGGATGAACACAATAACGCATTTCACACAGCTACACC
AGATCAAAACAAGAACTCAGTTGAAGATGGACCATCCACGGGAGATGATG
GTGGGGAGAAAAATGTTACTTTCATTGATTTTCTTGGAGTTGGATTAGTT
TCTTAA
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